# # a=7 b=1 A=7 B=1 e=1 d=1 x=0 y=0 z=0 D=1e+06 E=1.12086e+17 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=0 normal letters=0 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # # Query sequences=0 normal letters=0 TEST lastal -fMAF -u1 -j5 -p ../data/HOXD70.mat -z3400 -e2500 /tmp/last-test galGal3-M-32.fa # # a=400 b=30 A=400 B=30 e=2500 d=1311 x=3400 y=962 z=3400 D=1e+06 E=2.80488e+07 # R=10 u=1 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=96.1735 g=1 j=5 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=0.00944633 K=0.095059 # # A C G T N M S K W R Y B D H V # A 91 -114 -31 -123 -100 40 -64 -69 34 52 -119 -81 19 8 22 # C -114 100 -125 -31 -100 38 42 -64 -64 -119 52 22 -79 19 9 # G -31 -125 100 -114 -100 -64 42 38 -64 52 -119 9 19 -79 22 # T -123 -31 -114 91 -100 -69 -64 40 34 -119 52 22 8 19 -81 # N -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 -100 # M 40 38 -64 -69 -100 39 0 -67 0 4 -4 -20 -16 13 16 # S -64 42 42 -64 -100 0 42 0 -64 0 0 16 -18 -18 16 # K -69 -64 38 40 -100 -67 0 39 0 -4 4 16 13 -16 -20 # W 34 -64 -64 34 -100 0 -64 0 34 0 0 -16 13 13 -16 # R 52 -119 52 -119 -100 4 0 -4 0 52 -119 -29 19 -24 22 # Y -119 52 -119 52 -100 -4 0 4 0 -119 52 22 -24 19 -29 # B -81 22 9 22 -100 -20 16 16 -16 -29 22 18 -8 -3 -10 # D 19 -79 19 8 -100 -16 -18 13 13 19 -24 -8 15 -7 -3 # H 8 19 -79 19 -100 13 -18 -16 13 -24 19 -3 -7 15 -8 # V 22 9 22 -81 -100 16 16 -20 -16 22 -29 -10 -3 -8 18 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=1595915 EG2=0 E=0 fullScore=1.6e+06 s chrM 0 16775 + 16775 AATTTTATTTTTTAACCTAACTCCCCTACTAAGTGTACCCCCCCTTTCCCCAGGGGGGGTATACTATGCATAATCGTGCATACATTTATATACCACATATATTATGGTACCGGTAATATATACTATATATGTACTAAACCCATTATATGTATACGGGCATTAACCTATATTCCACATTTCTCCCAATGTCCATTCTATGCATGATCTAGGACATACTCATTTACCCTCCCCATAGACAGTTCCAAACCACTATCAAGCCACCTAACTATGAATGGTTACAGGACATAAATCTCACTCTCATGTTCTCCCCCCAACAAGTCACCTAACTATGAATGGTTACAGGACATACATTTAACTACCATGTTCTAACCCATTTGGTTATGCTCGCCGTATCAGATGGATTTATTGATCGTCCACCTCACGAGAGATCAGCAACCCCTGCCTGTAATGTACTTCATGACCAGTCTCAGGCCCATTCTTTCCCCCTACACCCCTCGCCCTACTTGCCTTCCACCGTACCTCTGGTTCCTCGGTCAGGCACATCCCATGCATAACTCCTGAACTTTCTCACTTTTCACGAAGTCATCTGTGGATTATCTTCCCCTCTTTAGTCCGTGATCGCGGCATCTTCTCTCTTCTATTGCTGTTGGTTCCTTCTCTTTTTGGGGCTTCTTCACAGGTTACCCTTCACAGTGCGGGTGCGAGTGCTATTCAAGTGAAGCCTGGACTACACCTGCGTTGCGTCCTATCCTAGTCCTCTCGTGTCCCTCGATGAGACGGTTTGCGTGTATGGGGAATCATCTTGACACTGATGCACTTTGGATCGCATTTGGTTATGGTTCTTCCACCCCCCCGGTAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATTTTCACTTCCTCTATTTTCTTCACAAAACTAGGAAATTCACCACAAttttttctttgttattttttaattttttttttattttttAAAAACATTTTTTAAAAAACTAAATTACATACAAACTACCGCATAAAATCCCTCAAACTATACAAACGTTTATCGTATAATATATATACATTATTGTTTATTCTATCATTATTAGAGAAACTCCACTACCAAAACCATCATTAAAACAAAAATTTACATGCCACTTAACTCCCCTCACAAACAATCGTTATTTATATTGTTAATTAGCAAACACAAAACCCGCCTTCTACCACTATAAAGCCCCCATAGCTTAACCCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAAAGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAACCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAGCTAAGATTAAAATGCAACCAAGCTGTCATAAGCCTAAGATCCACCTAAACCCAACCCAAATCCATCTTAGCCTCAACGATTAATTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCCATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGAGAAATGGGCTACATTTTCTAACATAGAACAAACGAAAAAGGATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTTCACAAGCCATCAACATCAATAAATATATACTTCCCCTCCCGGCTAAAGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACTACCAAGGCGTAGCTATAACTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACAAGGTCGCCTTGACTTGCCCCCCCTCTAGCCCGACAAACTCGTACCCTTAACATAAAAAACTTACCTCCCCCTCTTAACCAAAACATTATAAATTGTCCCAGTATAGGCGATAGAAAAGACTACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTGTCAAACGAATCTAAGTTCCCCCTTAACCCACCCCCTAAAGACACCCACCTTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAAAAGAACACAACCTCCTCCAGCGGATAATAATCACCCCTCCCCGCACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTCCCTCATTAAAAAATCTAAAACCCTATTTGACTCCCTCAACCAAAGCAGGTTAACCTATGACAATAGAAGAATCAATGCTAAAATGAGTAATCTGGAACCTATCCTCCTACGGCGTAAACTTACATTAATACATTATTAACAGAACTCAACTTATACCCCCACACTAACAAGCAATACGTATTCCTCAATCTGTTAAGCCAACCCAGGAGCGCCCACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCTTACAACCTTACACAGCCCCACTGGGTCCACCCACACATAAACCCCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAACCCACAGACCACAACTCTTCACTAAGACCAACTCCTCAAAGTACCAACAGTAACCAGACCCAATATAATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAAGGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTACCCCGGACATGACCCTGCCCACCCTAACAAACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTCCCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTCCCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCCAATCTAAGGAAGCGTGCCTGAACAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGAGTTAAACTCTCTTAGTTTCTGCCCAACTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAATTTTAGTTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTACAGACCCCGGCACACTTTAGTGTACATCAACGAGTTTGCAACTCATTATGAACTTCACTACAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACTCAGCCATCTTACCTGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGCTGGGGCCGGCACAGGATGGACAGTTTACCCCCCTTTAGCCGGCAACCTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTTTCATTACTTAGCAGGTGTTTCCTCCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTGTCACAATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAGCAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACCATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGATATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTAACCTAACCTTTTTCCCCCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACTCATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTACAAGTGCAAGAAAGGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCAATTACATAGACCTGTCAAGACTAAATCACAGGTGCAAACCCTGTACATCTCATATGGCCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATCAAACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTGCCCTCCCCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGAATACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACCTCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGGGTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTACTGTCATCTTAACCATTAAGAAGCTATGCACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACCCTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTCTCCATCATACTCCTAACTTGATTCACCTTCTCTCTGCTTATCCAACCCAAACTTCTTTCATTCACTCTAACAAACAACCCTGCAAACAAAATTACAACAACTAAACCCACCCCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTTATCTCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAATCTCCGCCCTAACGGCACTCATCCTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCACACCAAGCACACTCCTACCACATAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTACTAACCACCTCTGGCCTAATCATATGGTTCCACTACAGCTCGACCACCCTACTGACAATAGGCCTCCTCTCTATACTTCTAGTCATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCCACCACACCCCAACTGTCCAAAAGGGCCTACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTTCCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAAACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTACATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGGTTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGTAGACATCATCTGACTCTTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCTAGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTATCAACCCAGAGAAGAGCAATGAACACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAAACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAATCGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACACCCTATAATAACCCTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGAACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCTAACTAAGACAGCTGGTTTCGACCCAGCAAATTATAGACCCACCTATAACTTTCTTATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCATAATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGAAAACCAAACCCCATCATTCGCCCTTGTACCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATCATCCTACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAACCCTAACCCTCTGAACAGGCATAGACCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAACTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATCACCAAAACCATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAACACCTCATACATCAATACCTGAGCCCTCTCACTTACACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTATCCTAGCCCTAGAACTCTCAAGCCTATCATACTCCCTCACTCCCCCAAAACACAATCCCCTCATAAACTTCTCCTCCTCCCTAGGCTACTTTAACCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGGCCCCGAAGGCCTTGCCAACCTTCATCTCACCATAACCAAAATCTCAACCACACTCCACACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTACAACGATCCTACTTATCCAAAAATAAACTAATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAAATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATTAGCAGTCTGCCTCATGACCCAAATCCTCACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAGCCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACTCTAATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTTAGAGTATCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTACTCTCTGAAACCCTTAAACCGCCCGAATTGCCCCCCGAGACAACCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATCAACAGTAACCACCCCCACCTTTCAAAAATCAACGAGCCCTCCCAGAACCACCCCCATTCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAGCCTCAGGATAAGGATCCGCAGCTAATGACACAGAATAAACAAAAACCACCAACATCCCCCCTAAATACACCAAAAATAACGCCAAGGAAACAAAAGAAACACCCAAACTCACTAACCACCCACATCCTATCACAGACGCTACCACCAACCCCACCACCCCATAATACGGCGAAGGATTAGACGCCACAGCTAAAACCCCCAGCATAAAACAAATCCCAAGAAAAATCACAAAATAAGTCATATTATTCCCGCTTGGTTAGACCCCAAGGACTACGGCTTGAAAAGCCATTGTTGTTCTCAACTACGGGAAC s chrM 0 16775 + 16775 