name        "blrevcomp - reverse and complement"
icon    "$BIRCH/public_html/images/birch_black_ico.png"
tip    "create reverse complement strands"
var "in1"
    type        tempfile
    direction   in
    format      flat
    save        true
var "strand"
    type        chooser
    label       "Strand"
    default     0
    choices
        "reverse complement" "-r"
        "complement only" "-c"
        "flip (reverse only)" "-f"
var "out1"
    type        tempfile
    direction   out
    format      flat
var "gdeoutput"
    type        chooser
    label       "Output to new bldna window?"
    default     1
    choices
        "Yes"       "(echo '' > %out1%; bldna %in1%.blrevcomp; $RM_CMD -f %in1%.blrevcomp %out1%)&"
        "No"        "mv %in1%.blrevcomp %out1%"
panel
    var "Run"
        type        button
        label       "Run"
        shell       "blrevcomp %STRAND% %in1% %in1%.blrevcomp; $RM_CMD %in1%; %GDEOUTPUT%"
        close       true
    var "Help"
        type        button
        label       "Help"
        shell       "$BIRCH/script/chooseviewer.py $BIRCH/doc/bioLegato/blrevcomp.html"
        close       false