hisat2 hisat2| hisat2 - Align RNAseq reads to a hisat2-indexed genome | |
| Launching the program | |
|
command
|
hisat2 [options]* -x <ht2-idx> {-1 <m1> -2 <m2> | -U <r> | --sra-acc <SRA accession number>} [-S <sam>] |
|
blreads
|
Assemble --> hisat2 |
| Documentation | |
|
Documentation
|
http://www.ccb.jhu.edu/software/hisat/manual.shtml |
|
Manual
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$doc/ccb/hisat2.man |
| Data | |
| Sample input | |
| Sample output | |
| Package: CCB | |
| Platforms: linux-x86_64, osx-x86_64 | |