AATTTTATTTTTTAACCTAACTCCCCTACTAAGTGTACCCCCCCTTTCCCCAGGGGGGGTATACTATGCATAATCGTGCATACATTTATATACCACATATATTATGGTACCGGTAATATATACTATATATGTACTAAACCCATTATATGTATACGGGCATTAACCTATATTCCACATTTCTCCCAATGTCCATTCTATGCATGATCTAGGACATACTCATTTACCCTCCCCATAGACAGTTCCAAACCACTATCAAGCCACCTAACTATGAATGGTTACAGGACATAAATCTCACTCTCATGTTCTCCCCCCAACAAGTCACCTAACTATGAATGGTTACAGGACATACATTTAACTACCATGTTCTAACCCATTTGGTTATGCTCGCCGTATCAGATGGATTTATTGATCGTCCACCTCACGAGAGATCAGCAACCCCTGCCTGTAATGTACTTCATGACCAGTCTCAGGCCCATTCTTTCCCCCTACACCCCTCGCCCTACTTGCCTTCCACCGTACCTCTGGTTCCTCGGTCAGGCACATCCCATGCATAACTCCTGAACTTTCTCACTTTTCACGAAGTCATCTGTGGATTATCTTCCCCTCTTTAGTCCGTGATCGCGGCATCTTCTCTCTTCTATTGCTGTTGGTTCCTTCTCTTTTTGGGGCTTCTTCACAGGTTACCCTTCACAGTGCGGGTGCGAGTGCTATTCAAGTGAAGCCTGGACTACACCTGCGTTGCGTCCTATCCTAGTCCTCTCGTGTCCCTCGATGAGACGGTTTGCGTGTATGGGGAATCATCTTGACACTGATGCACTTTGGATCGCATTTGGTTATGGTTCTTCCACCCCCCCGGTAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATTTTCACTTCCTCTATTTTCTTCACAAAACTAGGAAATTCACCACAAttttttctttgttattttttaattttttttttattttttAAAAACATTTTTTAAAAAACTAAATTACATACAAACTACCGCATAAAATCCCTCAAACTATACAAACGTTTATCGTATAATATATATACATTATTGTTTATTCTATCATTATTAGAGAAACTCCACTACCAAAACCATCATTAAAACAAAAATTTACATGCCACTTAACTCCCCTCACAAACAATCGTTATTTATATTGTTAATTAGCAAACACAAAACCCGCCTTCTACCACTATAAAGCCCCCATAGCTTAACCCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAAAGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAACCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAGCTAAGATTAAAATGCAACCAAGCTGTCATAAGCCTAAGATCCACCTAAACCCAACCCAAATCCATCTTAGCCTCAACGATTAATTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCCATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGAGAAATGGGCTACATTTTCTAACATAGAACAAACGAAAAAGGATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTTCACAAGCCATCAACATCAATAAATATATACTTCCCCTCCCGGCTAAAGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACTACCAAGGCGTAGCTATAACTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACAAGGTCGCCTTGACTTGCCCCCCCTCTAGCCCGACAAACTCGTACCCTTAACATAAAAAACTTACCTCCCCCTCTTAACCAAAACATTATAAATTGTCCCAGTATAGGCGATAGAAAAGACTACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTGTCAAACGAATCTAAGTTCCCCCTTAACCCACCCCCTAAAGACACCCACCTTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAAAAGAACACAACCTCCTCCAGCGGATAATAATCACCCCTCCCCGCACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTCCCTCATTAAAAAATCTAAAACCCTATTTGACTCCCTCAACCAAAGCAGGTTAACCTATGACAATAGAAGAATCAATGCTAAAATGAGTAATCTGGAACCTATCCTCCTACGGCGTAAACTTACATTAATACATTATTAACAGAACTCAACTTATACCCCCACACTAACAAGCAATACGTATTCCTCAATCTGTTAAGCCAACCCAGGAGCGCCCACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCTTACAACCTTACACAGCCCCACTGGGTCCACCCACACATAAACCCCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAACCCACAGACCACAACTCTTCACTAAGACCAACTCCTCAAAGTACCAACAGTAACCAGACCCAATATAATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAAGGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTACCCCGGACATGACCCTGCCCACCCTAACAAACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTCCCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTCCCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCCAATCTAAGGAAGCGTGCCTGAACAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGAGTTAAACTCTCTTAGTTTCTGCCCAACTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAATTTTAGTTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTACAGACCCCGGCACACTTTAGTGTACATCAACGAGTTTGCAACTCATTATGAACTTCACTACAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACTCAGCCATCTTACCTGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGCTGGGGCCGGCACAGGATGGACAGTTTACCCCCCTTTAGCCGGCAACCTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTTTCATTACTTAGCAGGTGTTTCCTCCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTGTCACAATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAGCAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACCATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGATATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTAACCTAACCTTTTTCCCCCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACTCATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTACAAGTGCAAGAAAGGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCAATTACATAGACCTGTCAAGACTAAATCACAGGTGCAAACCCTGTACATCTCATATGGCCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATCAAACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTGCCCTCCCCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGAATACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACCTCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGGGTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTACTGTCATCTTAACCATTAAGAAGCTATGCACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACCCTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTCTCCATCATACTCCTAACTTGATTCACCTTCTCTCTGCTTATCCAACCCAAACTTCTTTCATTCACTCTAACAAACAACCCTGCAAACAAAATTACAACAACTAAACCCACCCCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTTATCTCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAATCTCCGCCCTAACGGCACTCATCCTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCACACCAAGCACACTCCTACCACATAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTACTAACCACCTCTGGCCTAATCATATGGTTCCACTACAGCTCGACCACCCTACTGACAATAGGCCTCCTCTCTATACTTCTAGTCATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCCACCACACCCCAACTGTCCAAAAGGGCCTACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTTCCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAAACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTACATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGGTTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGTAGACATCATCTGACTCTTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCTAGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTATCAACCCAGAGAAGAGCAATGAACACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAAACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAATCGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACACCCTATAATAACCCTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGAACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCTAACTAAGACAGCTGGTTTCGACCCAGCAAATTATAGACCCACCTATAACTTTCTTATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCATAATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGAAAACCAAACCCCATCATTCGCCCTTGTACCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATCATCCTACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAACCCTAACCCTCTGAACAGGCATAGACCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAACTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATCACCAAAACCATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAACACCTCATACATCAATACCTGAGCCCTCTCACTTACACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTATCCTAGCCCTAGAACTCTCAAGCCTATCATACTCCCTCACTCCCCCAAAACACAATCCCCTCATAAACTTCTCCTCCTCCCTAGGCTACTTTAACCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGGCCCCGAAGGCCTTGCCAACCTTCATCTCACCATAACCAAAATCTCAACCACACTCCACACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTACAACGATCCTACTTATCCAAAAATAAACTAATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAAATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATTAGCAGTCTGCCTCATGACCCAAATCCTCACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAGCCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACTCTAATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTTAGAGTATCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTACTCTCTGAAACCCTTAAACCGCCCGAATTGCCCCCCGAGACAACCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATCAACAGTAACCACCCCCACCTTTCAAAAATCAACGAGCCCTCCCAGAACCACCCCCATTCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAGCCTCAGGATAAGGATCCGCAGCTAATGACACAGAATAAACAAAAACCACCAACATCCCCCCTAAATACACCAAAAATAACGCCAAGGAAACAAAAGAAACACCCAAACTCACTAACCACCCACATCCTATCACAGACGCTACCACCAACCCCACCACCCCATAATACGGCGAAGGATTAGACGCCACAGCTAAAACCCCCAGCATAAAACAAATCCCAAGAAAAATCACAAAATAAGTCATATTATTCCCGCTTGGTTAGACCCCAAGGACTACGGCTTGAAAAGCCATTGTTGTTCTCAACTACGGGAAC p ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~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a score=2931 EG2=9e+04 E=5.3e-05 fullScore=1.53e+04 s chrM 11454 1544 + 16775 CTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATC--------ATCCTACCAACAATCATACTCTTGCCCACAG------------------------CCCTCTTATCCCCAGCAAAATCC-----ATATGAACTAACA------CCACAATATACA----------------GCCTTCTAATCGCCTCG------ATCAGCCTACACTGACTAACCCCATCATACTACCCCAC--------------------------------AAAAACCCTA---------ACCCTCTGAACAGGCATAGA--------------CCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGC---------------------------------------------------------------TAGCCAAGGCCACCT---------ACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCATTTACCTTCTAT---TCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATC------------------------------------------------------------------------------------------------------------TAGCCTAGCTCTCCTAAT----AGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCAT-GTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCC------------------------------------------------------------------------------------------CTATG---AGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACA----------------------------------GACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAA--------------CCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTA--------------------------------------------------TTCTGCCTAGCAAA----CACAAACTACGAACGGACAC---------------ACAGCCGCATTCTTATCCTGA--------------CACGAGGCCTCCAACC--------------------CCTCCT-----ACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCA------------------------------------------------ACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAA---------------------------------CTGATCCTCCCCCACAA---------TTATCTTAACCGGCAC-------TGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCA---------------ACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGA--------------------------------GAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACAC-----------------------------------------------------------------TCATCCTCAAACCAGAACTAATCTCA---------------GGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATA----------------------------------------------------GGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGC----------------------CCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCT---------------------TTAAACCTCAGTCCCCTT s chrM 13088 1539 + 16775 CTTAACACCCTCACAACATTAA---------------------CACTACTCACCC---------------------------TCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACT--CCCCCATAT---------CCATCAC-----------CAAAACCATTAAAACCGCC--------------TTCCTAATCAGCCTA-----------------------------ATCCCAACAACAATCTTCATCCACTCAGGGGCAGAA------AGCATTGCCACCCACTGAG----------AATGACAATTTATCCCCAACTTCA--------------------------------------------------AGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATC-TTAGAGTTCGCAACATGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAA-----------TAATCTACAACCGAAT------------------------------------------------------------------------------------------------------------------------CGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAA----------TCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGC----AATAGAAGGCCCAACCCCTGTCTCCGCCCTACTC------------------------------------------------------------------------------------------------------CATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAAC-------------------------ACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAAT-----------TGGCCTAGACCTCCCCCAACTAGCCT-----------------------------------------------------TCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAAT---TATCCACAGCC-------------TCAATGGAGAACAAGACATCCGCA------------AAATAGGATGTCTACA--------------AAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCA-------------------------------------------------------ACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGAT---------------------------------CATCGAAAACCTAAACACCTCATACATCAATACCTGAG------------CCCTCTCACTTA-------------CACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATA--------------ACCTTACTAGTCCAAACAGGACAC-------------------------------------------ACACGAACCCCCAGCAATCACCCCATTAACGAAAACA--------------------------------------CCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCC--------------------CTAATCCTCCCCCCTAAAACCCCTCC-----------------------------------------------AATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGG--------------------------------AATTATCCTAGCCCTAGAACTCTCAAGC--------------------------------CTATCATACTCCCTCACTCCCCCAAAACACAATCCCCTC p $%&&'())))))))))(&&%%$"#$$$$########$%&%$"!!!!!!!!!