# Coding Region Identification in Trinity Assemblies

We developed the [TransDecoder](http://transdecoder.github.io) software to identify likely coding regions within Trinity transcriptome assemblies.  Please visit the TransDecoder GitHub project website for software and documentation: <http://transdecoder.github.io>

Also, be sure to explore the related [Trinotate](http://trinotate.github.io) project for transcript functional annotation, which leverages both Trinity and TransDecoder as inputs. Trinotate is on GitHub at: <http://trinotate.github.io>.