$$$$!!!!!!!!!!!!!!!!!!!!!!!$%(&!!!!!!!!!!!!!!!!!!!!!!!!$&(((((('&''''&&&&&%$!!#$$#"%%%$##"!!!!!!!!!!!!$!!!!!""""""!!!!!!"""""!!!!!$$$!!!"""""#"""""!!""!!%%&&&&&%$""""""!!!!!!!!!!!""#"""!!!!!!""""!!!!!"!"""!!!!!!!!!!""#&'&%"$$$$!!!!!!!""""###"%&'''(('&$!!!!!!!!!!""#""""#$$""""$$$$$$$$$$!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!"##""!!"#"""""###%&&%$$%&%$#""!!!!!""""!"!!!!!!!!!!!"""""!!!!!!$$$%%%%%%&&&%%!"%&''''&%$(**++*)'!"""!!!!!!!!!""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!"""!!!!!""!"""!!!!!!!!!""#""!!!!!!!!!!!!!!!!!"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"!"!!!!!!!""""!!!!!""""!!"""""""""""!!!!"""######"""""""!!!!!!!!"""""""!!!!!!!!!!!!!!"!!"""""""""!!!!!!!!""""""""""""!!!!!!!!!!!!"##$$$$$$####""""""""!!!!!!"!!!!!!!!!!!!!!""#""""""""""###"""""""!!!!!!!!!!!!!""""""!%&&&&%$"###$$%$#""!!!$$$%%%%%%%%$$!!!!""!!!!!!!"!!!!!!"""""""""""""""""###""!!!""""""!!""""""!""""""""$$""""!!"#"!!!!!!!!"#""""""""#"!!!"#&(*)**(&%&&&&&%$""#$$$$#""""!!!!!!!!"#$%$$#$$####"!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!!!!"""""!!!!!!!!!!!!!!!!!$%&'''&%#$##$$$%%#!!!!%''((((,-..,+,,,**))*+,,/102676898<>>=<@@?;52,,*&%%%%$#$%$!$')******++++++********))((((('&$##"""!!!!!!""#""""#"""####$##"""""!!!!"""""""""""####$%$%%%$#"""""""""##$$$##"""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!"##"""""#$$$%%$#""!!!""##$$$$$$"$%%%$'&%(,./////.,*))('""!!!!!!!!!!!!!!!!!!!!!!"!!!""""##$%&&%%$#######"""""!!!!!!&''&&%%%%%%&(~~~~~~~~~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a score=2931 EG2=9e+04 E=5.3e-05 fullScore=1.53e+04 s chrM 13088 1539 + 16775 CTTAACACCCTCACAACATTAACACTACTC---------------------ACCCTCCTTACCCCTATTATCCTTCCCC---------------------------CCCTCCTAAATCTAAAAAACTCCCCC--ATATCCATCA---------CCAAAACCATTAAAACC-----------GCCTTCCTA--------------ATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGC-----------------------------AGAAAGCATTGCC------ACCCACTGAGAATGACAATTTATC----------CCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTG--------------------------------------------------TAACCTGATCCATCTTAGAGTTC-GCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCAATAA-----------TCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCT------------------------------------------------------------------------------------------------------------------------TGGCCTAATCCT----------AGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCA----ATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGC------------------------------------------------------------------------------------------------------CTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAAC-------------------------GACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCC-----------CCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGC-----------------------------------------------------TCCGGCCTAATTATC---CACAGCCTCAATGGAGAACAAG-------------ACATCCGCAAAATAGGATGTCTA------------CAAAAAACCCTCCCAATAACCA--------------CCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAG-------------------------------------------------------ACCTGATCATCGAAAACCTAAACACCTCATACATCAATAC---------------------------------CTGAGCCCTCTCAC------------TTACACTACT-------------TGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAA--------------ACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGA-------------------------------------------AAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATC--------------------------------------TCATCCCTAATCCTCCCCCCT--------------------AAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTA-----------------------------------------------GGAATTATCCTAGCCCTAGAACTC--------------------------------TCAAGCCTATCATACTCCCTCACTCCC--------------------------------CCAAAACACAATCCCCTC s chrM 11454 1544 + 16775 CTGACCACCTACACAACCTAAA--------CCTTCTACAATGCTAAAGATCATCC------------------------TACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAAT-----CCATAT------GAACTAACAC----------------CACAATATACAGCC------TTCTAATCGCCTCGATCAGCCTA--------------------------------CACTGACTAACCCCATCATACTACCCCACAAAA---------ACCCTAACCCTCTGAA--------------CAGGCATAGACCAAATCTCA---------------------------------------------------------------ACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACC---------TACAACATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCAT---TTACCTTCTATTCTATACCCTAAT------------------------------------------------------------------------------------------------------------TAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAG----CTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGC-CCATGTAGAAGCACCAATCGCAGGCTCCATACTACTC------------------------------------------------------------------------------------------GCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATG---AGGTGCCCTAATAAC----------------------------------TAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAG--------------TATAATCCAAACCCAATGATCAT--------------------------------------------------TCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGC----AAACACAAAC---------------TACGAACGGACACACAGCCGCA--------------TTCTTATCCTGACA--------------------CGAGGCCTCCAACCCCTCCT-----ACCATTGATA------------------------------------------------TCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGAT---------------------------------AGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGAT---------CCTCCCCCACAATTA-------TCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATA---------------CTACTCTCAACCCAACGAGGCAC--------------------------------TCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACA-----------------------------------------------------------------TCTTCTCATAACCCTCCACATCATCCCCATACTAACACTCATCC---------------TCAAACCAGAACTAATCTCAGGAACCCCTCT----------------------------------------------------ATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGG----------------------AGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGC---------------------CAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTT p $%&&'())))))))))(&&%%$!!!!!!!!"#$$$$########$%&%$"!$$$$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!$%(&$&(((((('&''''&&&&&%$#$$#"!!%%%$!!!!!!##"!!!!!!$!!!!!!"""""!!!!!!!!!!""""""$$$!!""!!!!!"""""#"""""%%&&&&&%$""""!!!!!"!"""!!!!!!!!!!""#&'&%"""""""!!!!!!!!!!!""#"""!!!!!!$$$$!""""###"!!!!!!%&'''(('&$""#""""#$$""""!!!!!!!!!!$$$$$$$$$$"##""!!"#"""""###%&&%$$%&%$#""!!!!!""""!"!!!!!!!!!!!"""""!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!$$$%%%%%%&&&%%"%&''''&%!$(**++*)'"""""""""""!!!!"""######"""""""!!!!!!!!"""""""!!!!!!!!!!!!!!"!!"""""""""!!!!!!!!""""""""""""!!!!!!!!!!!!"##$$$$$$####""""""""!!!!!!"!!!!!!!!!!!!!!""#""""""""""###"""""""!!!!!!!!!!!!!""""""!!"""!!!!!!!!!""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!"""!!!!!""!"""!!!!!!!!!""#""!!!!!!!!!!!!!!!!!"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"!"!!!!!!!""""!!!!!""""!!%&&&&%$!!!"###$$%$#""$$$%%%%%%%%$$""#$$$$#""""!!!!!!!!"#$%$$#$$####"!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!!!!"""""!!!!!!!!!!!!!!!!!!!!!""!!!!!!!"!!!!!!"""""""""""""""""###""!!!""""""!!""""""!""""""""$$""""!!"#"!!!!!!!!"#""""""""#"!!!"#&(*)**(&%&&&&&%$$%&'''&%!!!!#$##$$$%%#%''((((,-..,+,,,**))*+,,/102676898<>>=<@@?;52,,*&%%%%$!#$%$$')******++++++********))((((('&$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!!!!!!!!"##"""""#$$$%%$#""!!!""##$$$$$$"##"""!!!!!!""#""""#"""####$##"""""!!!!"""""""""""####$%$%%%$#"""""""""##$$$##"""""!!!!!!!!!!!!!!!!!!!!$%%%$'&%(,./////.,*))('!!!""""##$%&&%%$#######"""""!!!!!!""!!!!!!!!!!!!!!!!!!!!!!"&''&&%%%%%%&(~~~~~~~~~541.,+,,,-38<<:510346763-******))))))('$"""""!!!!!"""""""!!!!!!!!$%&&&%%%$$$$!!!!!!!!!!!!""""!!!!!!""""""#$###""""""""!!!!!""""!!""$%&%%$$$$$#""!!!!""""!!!!!!!!""""""!!!!!!!!!!!!!!$$$%'((('%$"!""!!!$%%%$$$"""!!!!!"""""""!"""!!!!!!!!!%''')))(%"##"#$##""!!!!!""""""""""!$$!""!!!!!"""#$%&$##"#!!!!!!!!!!!!!!$$%$$$$$$%%$&')*)(&%$##$"""""""!!!!"""####"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!""""""""""""""""""""""""#####"$$%%%$$"!!!"!!"""!!!!!!!""!""""""!!!!"""""""!!!""!!""""""##%%%$$""""""!!!$%%%$!!!!!!!!!""""!!""""""$$$!!!!!!!""""###$%%$#"$&&&'(((((())*******+,./00/0000/..-)'""""!!!!!!!!!!!!!!!!!""!!!!!!$%%%%%&%$!!!!!!!!!!!!!!!!!!!!!!""#$##"!!!##$$##"#"""###$#""!!!!!!!!!!!!"""!!!!"""!!!$$$$$!!!!!!!!""""!!!!!!!"#"""##$$$#"""!!!!###"""!!!"""#####$##""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!!"!$$$$$$"""""""""""""""!!!!!!"####"!"!!!!!!$%&''''''&$!!!!!!!!!!!!!""""""""""!!""""#####"""!!!!!!""""""!!!"$$$####"!""""""!!!!!!!!!!""#""""""""""!!!!!!!"$$!!!!!!!!!!!!!!!!!!!!!!""""##""""!"""""#########"""!!!!$$$$$$!"!""""!!!!!!!!!!!!!!!##"""""""""!!!!!!!!!""""#$%%%""$%&'((()*+++***)'$ a score=2878 EG2=1.5e+05 E=8.8e-05 fullScore=1.66e+04 s chrM 5133 1318 + 16775 AGATCAAAACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAA-----------------------------------------------ATGATGGTTTAACCCCTTCCCCTACTA----------------------ATGAACCCCCATGCAAAAC--------------------TAATCTGCACAGTAAGCCTCATCATGGGAACCA----------GCATCACAATCTCC-----AGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATC-----------------------------------------ATCCC----CCTCATCTCCAAGTCACACCACCC----------------CCGAGCGATTGAAGCCACTATCAA-------------------ATATTTCCTCACCCAATCAACTGCAT------------CAGCCCTAATCCTCTTCTCGAG----CATAACCAACGCCTGATC-----------------CACCGGACAATGAGA----CATTACACAACTAAACCACCCGACATCATGCCTAATATTAA--------------------------------------------------CAATAGCAATCGCAATCAAATTAGGACTAGTCCC-----------ATTCCACTTCTGATTCCC---------------AGAAGTAC---TCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCT---------------------------------CCTCCTAACATCAC--------------AGTCTCTTAATACCA--------CCTTACTCACCCTCCT-AGCAATCTCCTC---------CACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGA-----AAAATCC-----TAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCC---------------TATAACCCACAACTC---------ACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTA-------------------------------------------------TCCCTAGCCCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCA-----------------------------------------TGAACTAAAACCCCAATACTAAATGCAACTGTAAT-----------------------------------------------ACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTC---------------------------------------ATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAG-------------------------------------CCACAATCATCACAAT------ACTA----TCACTCCTAAGCCTAT-----TCTTCTACCTCCGACTT---GCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAA-----------------------------------------------------AACTCTGAC---GAACTAA--------CAAAACCCTAAACACCCCC--ACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTAC----------------------------------CATACTATAGAAACTTAGGA-TTAACTGTCAC-CAAACCAAAGGCCTTCAAAGCCTT------------------AAATAAGAGTTAAACTCTCTTAGTTTCT-GCCCAACTAAGA--------------CCAACAGGACATTAACCTGTATCTCCTGAATGCAAATC----------------------------------AGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGA-------------------------TGGGCTTCG s chrM 11658 1376 + 16775 AGACCAAA------------------------------------------------------------------------TCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATA---------------------GCTAGCCAAGGCCACCTACAACATGAACC------------CCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATC----------CAACCATTCATCATCCTAGCC---TTCTCAGCAA-------------------------------------------------CTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCC-CAACCCTCATCTT--AATCACA------CGCTGAGGAAACCAACCAGAACGACT--------------TAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCT----CTCTTCCCCTACTAGTCTCCATCCTCTACC----TTCACA----------------CAAATACTGGAACCCTCCACC-----------TACCCATTATCAAACTCACCCA-----------------------CCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCA-----------CCCCTATACGGACTACACCTATGACT---GCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACT------------------------------------AAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAA------TGGAGCCCGTATCCAACTTCTT-------ACACTACCCCTTCCTCACCC----TAGC---------CCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACA---------GACCTAAAATC-CCTCATTGCCTACTCATCCGTAAGCCATATGGGCCT-------------------AGTCATCGCTGCAAGTATAATCCA------AACCCAATGATCATTCTCAGG---------------------------------------TGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGC----------------------------------------AAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTG---------------------------------ACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCC---------------------------------------AACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAA----------------------------------------------CTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTA--ACCGGCAC--TGCAACACTCCTAA------CCGCCTCTTACACCC-------TCTACATACTAC----------------------------------------TCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACT---CGAGAA----CATCTTCTCATAACCCTCCACA-----TCATCCCCATACTAA----------------------------------------------CACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCAAACATAG--TTTAAC------CCAAAC-------------------ATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTT---CGCCG--------AGGGGAGGCCCAAGCCAGCAAG------------------------------AACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAA---------------------------CTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAG p $$$$$$$$!!!!"#"#"!!!!!!!!!"!!!!!!!!!!"""#########""#########$$$$##"""#"""!!""""!!!!!!!!!""""!!!!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!$$$$$$"###""""""###""!!!!!!!!!!!!!""""!!!!!!!!!!#$%%%%$$"""""""!!!!!!!"!!!!!"!!""""""#""$$%&'''(((''(('%%%%%%%$"#$$#"!!!!!!!!!!"""!$$$$$$$$$$$!!!!"##"$$$$$!"##"""!"!!!!""""""""###""""###"""!"""!!!!!!!!!!!!!!"""""""""""""!!!!!!!!""#######""!!!!!!$$$$!"%%"')***)('$#"$$&&&&%!!!!!!"$%&(())'%#""##!%&())**)'&!!!!!!!!!!!!!!""$$##""""""""!!!!!$$%$$$$$$$$%&&)**))('%!!!!##$$$$$$$#""$%%%%%%&''((('&%$$!!!!!!!!$$!!!!!!!!!!!"""!!!!!!!!"""""#"""!!$$$$"#""######"!!!!$$$$$$$$$$$$$$$$$$!!!!!!!!!!!!!!!!!!!!!!!!!!""""########$$%%&&%%$#$$##""""""#$#$$$###$%%$$$$(*++++****++,,---,(&%%!!!!!!!!!!!"""""""""!!$$$%&&&&&&&&&%%!!!"""#$$$$$$$&*)'$&&&&&%$$$%$%%%)/2554300036769<<;62.-+&"$$"!$%%%%%%$!!"$%$####%'*+,,,-/~~~~~~~~~~~&$#$$$#!!$%%&'()*,..///..,+((&&%%%%%%$$!!!!!!!!!!$$#$%&''%%%$$$####""##$#$#"$$!!!!!!!!!!!!!!!!!!!"""""!!!!!!!!!!""#########"""!!!"!!!!"""""""####""""""$%%%%%$$$$!"!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!"##$%&%$#"""""""#$$###"#####"""""""""""""""!!!!!!!!!!!!"""##$$%%$%$$$%%%%%%%%%%%$#""""""""!$$$$""!!!!$$$&&((((('''&&&&&&&&()*++,------,,,,+*'%#####"!!!!!""!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!""""""""""""""""!!""!!!!!!!"""###$$%%%%$########""""#$##$$$$$#####""$$$$!"$%$#&'(((*****(&$!!!!"!!!!!$()*++++*(%$$$$$$!!!!!!!!!!!""!!!!!!!""""""#$$$$#####"""""""!""""#$$##"!!$$$!!!!"""#$$$$$%%$$##$$$$$$$$$$!!!!!!!!!!!!!!!!!!""#$$##$%&&%$$%&((&&%##""""!!!!!$!"!$&&&&&%%!!!"!!!!!!"""""""$&'*,--...---,+)'&%""""""""!!!!!$%'()*))+./.-,++(&%!"!$$$&&&&%%%%%$$$"""""""##"""""""""""""""!!!!!"!"!!!!!!!"!!$$$$!!!!!!!!"###$$%$""''(())((**++,,+++++**)'&"""!!!!!!!!!!!!!!!!"!""!"""!!!!!!!!!!!!!"""!!!!!$$$$!"""#$%%&&$""!!!!!!!!!""""$%%%%%%%$$ a score=2836 EG2=2.2e+05 E=0.00013 fullScore=1.06e+04 s chrM 15225 1060 + 16775 GAAACCTGAAA----CACAGGAGTAATCCTCCTC---------CTCACACTCATAGCC-------ACCGCCTTTGTGGGCTATGTTCTCCCATGGGG---------------CCAAATATCA-------------TTCTGAGGGGCCACCGTTATCACAAACCTATTCT---------------CAGCAATTCCCTACATTGGACACACCCTAGTAGAGTG----------------------------AGCCTGAGGGGGATTTTCAGTCGACAACCCAA------------------------CCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGC----------------------------------------------------------------------------TCAA-ACAACCCCCTAGGCATCT-CATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGC---------------------------------------------------------TTAACTCTCATACTCACCCCATT----CCTAACACTAGCCCTA--TTCTCCCCCAACCTCCTAGGAGAC-----CCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAA----------TGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCC----------------------------------CAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGAC--------------------------------------------------------CACTCTC---CCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCT---------------------------------------------------TACTTCACC-ATCCTACTTATCCTCTTC-----CCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACT-------------------------CTAATAGTTTATGAAAAA----CATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTT------------------AG--AGTATCAGAAAAGGAGG--------GCTCAAACCTCCATCTCCAGCTCC--------CAAAGCTGGTATTTTCAAATA-AACTACTCTCTGAAACCCTTAAACCGCCCGAA-------------------------TTGCCCCCCGAGACAA------CCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCA------------------------CCCAGCCACCAAAA----------------ACAACCCAAC s chrM 9094 947 + 16775 TAAACC-----CAAACCCA---------------TGATTCTCCATCATACTCCTAAC-TTGATTCACCTTCT-------------------------CTCTGCTTATCCAACCCAAA-----CTTCTTTCATTCACTCTAACAAACAACC-------------------CTGCAAACAAAATTACAACAA-------------------------------CTAAACCCACCCCCTGAACCTGACCATGAACCT---------------------------AAGCTTCTTCGACCAATTCTCAAGCCCCTGC-------------------------------------------------------------------------------------CTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGATC--AACAACCGCCTCTCCA---CCATCCAACTCTGA----------------------------------------------TTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCAC-TTATCCTAATAC--------TCCTCTCCATTAACCTCCTAGGCC--TCCTCCCCTACACCTTCACCCCAACTACCCAACTA---------------------------TCAATAAACATG---------------------------------------GCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCT-------------------------------------------------------------------------------------------GCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACT---GATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTC--------------------------------------------------------------------GGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACT-----TATCCAACTTATCT-----CTACAGCCACAATCGCCCTACT-------------------------------ACCAATAATGCCATCAATCTCCGCCCTA---------------ACGGCACTCATCCT--------------------------------ATTCCTACTAACCATCCTA-GAAGTGGCAG---------TAGCAATAATCCAAGCCTACGTCTTCG-----TCCTCCTCCTAAGCCTCTACTTACAAG--AAAATATTTAATGGCA-----------------CACCAAGCACACTCCTACCACATAGTTGA------------CCCAAGCCCATGACCAATCTTCGGCGCAGC------------------------CGCAGCACTACTAACCACCTCTGGCCTA----------ATCATATGGTTCCACTACAGCTCGAC p $$$%$$!"!!!!!!!$$$$""#$##"""!!!!""!!!!!!!!!$&'((((((''&%$!$&'&%$!$$$$$$$!"##$%%#"#"""!!!!!!"#&&$#!!!!!!!!!!!!!!!$%%%%!!!!!""########"""$$%%%%%%%%%%%%$""###"!!!!!!!!!""""!!!!!!!!!!!!!!!$%%%%$""########""""!!!!!!!"#$$$$##!!!!"""!!!!!!!!!!!!!""""!"""!!$$$$$!!"#$$#""!!!"""!!!!!!!!!!!!!!!"!!!!!!!!!!!!""""!!!"$$$$$$$!!!"""!"""""""""""""!!!!!!!!!!""##$$$###$$%&&$##""""""!!!!!!!""""""""""""!!!!!!!!!!!!!""##$$$#"!!!!!!!""!!!!!!!"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"""""###"""""##$$"""$$""!&+,,,+((('%$$$$"##!%,/13333320,'#$%%%$#####"!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!!""""""""######$$$%%$$$##"#####"!!!!!!!""#""""""""""#####$$&'*+03448;=><;62.-+&!"$$"$%%%%%%$"$%$####!!%'*+,,,-/~~~~~~~~~~~&$!!#$$$#$%%&'()*,..///..,+((&&%%%%%%$$$$#$%&''%%%$$$####""##$#$#"!!!!!!!!!!$$""#########"""!!!"!!!!"""""""####""""""!!!!!!!!!!!!!!!!!!!"""""!!!!!!!!!!$%%%%%$$$$"##$%&%$#"""""""#$$###"#####"""""""""""""""!!!!!!!!!!!!"""##$$%%$%$$$%%%%%%%%%%%$#""""""""!!"!!!!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!$$$$!!!""!$$$&&((((('''&&&&&&&&()*++,------,,,,+*'%""""""""""""""""!!""!!!!!!!"""###$$%%%%$########""""#$##$$$$$#####""#####"!!!!!""!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""!!!!!$$$$"$%$#!&'(((*****(&$!!!!!!!!!"$()*++++*(%$$$$$$"#$$$$#####"""""""!""""#$$##"!!!!!!!!!!!!!""!!!!!!!"""""$$$"""#$$$$$%%$$##!!!!$$$$$$$$$$""#$$##$%&&%$$%&((&&%##""""!!!!!!!!!!!!!!!!!!!!!!!$!!"$&&&&&%%!!"""""""!!!"!!!!$&'*,--...---,+)'&%!!!!!""""""""$%'()*))+./.-,++(&%"!!$$$&&&&%%%%%$$$!!!!"!"!!!!!!!"!!"""""""##"""""""""""""""!$$$$!!"###$$%$""!!!!!!''(())((**++,,+++++**)'&"""!!!!!!!!!!!!!"""!!!!!"""!!!!!!!!!!!!!!!!"!""!$$$$!!!!!!""""!"""#$%%&&$""!!!$%%%%%%%$$ a score=2826 EG2=2.4e+05 E=0.00014 fullScore=1.43e+04 s chrM 4987 1395 + 16775 CATACCAATCAGCTACGC-------------CGGCCTCCCCCCAATCTAAGGAAGCGTGCCTGAA-----CAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAA----------------------------------------------------AAGTAGGAATCGAACCTACACAGAAGAGATCAAAA----------------CTCTTCATACTC--CCTCTATATTATTTTCTAGT--AAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCC---------------------------------------------------------------TTCCCCTACTAATGAACCCCCATGCAAAAC-------------TAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATC--------------TTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCAT-------CCCCCTCATCTCCAAGTCACACCACCCCC-----------------GAGCGAT-TGAAGCCACTATCAAATATTTCCTC------------------------------ACCCAATCAACTGCATCAGCCCTAATCCTCTTCTC--------GAGC------ATAACCAACGCCTGATCCACCGGACAAT------------------GAGACATTACACAACTAAACCACCCGACATCAT----------------------------------------------GCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATT--------------------------------CCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTC-----------------------------------CTCCTCCTAACATC-------ACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGA----------------------------------------------------ATGGGCCTAAACCAAACACAAACACG---------------------AAAAATCCTAGCCTTCTCATCCATCTC---CCATTTAGGATG-----AATAATTATAATTATCTCCTATAA---------CCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTA----------------------TGACCTCAA------------CTGT-----ATTCCTATCCC---TAGCCCAAATCAA---------AGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCT----------------------------------------------------------------------------------CCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTC--------------------CTAAGCCTATTCTTCTACCTCCGAC---------------TTGCATACCACTCAACAATCACACTCCCCCCCAA--------------------------------------CTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCT------------------------AAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACT----------------------------------------------------------------------------------------------------ATAGAAACTTAGGATTAAC-----------TGTCACCAAACCAAAGGCCTTCAA-------------------AGCCTTAAATAAGAGT-----------------TAAACTCTCTTAGTTTCTGCCCAACTAAGACCAACAGGAC-----------------------ATTAAC s chrM 13201 1432 + 16775 CTTCCTAATCAGC-----CTAATCCCAACAACAATCTTCATCCACTC------------------AGGGGCAGAAAGCATTGCC------------------------------------------------------ACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGA----------------------------CATATACTCCATAATATTCTT-------CCCCATTGCACTATTT------GTA------------------------------------------------------ACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTAC---------------------CTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACA--------------------------TATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCA----------------TGTCATTCCTTCTCAT--------------------TGGATGATGACAAGGACGAG----CTGAAGCCA-----------------ACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGC---------------CTCATCCTAAG-CATAGCATGACTAG--------------------CCTCTTCCCTAAACACCTGAGAAATT-------------------------CAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAATCCTA--------------------------------------GCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAG--------------------TAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAG------------------------------------------------------------CCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGC--------------------TCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTC---CACTTCAAGCCAACTAGGC--CTCATAATAGTCACAATTGG---------CCTAGACCTCCCCCAACTAG------------------------------CCTTCCTCCACATCTCAACCCATG-------CCTTCTTTAAAGCT--ATATTATTCCTATG--CTCCGGCCTA------ATTATCCACAGCC-----------------------------------------------------------------------TCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTA---------------------------------------------------AACACCTCATACATCAATACCTGAGCCC-----------------TCTCACTTACACTACTT--------------------------------GCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAAC------------CCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCT------------------------------------------------------CCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACT----------GCTGCCATCATTGTTA-------------------CAACCCTAGGAATTATCCTAGCCCT----------AGAACTCTCAAGCCTATCATACTCCCTCA----------------------------CTCCCCCAAAACACAATCCCCTCATAAAC p $$$$%%&''''&$!!!!!"#$$$$###""""$$$%%%%%%%%%%$$$"""""#$$%%%%%%%$##!!!!!%%&&'''&&&%$$$"""######"""""""######"!!!!!!!!!!!!!!!!!!!!"""""""##""!"""""!!!!!!!!!!!!!""""""""""!"""####""!!!!!""!!!!!!$$$%%%$###$$##""""""#$%%%&&&%$$#"""!!!!!!!!!!!!!!!!$$$$$"$$$$#!!!$$$%&&&'''''&$#$$$"!!!$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""""""!!!!!!!!""""""!""!!""""!""""""""""##""""""""""#"!!!!!"""""""""###""!!!!$$$$$$%%$!!"""""!!!!"$$%%'''&"!!!!!!!!!!!!!$%&''''((((((((((()()))))((''&%%%$$$!####""!!""$&%&%###"#$$$#"!!!!!!!!!!!!!!$(***+-/0//011//110..-,*&%'''('''%%#""##!!!!!!!!$$$%&'''&""#""!!!!!!!"""####"!""""""!!!!!!!!!!$$$!$$#!(**+*)'%!!!"!!!!!!!!!!!!!###$%%%%%$#####$$$#"!!!!!!!!!!$%%%&&&&%%%%%&&&%%%$!"""""!!!""""""!!!!!!!!$$$!!"!!!"$$$%%%%$!!!!!""!!!!!!!!!!!!!!!"""""""""""!!""!$$$$$$$$!!!!!!!!!!!!!!!!!!!!!!!!!"!!!!""!!!!!!!!!!!"""#$%%$$########$$%%%$%$$$$%&'''''&&%%!!""!!!!!!!!!!!!!!!!!!!!""#"######$$#"!"""""!!!!""!!!!!!!"!!!!!!!!!!!!%&((((),132335798666432211478830/-,,,,,,.23367~~~~~~~~2200220.,,+***)'$!!!!!!!!!!!!!!!!!!!!##%%&&&''%$$$%%%$$$#""!"""""!!!!""!$$%%&'''&&&&%$$$##$$#$%%%""#"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""####$%%%%$#$$#!!!!!!!!""""#"""###"""#$$##"!!!!!!!!!!!!!!!!!!!!!!!!$%%%%%!!!!!!!!!!!!!!!""""""!!!!!!!!!!!!!!!!""!!$&'(+010225531/,&$%#"$%$$$$%&%&((()***($!"##$""$%&&&'())**)(&$"""!!!!!!!!!!!!!""$$%%&&&%%$$"""""""""!!!!!"!!!!!!!!!!""""!!!!!!!!!!"!""""!"!"""!$$""""""!!!!!"$$$$#""$$!!!""""$&'****($!!!!!$$%%%$$!!!!!!!#####"!!$$$$!!!!"""""""!!!!"""""""""""""!!!!!!!!!!!!!!!!!""""""""""!"""###"!!!!!!!!!!!!"##"""!!!!!!!"!!""""""""#########""""!!!!"""#""!!!!!!!!!""""""""!!!!!""#$%%$$$$%%%&&&&&&&&&&&%%%%&&'&&&'()****++**)%%%%&&&&&%%&&'()))*))(('&&&%%$""##$$$$%&&%%%%$#"""###$%$######""""###"""#$$$$$##"!!!!!!!!!!!!!!!!!!!!$%%%%%$$""!!!!!!!!"""""!!!!!!!!!!!!!!!!!$$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"""!"""""!!!"""!!!!!"!!!"!!!!!!!""""!$%%&&&&&&&&&&&&&&&&&&&&&&&&&&$!!!!!!!!"!!!"#""!""""$#""""#$&%%%%%$$')+,,,,,,+++,,,,+)'%!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!%&%%%%%&%%%%$$$%%%%&'''&%%$$$$$$$$$$$$$""!!!""###$$$#""""#$##""!!!!!""$%&&$#######""!!!!!""######"""%%&&'''&%"##""""""!"""""""""""$$$$$!"!!!!!!!!!!!!!!!!!"!!!!!!!!!""""#""""$$$$$$"""#####""!!!"####"!!""#"""$$$%&&&&&%%%"""""##"!!""##"""""""""""""!!!!!!!!!!!!!!!!!"""""""$$$$$$ a score=2826 EG2=2.4e+05 E=0.00014 fullScore=1.43e+04 s chrM 13201 1432 + 16775 CTTCCTAATCAGCCTAATCCCAACAA-----CAATCTTCATCCACTCAGGGG------------------CAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAA------------------------------------------------------AAATAGACATATACTCCATAATA----------------------------TTCTTCC-------CCATTGCACTATTTGT------AACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTC------------------------------------------------------TTTACCTACCTACTCACCTTCC---------------------TCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTT--------------------------GTAGGATGAGAAGGAGTAGGAATCATGTCATT----------------CCTTCTCATTGGATGATGACAAGGAC--------------------GAGC----TGAAGCCAACACAGCTGCACTACAGGCAATAATCTACA-----------------ACCGAATCGGAGACATTGGCCTCATCCT---------------AAGCATAGC-ATGACTAGCCTCTTCCCTAAACACCT--------------------GAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTG-------------------------GCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCT--------------------------------------TCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCAC--------------------CCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAAC------------------------------------------------------------ATGCGCTCTCACTCAAAACGACATCAA--------------------AAAAATCATTGCCTTCTC---CACTTCAAGCCAACTAGGCCTCAT--AATAGTCACAATTGGCCTAGACCT---------CCCCCAACTAGCCTTCCTCCACATCTCAACCCA------------------------------TGCCTTCTTTAAAG-------CTATATT--ATTCCTATGCTC--CGGCCTAATTATCCAC------AGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAA-----------------------------------------------------------------------CCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAACACCTCATACATCAATAC---------------------------------------------------CTGAGCCCTCTCACTTACACTAC-----------------TTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAAC--------------------------------CTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGA------------AAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATC------------------------------------------------------ACAAAAACTGCTGCCATCAT----------TGTTACAACCCTAGGAATTATCCT-------------------AGCCCTAGAACTCTCAAGCCTAT----------CATACTCCCTCACTCCCCCAAAACACAATCCCCTC----------------------------ATAAAC s chrM 4987 1395 + 16775 CATACCAATCAGC-------------TACGCCGGCCTCCCCCCAATC-----TAAGGAAGCGTGCCTGAACAAAAAGGATCACT----------------------------------------------------ATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGG----------------AATCGAACCTACACAGAAGAGATCAAAACTCTT--CATACTCCCTCTATATTATTT--TCTAGTA---------------------------------------------------------------AGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTAC-------------TAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCA--------------TCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCA-------ACACCTTAGCCATCATCCCCCTCAT-----------------CTCCAAGTCACACCACCCCCGAG-CGATTGAAGCCA------------------------------CTATCAAATATTTCCTCACCCAATCAACTGCATCAGC--------CCTAATCCTCTTCTCGAG------CATAACCAA------------------CGCCTGATCCACCGGACAATGAGACATT----------------------------------------------ACACAACTAAACCACCCGACATCATGCCTAATATTA--------------------------------ACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAA-----------------------------------AACTCCCCCCAATCACACTCCTCCTCCTAACATC-------ACAG----------------------------------------------------TCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGC---------------------CTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTC---CCATTTAGGA-----TGAATAATTATAATTAT---------CTCCTATAACCCACAACTCA----------------------CTATTCTCACCTTCATCCTCTACACAATTATG------------ACCTCAACT-----GTATTCCTATC---CCTAGCCCA---------AATCAAAGTC----------------------------------------------------------------------------------CTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTA--------------------ACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCT---------------ATTCTTCTACCTCCGACTT--------------------------------------GCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAAC------------------------TAACAAAACCCTAAACACCCCCACCGCCATTCT----------------------------------------------------------------------------------------------------AACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACT-----------TAGGATTAACTGTCA-------------------CCAAACCAAAGGCCTTCAAAGCCTT-----------------AAATAAGAGTTAAACTCTCTTA-----------------------GTTTCTGCCCAACTAAGACCAACAGGACATTAAC p $$$$%%&''''&$"#$$$$###""""!!!!!$$$%%%%%%%%%%$$$!!!!!"""""#$$%%%%%%%$##%%&&'''&&&%$$$!"""""!!!!!!!!!!!!!""""""""""!"""####""!!!!!""!!!!!!"""######"""""""######"!!!!!!!!!!!!!!!!!!!!"""""""##""$$$%%%$!!!!!!!!!!!!!!!!###$$##""""""#$%%%&&&%$$#"""$$$$$!!"$$$$#!$$$%&&&'''''&$!!#$$$"!$""""""!""!!""""!""""""""""##""""""""""#"!!!!!"""""""""###""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""""""""!!!!!!!!$$$$$$%%$!!!!!!!!!!!!!!!"""""!!!!"$$%%'''&"$%&''''((((((((((()()))))((''&%%%$$$!!!!!!!!!!!!!!!####""!!""$&%&%###"#$$$#"$(***+-/0//011//110..-,*&!!!!!!!%'''('''%%#""##!$$$%&'''&!""""""!!!!!!!!!!""#""!!!!!!!"""####"$$$!!$$#(**+*)'%###$%%%%%$#####$$$#"!!!!!!!!!!!!!"!!!!!!!!!!!!!$%%%&&&&%%%%%&&&%%%$!!!!!!!!!"""""!!!""""""$$$!"!!!"!$$$%%%%$!!"""""""""""!!""!!!!!!""!!!!!!!!!!!!!$$$$$$$$"!!!!""!!!!!!!!!!!"""#$%%$$########$$%%%$%$$$$!!!!!!!!!!!!!!!!!!!!!!!!!%&'''''&&%%!"""""!!!!""!!!!!!!"!!!!!!!!!!!!!!""!!!!!!!!!!!!!!!!!!!!""#"######$$#"%&((((),132335798666432211478830/-,,,,,,.23367~~~~~~~~2200220.,,+***)'$##%%&&&''%$$$%%%$$$#""!"""""!!!!""!!!!!!!!!!!!!!!!!!!!!$$%%&'''&&&&%$$$##$$#$%%%!!!!!!!!""""#"""###"""#$$##"!!!!!!!!!!!!!!!!!!!!!!!!""#"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""####$%%%%$#$$#$%%%%%"!!!!!!!!!!!!!!!!""!!!!!!!!!!!!!!!!!"""""$&'(+010225531/,&$%#"$%$$$$%&%&((()***($##$""!"$%&&&'())**)(&$!!!!!!!"""""!!!!!!$$%%&&&%%$$!!!!!!!!!"!""""!"!"""!"""""""""!!!!!"!!!!!!!!!!""""!$$!!!!"$$$$#""""""""!$$!""""!!$&'****($!!!!!$$%%%$$!#####"!!!!!!!!$$$$!!!!"##"""!!!!!!!"!!""""""""#########""""!!!!"""#""!!!!!!!!!""""""""!!!!!""#$%%$$$!!!!"""""""!!!!"""""""""""""!!!!!!!!!!!!!!!!!""""""""""!"""###"!!!!!!!!$%%%&&&&&&&&&&&%%%%&&'&&&'()****++**)%%%%&&&&&%%&&'()))*))(('&&&%%$!!!!!!!!!!!!!!!!!!!!""##$$$$%&&%%%%$#"""###$%$######""""###"""#$$$$$##"$%%%%%$$!!!!!!!!!!!!!!!""!!!!!!!!"""""!!$$!"""!"""""!!!"""!!!!!"!!!"!!!!!!!""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!$%%&&&&&&&&&&&&&&&&&&&&&&&&&&$"#""!""""$#""""#$&%%%%%$!!!!!!!!"!!!$')+,,,,,,+++,,,,+)'%%&%%%%%&%%%%$$$%%%%&'''&%%$$$$$$$$$$$$$""!!!""###$$$#""""#$##""!!!!!""$%&&$#######""!!!!!""######"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!%%&&'''&%""""""""""""##""""""!$$$$$"!!!!!!!!!""""#""""!"!!!!!!!!!!!!!!!!!$$$$$$!!!"####"!!""#""""""#####""$$$%&&&&&%%%!!!!!!!!!!!!!!!!""""""""""""##"!!""##"""""""""""""!$$$$$$ a score=2715 EG2=6.9e+05 E=0.00041 fullScore=1.47e+04 s chrM 11865 1540 + 16775 CCCAACCCTCATCTTAATCACACGCTGAGGAAACC-------------AACCAGA----ACGACTTAGCGCAGGCATTT-------------ACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTC-------------------------------CATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCT----------------------------------------------------------------GCCTCCTGAACAAGCTTATTATCTAGCC---------------------------TAGCTCTCCTAATAG----CCTTTATAGTCAAAGCACC----CCTATACGGACTACA------CCTATGACTGC--CTAAAGCCCATGTAGAAGCACCA----------ATCGCAGGCTCCATACTACTCGCTGCTCTACTAC-------------------------------------TAAAACTAGGCGGATATGGCATCATACGAG------------------------TCACCCTCCTAATGGA----------GCCCGTATCCAACTTCT-------TACACTACCCCTT----CCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCT--------------CTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACC-------------------------------------CAATGATCATTCTCAGGTGCAA----TAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGC-------------------------------------CTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCA-------------------------------ACCCCTCCTACCATTG----------ATATCAGTATGATGATTACTAGCCAACTTAACCAACATG---GCCCTGCCCCCAACCACC--AACCTGATAG---------CAGAACTAACAATTATAGTTG-----CCCTCTTCAACTGATCC---TCCCCCACAATTATCTTAACCGGC-----ACTGCAACACTCCT--AACCGC--CTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCA--------------------TCCCACATCACAACAACCCCCAACTCAAACACTCGAG-----------------------------AACATCTTCTCATAACCCTCCACAT----------------------------------------CATCCC----CATACTAACACTCATCCTCA-AACCAGAACTAATCTCAGGAACCCCTCTATGCAAAC--------------------------------------ATAGTTTAACCCAAACATTAGA-TTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCC-----------GAGGGGAGGCCCAAGCCAGCAAGAACTGCTAA--------TTCCTGCATCTGAGCTTTAAACCTCAGT--------------------CCCCTTAACTTTTAAAGGATAAGAGCAATCCG---------TTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCC-----------------------------------------------------------------------------------------------------------------------------------ATCACCAAAACCATTAAAACC----------------GCCTTCCTAATCAGCCTAATCCCAACA------------------------ACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAA--------------------------------------------------------CTTCAAGA---------TCCCCATCTCCCTAA----------AAATAGACATATACTCCAT----AATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAG--------------------CATCCGA s chrM 15023 1547 + 16775 CCAAATCCTCA------------------------CCGGCCTACTACTAGCC---ATGCACTACACAGC----------AGACACATCCCTAGCCTTCTCCTCCGTAGCCC---------------------------ACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAAC---------------------------------------------------GGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACC-------------------------TCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTC----CTCACACTCATAGCC--------ACCGCCTTTGTGGGCTA--TGTTCTCCCATGG----GGCCAAATATCATTCTGAGG-----GGCCACCGTTATCACAAAC-------------------------CTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAG---------------------------AGTGAGCCTGAGGGGGATTTTCAGT---------------CGACAACCCAACCCTTACCCGATTC--TTCGCTTTACACT-------TCCTCCTCCCCTTTGCAATCGCAGGTAT--------------TACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCG--------------------------------------------ACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGA-CATTCTG--------GGCTTAACTCTCATACTCAC-------------------------------CCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCC---------------------------------------------------AGAAAACTTCACCCCAGCAAACCCACTAGTAACCCC-----------CCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCC--TACGCTCCATCCCCAA-----CAAACTTG----GAGGTGTACTAGCCCTAGCAGCCTCAGT--CCTCATCCTCTTC--CTAATCCCCTTCCTCCACAA--ATCTAAAC----AACGAACAATAACCTT---CCGACCA-CTCTCCCAAACCCTATTCTGACT----------------------------TCTAGTAGCCAACCTTCTTAT------------------------------------CCTAACCTGAATCGGAAGCCAACCAGTAGAACACC-------------------CCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCA----CCATCCTACTTATCCTCTTCCCCACAATCGGAA----------------------------CACTAGAAAACAAAATACTCAACTACTAAAATACTCTAATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTT-------AGAGTATCAGAAAAGGAGGGCTCAAACCTCC------------ATCTCCAGCTCCCAAAGCTG----------------GTATTTTCAAATAAACTACTCTCTGAAACCCTTAAA----------------CCGCCCGAATTGCCCCCCGAGACAACCCA--------------------------------------------------------------------------------------------------------------------------------------CGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATC------------------AACAGTAACCACCCCCACCTTT---------------------CAAAAATCAACGAGCCCTCCCAGAACCACCCCCAT------------------------------------------------------TCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAGCCTCA---GGATAAGGATCCGCAGC-------TAATGACACAGAATAAACAAAAAC-----CACCAACATCCCCCCTAAATACACCAAAAATAA------------------------------------CGCCAAGGAAACAAAAGAAACACCCAA p $$$$$%%%%$$!!""##""""""""#$%&&%$""!!!"""""!!!!!!$$$$!""!#!!$%%%%%%%$$"!!!!!!!!!!!!!!!!"###""$&'()))((((((''%%%$"#$$####""""!!!!!!!!!!!!!!"!"!!!!!!"$%&%$$##"###########"!&)***)))+,--......-+(%##"""""!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!"""""###""""""!!"""#""""""""""""""""####$$$#"!"""""""#$$##"!!$$$!!!!!!!!!!!!"""""""""!!!!!!"""""####""!!""""""""""""$$$%%%%%%%$""""!!!!$$$$$%%%%$$!"#"""""!!!"$%&&'(())))('!!##%%#"%&&&&&$$$!!!!$$%%%%%&&'&%%%%%%$!!!!!!""!!##$&%%&&&&&%%$"""""!!!!!!!!!!!!!!!!!!!!"""""""""""#"""!!!!!"###$%%$$$$$#"!!!$$$!!!!!!!!!!!!"""""""""""""""""""""""""""!!!!!"""!!!!$!!!!""#####%&%#!!!!!!!!!!$(*++--,,,+*&%$!!""#$#"!$$$$$$!!!!!!!!!!!$$%%%%%&&&&%%$$$$%'(('&$!!!!!!!!!!!!!!!"!!!!!!!!!!!!$$)+,-.013776434447752/,+*)&$$$$$$$$%%&&'''~~~~~~~~####""""##$$##"""""""""""""""""""!!!!!!""""!"###""""""""""!!!!!!!!!!!!!!!!"""""""$$$$$$$%'((''$""""$%%$!!!!&'())***+**)((%$!!!!""!!!!!!!!!!!!!!""""!!!!!"!!!""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!!$$$$$$$$$$$!"""""####$###""""""###########""""###""##""####""!!!"!!!!!!!!!!!!!!!!!!!!!!!""#""$$$$$!!!!!!!!"""!!!!!!!!!!$%)*,.1145553/...---,((('&&&%%&&&&%$$""!!"%&&&&&''''''%"###"!!$%&&&%!!!!"#$$$#"""$$%%%&'''''''&&&&&$!!###""$%&&&&&%%%&(()(&%###$%&'()**)'%%%%&&%%$$!!!!"""""$$$$%%&%$$$!!!!!$$$$$!!"%&&&''''(''&%%$$$$$$$!!!!!!!!!""""#$$$$#""!!!!!!!!!!!!!!!!!!!!!!!!!"!$!!!""""""""""""""""""!"""!!!!!""##!!!!!!!!""""!!!""""""!!!!!!!!!!$$$$$$!!!!!!!!!!!!!!!!!!!!!!!!"""""##$%&&%%%%$$$$###"""""#$$#""""$$!!!!!!!!$$%&&&&'''''''''''&%$$$%%%%%$!"""""""!!!!!!!!!!!!!""""""""##"############"!!!"""!""""""""#$%%$$%(+,--,*(((),.1442/*)$"&'**))'&&%%%%%%%$$$$$%&&'())))(((&!!!!!!!#$&%$#!!!!"$%%&&&')+--..,*(&$$$"#$#"!!!!!!!""""""!!$$$$$$$$$$$$!!!!!!!!!!"""""!""!!!""#####""""""!!$$$$$$%&&&&&&&%$#$$$$$$$$##"""""!!!""""##$%%%%%%%%%%&&&&&&%%$"####!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!""""""""""!!!!!!!!!!!!!!""!!!!!"!!"!!!"""""""""""!!!!!!""""""""""""""""!!!!!!!!!!!!!!!!!!!"###!!"#"###"""!!!!!!!!!!!!!!!!!!!!!!!!"""""!!!!!!!"""""!"!"""""""""""!""!!!!!!"""""""""""!!!"!""!!!!!!!!"""!!""#$$%%%$#"""""""!!!!!!!!!!$$$!!!!!!!!!!"""##"!!!!!!""!!!!!!!!!!$$$$$$!!!!!!!!!!"#"!!!!!!!!!"###"!!!""""!!!!!!!!!!!$$$$$$$$$$$!!!!!!!"""""""!!!!!!!!!!!!!!!!!"#$$$$###""""###"!!!!!!"""##"""!!!!!!!!!!!""""""###$##"""!!!!!!!!!!!!!!!!!!!!!"$%%%$!!!""##$##""$%%%%%$$!""!!!!!"#######"$%&''''''&&%%$"!!""!!!!%&&''&&&&&&&&&&'''''&&$$$$$$$"#$$$$$##$$$$####%%$#"!!"!""!""""#""!!!!!!!!!!!!!!!!!!!!$$$$$$$ a score=2715 EG2=6.9e+05 E=0.00041 fullScore=1.47e+04 s chrM 15023 1547 + 16775 CCAAATCCTCACCGGCCTACTACT------------------------AGCCATGC---ACTACACAGCAGACACATCCCTA----------GCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACT---------------------------CATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCT---------------------------------------------------ACCTCTACAAGGAAACCTGAAACACAGGAG-------------------------TAATCCTCCTCCTCA----CACTCATAGCCACCG--------CCTTTGTGGGCTATGTTCT--CCCATGGGG----CCAAATATCATTCTGAGGGGCCACCGTT-----ATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAG-------------------------TAGAGTGAGCCTGAGGGGGATTTTCAG---------------------------TCGACAACCCA---------------ACCCTTACCCGATTCTTCGCTT--TACACTTCCT-------CCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACC--------------TCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTT--------------------------------------------CAAAGA-CATTCTGGGCT--------TAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTC-------------------------------CTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTA---------------------------------------------------ACCCCCCCACATATC-----------AAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTAC--GCTCCATCCCCAACA-----AACTTGGAGGTGTAC----TAGCCCTAGCAGCCTCAGTCCTCA--TCCTCTTC--CTAATCCCCTTCCTCCACAA--ATCTAAACAACGA----ACAATAACCTTCC---GACCACT-CTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTA----------------------------TCCTAACCTGAATCGGAAGCCAACCAGTAG------------------------------------AACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTT-------------------CACCAT----CCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACTCTA----------------------------ATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTTAGAGTATCAGA-------AAAGGAGGGCTCAAACCTCCATCTCCAG------------CTCCCAAAGCTGGTATTTTCAAATAAACTACT----------------CTCTGAAACCCTTAAACCGCCCGAA----------------TTGCCCCCCGAGACAACCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCC--------------------------------------------------------------------------------------------------------------------------------------ATCAACAGTAACCACCCCC------------------ACCTTTCAAAAATCAACGAGCCCTCCCAGA---------------------ACCACCCCCATTCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAG------------------------------------------------------CCTCAGGATAAGGA---TCCGCAGCTAATGACACA-------GAATAAACAAAAACCACC-----AACATCCCCCCTAAATACACCAAAAATAACGCCAAGGAAACAAAAGAAA------------------------------------CACCCAA s chrM 11865 1540 + 16775 CCCAACCCTCA-------------TCTTAATCACACGCTGAGGAAACCAACC----AGAACGACTTAGC-------------GCAGGCATTTACCTTCTATTCTATACCCT-------------------------------AATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAAT----------------------------------------------------------------ACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCC---------------------------TCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTA----ATAGCCTTTATAGTC----AAAGCACCCCTATACGGACTA------CACCTATGA--CTGCCTAAAGCCCATGTAGAAG----------CACCAATCGCAGGC-------------------------------------TCCATACTACTCGCTGCTCTACTACTAA------------------------AACTAGGCGGATATGGCATCATACGAGT----------CACCCTCCTAATGGAGCCCGTATCCAACTT-------CTTACACT----ACCCCTTCCTCACCCTAGCCCTATGAGGTGC--------------CCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCG-------------------------------------TAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTC----AGGTGCAATAATCCTCATAATCTC-------------------------------------CCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACAC-------------------------------AAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCC----------TCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACA---TGGCCCTGCCCCCAA--CCACCAACCTG---------ATAGCAGAACTAACAATTATAGT-----TGCCCTCTTCAACTGATCC---TCCCCCACAATTATCTTAAC-----CGGCACTGCAACACT--CCTAACCG--CCTCTTACACCCTCTACATACT--------------------ACTCTCAACCCAACGAGGCACTCTTCCAT-----------------------------CCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATC----------------------------------------TTCTCATAACCCTCCACATCA----TCCCCATACTAACACTCATCCTCA-AACCAGAA--------------------------------------CTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGA-TTGTGATTCTAAAAATAGGAGTTTAACCCTCCTT-----------GTTCGCCGAGGGGAGGCCCAAGCCAGC--------AAGAACTGCTAATTCCTGCATCTG--------------------AGCTTTAAACCTCAGTCCCCTTAACTTTTAAA---------GGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTA-----------------------------------------------------------------------------------------------------------------------------------TCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATC----------------ACCAAAACCATTAAAACCGCCTTC------------------------CTAATCAGCCTAATCCCAACAACAATCTTCAT--------------------------------------------------------CCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCA---------AGATCCCCATC----------TCCCTAAAAATAGACATATAC----TCCATAATATTCTTCCCCATTGCACTATTTGTAA--------------------CCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGA p $$$$$%%%%$$!!"""""!!!!!!!!""##""""""""#$%&&%$""!$$$$!#!!!""$%%%%%%%$$!!!!!!!"###"""!!!!!!!!!$&'()))((((((''%%%$!"!!!!!!"$%&%$$##"###########"!"#$$####""""!!!!!!!!!!!!!!"&)***)))+,--......-+(%!!!"""""###""""""!!"""#""""""""""""""""####$$$#"!"""""""#$$##"!!##"""""!!!!!!!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!$$$!!"""""####""!!""""""""""""!!!!!!!!!!!!"""""""""!!!!$$$%%%%%%%$!!!!""""$$$$$%%%%$$!!!"!"#"""""$%&&'(())))('##%%#"!!%&&&&&$!!$$!!$$%%%%%&&'&%%%%%%$!""!!##$&%!!!!!%&&&&&%%$"""""""""""#"""!!!!!"###$%%$$$$$#"!!!"""""!!!!!!!!!!!!!!!!!!!!$$$""""""""""""!!!!!"""!!!!!!!!!!!!!!!!"""""""""""""""$!!!!!!!!!!!!!!""#####%&%#$(*++--,,,+*&%$""#$#"!!!$$$$$$!!!!!!!!!!!$$%%%%%&&&&%%$$$$%'(('&$!"!!!!!!!!!!!!!!!!!!!!!!!!!!$$)+,-.013776434447752/,+*)&$$$$$$$$%%&&'''~~~~~~~~"###""""""""""!!!!!!!!!!!!!!!!"""""""####""""##$$##"""""""""""""""""""!!!!!!""""!$$$$$$$%'((''$!!!!""""$%%$&'())***+**)((%$!!""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""!!!!!!!!!!!!!!""""!!!!!"!$$$$$$$$$$$!!"!!!!!!!!!!!!!!!!!!!!!!!""#""!"""""####$###""""""###########""""###""##""####""!$$$$$!!!!!!!!!!!!!!!!!!"""$%)*,.1145553/...---,((('&&&%%&&&&%$$!!"""%&&&&&''''''%!!"###"$%&&&%"#$$$#"""!!!!$$%%%&'''''''&&&&&$###""!!$%&&&&&%%%&(()(&%###$%&'()**)'%%%%&&%%$$"""""!!!!$$$$%%&%$$$!!!!!$$$$$!"!%&&&''''(''&%%$$$$$$$!!!!!!!!!!!!!!!!!!"!!!!!!!!!!""""#$$$$#""!!!!!!!$!!!!!!""""!!!""""""!!!!!!!!!!!!!""""""""""""""""""!"""!!!!!""##!!$$$$$$!!!!!"""""##$%&&%%%%$$$$###"""""#$$#""""!!!!!!!!!!!!!!!!!!!$$!!!!!!!!$$%&&&&'''''''''''&%$$$%%%%%$"##"############"!!!"""!""""""""#$%%$$!"""""""!!!!!!!!!!!!!"""""""%(+,--,*(((),.1442/*)$"&'**))'&&%%%%%%%$$$$$%&&'())))(((&#$&%$#!!!!"!!!!!!!$%%&&&')+--..,*(&$$$""""""!!"#$#"!!!!!!!$$$$$$$$$$$$""!!!""#####""""""!!!!!!!!!!!!"""""!$$$$$$%&&&&&&&%$!!!""""###$$$$$$$$##"""""$%%%%%%%%%%&&&&&&%%$"#"###"""!!!!!!!!!!!!!!!!!!!!!!!!"""""!!!!!!!"""""!"!"""""""""""!""!!!!!!"""""""""""!!!"!""!!!!!!!!"""!!""#$$%%%$#"""""""!!!!!!!!!!"####!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!""""""""""!!!!!!!!!!!!!!""!!!!!"!!"!!!"""""""""""!!!!!!""""""""""""""""!!!!!!!!!!!!!!!!!!!"###!!$$$!!!!""!!!!!!!!!!!!!!!!!!!!"""##"!!$$$$$$!"###"!!!""""!!!!!!!!!!!!!!!!!!!!!"#"!!!!!!!!$$$$$$$$$$$"""##"""!!!!!!!!!!!""""""###$##"""!!!!!!!!!!!!!!!!!!!!!"!!!!!!!"""""""!!!!!!!!!!!!!!!!!"#$$$$###""""###"!!!!!!$%%%$""##$##""!!!$%%%%%$$!"#######"!""!!!!$%&''''''&&%%$!!!!"!!""%&&''&&&&&&&&&&'''''&&$$$$$$$!!!!!!!!!!!!!!!!!!!!"#$$$$$##$$$$####%%$#"!!"!""!""""#""$$$$$$$ a score=2674 EG2=1e+06 E=0.0006 fullScore=8.57e+03 s chrM 3803 585 + 16775 GAGCAATCCAGGTCGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACT------------------------------------------------------GAGCACACCCCAACC--------------TTCTAAGCAATGAATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAA------------------------------------------------------------------GGCTTAAGCCCTTTAT-----------------CCAGAGGT---TCAAATCCTCTCCCTAGCTACCCCGGACATGACCCTG-------------CCCACCCTAACAAACCT----TCTAATCATAACCT----TATCCTAT--------ATTCTCC------CCATCCTAATCGCCGTGG----------CCTTCTTAACACTT----GTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCC---TTTTGGTCTACTCCAAC----CCGTTGCAGACGGGGTAA----------AACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTC---------------------------CCCCTTCCTCTTC------ATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTT---GAGTCCCCCTCCCACTACCATTCCCCCTTGCAGA-----------------------------------CCTCAACCTAGGACT--------------------ACTATTTCTCCTA s chrM 5391 596 + 16775 GAGCGATTGAAGC----------------------------------------------------------------CACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATA--------ACCAACGCCTGATCCACCGGACAATGA-----------------------------------------------------------------------------------------GACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCC------CATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCAC----------------TGCCCTACTACTCTCCACCCTAATAAAAC-TCCCCCCAATCACAC---TCCTCCTCCT--AACATCACAGTCTC-TTAATACCACCTTACTCACC----CTCCTAGCAATCTCCTCCACCCT-AATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTA--------------GCCTTCTCATCCA-------TCTCCCATTTAGGAT-------GAATAATTATAATTAT----------------------------------CTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAA------TCAAAGTCCT---------------------------AAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCA----------ATACTAAATGCAACTGTAATACTAACCCTCCTC p $%%%%%%$$$$$$!!""""!!!!!""###""!!!!!!!!""""""#""""""!!""""""""""""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"!!"""""#$$##%&&&&%%!!!!!!!!"""####"""""""$$%%%&'(((('%!!!!!!!!!!!!"#$$$$$#########""""!!!!""""""""""""""##$#$$###"""""####"###$$###""!!!!"""""!$#$#$#"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!!!!!!!!!!!!!!""!!!""!$$$$$$$$$$!!!!!!"""#$%%%%$%%&%$$#&)+,+*)$%&#%&)))***+,./00.,'%%$$!"#$$$##"""!!!!"!"!!!!!!!"!!!$*-35788631.,)$$!#""#$%',..-,*($!!!"""!$$%%%$!!#$%%$%$#$$%%%$!"%&&&%$%&&&&&&&&&&%$!!!!##$$$$""""$%%%&&&%&%$$$!"""!$$%%%%&'''''((034544422011122211110.,*('&&&%$$%&&&''''&%$"!!!!$$$$$$$$$$"!""$$"!!!!$%&&&$$$$$$!!!!!!!!!""""""""$$$$$$!!!!!""#$$$#""##""""!!!!!!!!!!!!!!"""!!!!!!!!!!!!!!!!!!!!!!!!%'~~~~~))(''%&''(('&)*+++,------++******++,++,,,,,,+*'&%"""###!!!&())(&$!!!!!!!!!!!!!!!!!!!!!!!!!!!$&%#!!!!!!!!!!!!!!!"!!!!"""#####""!$$$$$!!!!!!!!!!""#""##$$$$$####"""!$$$$$$$$$$$$$ a score=2674 EG2=1e+06 E=0.0006 fullScore=8.57e+03 s chrM 5391 596 + 16775 GAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTC----------------------------------------------------------------GAGCATAACCAACGCCTGATC--------CACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTA-----------------------------------------------------------------------------------------GGACTAGTCCCATTCCACTTCTGATTC------CCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTC----------------TCCACCCTAATAAAACTCCC-CCCAATCACACTCCT---CCTCCTAACATCAC--AGTCTCTTAATA-CCACCTTACTCACCCTCCTAGCAA----TCTCCTCCACCCTAATC-GGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCC--------------TTCTCATCCATCTC-------CCATTTAGGATGAATAATTAT-------AATTATCTCCTATAACCCACAACTCACTATTCT----------------------------------CACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAATCA------AAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAA---------------------------CCCCAATACTAAATGCAACTGTAAT----------ACTAACCCTCCTC s chrM 3803 585 + 16775 GAGCAATCCAGGT------------------------------------------------------CGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACA--------------CCCCAACCTTCTAAGCAATGA------------------------------------------------------------------ATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCC-----------------CTTTATCCAGAGGT---TCAAATCCTCTCCCTAGCTAC-------------CCCGGACATGACCCTGCCCACCCTAACAAACC----TTCTAATCATAA----CCTTATCCT--------ATATTCTC------CCCATCCTAATCGCC----------GTGGCCTTCTTAACACT----TGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCA---AACATTGTGGGCCCTTTTGGTCTA----CTCCAACCCGTTGCAGAC----------GGGGTAAAACTAT---------------------------TCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTCCTCTTC------ATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGA---CTATTTGAGTCCC-----------------------------------CCTCCCACTACCATTCCCCCTTGCAGACCTCA--------------------ACCTAGGACTACTATTTCTCCTA p $%%%%%%$$$$$$!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"!!"""""#$$##!!""""!!!!!""###""!!!!!!!!""""""#""""""!!""""""""""""!!!!!!!!!!!%&&&&%%"""####"""""""!!!!!!!!$$%%%&'(((('%$#$#$#"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""""!!!!!!!!!!!!!!!!!""!!!""!!!!!!!!!!!!!"#$$$$$#########""""!!!!""""""""""""""##$#$$###"""""####"###$$###""!!!!"""""!$$$$$$$$$$"""#$%%%%$%%&%$$#!!!!!!&)+,+*)$%&#%&)))***+,./00.,'%%$$!"!!!!!!!"!!!!"#$$$##"""!!!!"$*-35788631.,)$$#""#!$%',..-,*($"""!!!!$$%%%$#$%%$%$#!!$$%%%$"%&&&%!$%&&&&&&&&&&%$##$$$$""""!!!!$%%%&&&%&%$$$"""!!$$%%%%&'''''((034544422011122211110.,*('&&&%$!!!$%&&&''''&%$"!$$$$$$$$$$!!!!"!""$$"$%&&&$$$$$$!!""""""""!!!!!!!$$$$$$"""!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""#$$$#""##""""!!!!!!!!!!!!!!%'~~~~~))(''%&''(('&)*+++,------++******++,++,,,,,,+*'&%!!!"""###&())(&$$&%#!!!!!!!!!!!!!!!"!!!!"""#####""!!!!!!!!!!!!!!!!!!!!!!!!!!!!$$$$$""#""##$$$$$####"""!!!!!!!!!!!$$$$$$$$$$$$$ a score=2768 EG2=4.2e+05 E=0.00025 fullScore=3.41e+03 s chrM 3957 89 + 16775 AAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAAT------GCAAAAGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTACCCCG s chrM 10123 86 - 16775 AAGGTCACAGGTAAGATGGCTGAGT---------GTTGAAGCGTTAGGCTGTAGTCCTTTTTACAGAGGTTCAATTCCTCTTCTTATCGACTCTG p $$%%%%%)***++**+,--,++*)%###"#""""!!!!!!&&&''*-/0/..02245544245~~~~~~~~~~~;<==<:75421/,,**)('&% a score=2768 EG2=4.2e+05 E=0.00025 fullScore=3.41e+03 s chrM 6566 86 + 16775 CAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAAC---------ACTCAGCCATCTTACCTGTGACCTT s chrM 12729 89 - 16775 CGGGGTAGCTAGGGAGAGGATTTGAACCTCTGGATAAAGGGCTTAAGCCTTTTGC------ATTTGCCGAGCTCTGCCACGCTAGCTGGATCCTT p %&'()**,,/12457:<==<;~~~~~~~~~~~54244554220../0/-*''&&&!!!!!!""""#"###%)*++,--,+**++***)%%%%%$$ a score=98759 EG2=0 E=0 fullScore=9.88e+04 s chr32 0 1028 + 1028 CATCTAAACCAACACCTAATCCTAAACCTAAGGCCTTCCGGAATCCTAAACCTAAGCCAACAGctaaccctaacccatcccctaacccaatccatagccctaagcttaagcctaaccctaagccaaaccctagccctaaccatagccccaactccagcactaaccgtaatggtaaacttaatgataatcctaaccctaacacaaaccctTCTTTCCGGAGCTGGGGAAACCGACTCCAGAAATGCCATCTGAGGGAACAGACGTCCTGGCAGATAGAACAAACCAGGTGTGAGCACTGTCTTTCCAAAGTTACACCGAAGCCGTTGGAGGACAGGTCGGACCTCAGGCCTTCCCGCGGCACCAACTACTGTCGGCGGATTTGCGCATAGATCCTTCACAGCTGTTTCAAAGAACCATTCTGTGATTCTATGATCTTCCAGGACCCTTCCAAGCCACACCATCCTGTGGTTCTatcatcttccaggactcttgcaacacaaaccattctatggttctgtgatCACTAAGGAACCTCCCAAGCCACGCCGTCCTGCAGTTCTGtgatcttccaggacccttccaacacggaccatcctatggttctatgatCTTCCAGGACCCTCCTGTGCGGGTGATGTCACCATGACGTGATGACCTCACAGATGCCCTGGGGTGGGGCAGGGGCAGTGGGTCAGCGCGGAACCTGCTGGCCCCATTCTGCGGGTGGTGCTGGTCCAGCGAGGAGCTGTGCGAGTGGTGCAGTAATGCGGGCCCAGTGTGTCAGCAGAAGATTAAGGGCGGTGTGGCGTGCGAAGCTGGTGGAGGAGGAGCTGCTGGTGAGCTCTGGGTGCACAGACACAGAAGGGCCGGCGGGGGGAGCTGCCGGCTGGAGGCAGCAGAGGGCCGGGCACCTCCGGTGGGATGCAGAGCTGCCGGCAGCACCTCGGTGCCAACGCTGCTCCTCTCCCTTCACACAGGCTCATGCGGCCGTGGAGAAGTGCAAGGCCGTGGCCAGGGAATCCTTGATG s chr32 0 1028 + 1028 CATCTAAACCAACACCTAATCCTAAACCTAAGGCCTTCCGGAATCCTAAACCTAAGCCAACAGctaaccctaacccatcccctaacccaatccatagccctaagcttaagcctaaccctaagccaaaccctagccctaaccatagccccaactccagcactaaccgtaatggtaaacttaatgataatcctaaccctaacacaaaccctTCTTTCCGGAGCTGGGGAAACCGACTCCAGAAATGCCATCTGAGGGAACAGACGTCCTGGCAGATAGAACAAACCAGGTGTGAGCACTGTCTTTCCAAAGTTACACCGAAGCCGTTGGAGGACAGGTCGGACCTCAGGCCTTCCCGCGGCACCAACTACTGTCGGCGGATTTGCGCATAGATCCTTCACAGCTGTTTCAAAGAACCATTCTGTGATTCTATGATCTTCCAGGACCCTTCCAAGCCACACCATCCTGTGGTTCTatcatcttccaggactcttgcaacacaaaccattctatggttctgtgatCACTAAGGAACCTCCCAAGCCACGCCGTCCTGCAGTTCTGtgatcttccaggacccttccaacacggaccatcctatggttctatgatCTTCCAGGACCCTCCTGTGCGGGTGATGTCACCATGACGTGATGACCTCACAGATGCCCTGGGGTGGGGCAGGGGCAGTGGGTCAGCGCGGAACCTGCTGGCCCCATTCTGCGGGTGGTGCTGGTCCAGCGAGGAGCTGTGCGAGTGGTGCAGTAATGCGGGCCCAGTGTGTCAGCAGAAGATTAAGGGCGGTGTGGCGTGCGAAGCTGGTGGAGGAGGAGCTGCTGGTGAGCTCTGGGTGCACAGACACAGAAGGGCCGGCGGGGGGAGCTGCCGGCTGGAGGCAGCAGAGGGCCGGGCACCTCCGGTGGGATGCAGAGCTGCCGGCAGCACCTCGGTGCCAACGCTGCTCCTCTCCCTTCACACAGGCTCATGCGGCCGTGGAGAAGTGCAAGGCCGTGGCCAGGGAATCCTTGATG p ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # Query sequences=2 normal letters=17803 >chrM AATTTTATTTTTTAACCTAACTCCCCTACTAAGTGTACCCCCCCTTTCCCCAGGGGGGGTATACTATGCATAATCGTGCATACATTTATATACCACATATATTATGGTACCGGTAATATATACTATATATGTACTAAACCCATTATATGTATACGGGCATTAACCTATATTCCACATTTCTCCCAATGTCCATTCTATGCATGATCTAGGACATACTCATTTACCCTCCCCATAGACAGTTCCAAACCACTATCAAGCCACCTAACTATGAATGGTTACAGGACATAAATCTCACTCTCATGTTCTCCCCCCAACAAGTCACCTAACTATGAATGGTTACAGGACATACATTTAACTACCATGTTCTAACCCATTTGGTTATGCTCGCCGTATCAGATGGATTTATTGATCGTCCACCTCACGAGAGATCAGCAACCCCTGCCTGTAATGTACTTCATGACCAGTCTCAGGCCCATTCTTTCCCCCTACACCCCTCGCCCTACTTGCCTTCCACCGTACCTCTGGTTCCTCGGTCAGGCACATCCCATGCATAACTCCTGAACTTTCTCACTTTTCACGAAGTCATCTGTGGATTATCTTCCCCTCTTTAGTCCGTGATCGCGGCATCTTCTCTCTTCTATTGCTGTTGGTTCCTTCTCTTTTTGGGGCTTCTTCACAGGTTACCCTTCACAGTGCGGGTGCGAGTGCTATTCAAGTGAAGCCTGGACTACACCTGCGTTGCGTCCTATCCTAGTCCTCTCGTGTCCCTCGATGAGACGGTTTGCGTGTATGGGGAATCATCTTGACACTGATGCACTTTGGATCGCATTTGGTTATGGTTCTTCCACCCCCCCGGTAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATTTTCACTTCCTCTATTTTCTTCACAAAACTAGGAAATTCACCACAAttttttctttgttattttttaattttttttttattttttAAAAACATTTTTTAAAAAACTAAATTACATACAAACTACCGCATAAAATCCCTCAAACTATACAAACGTTTATCGTATAATATATATACATTATTGTTTATTCTATCATTATTAGAGAAACTCCACTACCAAAACCATCATTAAAACAAAAATTTACATGCCACTTAACTCCCCTCACAAACAATCGTTATTTATATTGTTAATTAGCAAACACAAAACCCGCCTTCTACCACTATAAAGCCCCCATAGCTTAACCCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAAAGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAACCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTGGCCACATGTTATCTGCACCAGCTAAGATTAAAATGCAACCAAGCTGTCATAAGCCTAAGATCCACCTAAACCCAACCCAAATCCATCTTAGCCTCAACGATTAATTTTAACCCACGAAAGCTAGGACCCAAACTGGGATTAGATACCCCACTATGCCTAGCCCTAAATCTAGATACCTCCCATCACACATGTATCCGCCTGAGAACTACGAGCACAAACGCTTAAAACTCTAAGGACTTGGCGGTGCCCCAAACCCACCTAGAGGAGCCTGTTCTATAATCGATAATCCACGATTCACCCAACCACCCCTTGCCAGCACAGCCTACATACCGCCGTCGCCAGCCCACCTCTAATGAAAGAACAACAGTGAGCTCAATAGCCCCTCGCTAATAAGACAGGTCAAGGTATAGCCTATGGGGTGGGAGAAATGGGCTACATTTTCTAACATAGAACAAACGAAAAAGGATGTGAAACCCGCCCTTAGAAGGAGGATTTAGCAGTAAAGTGAGATCATACCCCCTAAGCTCACTTTAAGACGGCTCTGAGGCACGTACATACCGCCCGTCACCCTCTTCACAAGCCATCAACATCAATAAATATATACTTCCCCTCCCGGCTAAAGACGAGGCAAGTCGTAACAAGGTAAGTGTACCGGAAGGTGCACTTAGACTACCAAGGCGTAGCTATAACTTCAAAGCATTCAGCTTACACCTGAAAGATACCCTCAACAGACAAGGTCGCCTTGACTTGCCCCCCCTCTAGCCCGACAAACTCGTACCCTTAACATAAAAAACTTACCTCCCCCTCTTAACCAAAACATTATAAATTGTCCCAGTATAGGCGATAGAAAAGACTACCCCGGCGCAATAGAGGCTAACTGTACCGCAAGGGAAAGATGAAATAGCAATGAAAACCATAAGCAAAAAACAGCAAAGACCAACCCTTGTACCTTTTGCATCATGATTTAGCAAGAACAACCAAGCAAAGTGAGCTAAAGTTTGCCTTCCCGAAACCCAAGCGAGCTACTTGCGAGCAGCTAAAATTTGAGCGAACCCGTCTCTGTTGCAAAAGAGCGGGATGACTTGCCAGTAGAGGTGAAAAGCCTACCGAGCTGGGTGATAGCTGGTTACCTGTCAAACGAATCTAAGTTCCCCCTTAACCCACCCCCTAAAGACACCCACCTTTGTCAACCTTGAGAACGTTGGGGTTAAGAGCAATTCGATGGGGGTACAGCTCCATCGAAAAAGAACACAACCTCCTCCAGCGGATAATAATCACCCCTCCCCGCACTGTGGGCCTTCAAGCAGCCACCAACAAAAGAGTGCGTCAAAGCTCCCTCATTAAAAAATCTAAAACCCTATTTGACTCCCTCAACCAAAGCAGGTTAACCTATGACAATAGAAGAATCAATGCTAAAATGAGTAATCTGGAACCTATCCTCCTACGGCGTAAACTTACATTAATACATTATTAACAGAACTCAACTTATACCCCCACACTAACAAGCAATACGTATTCCTCAATCTGTTAAGCCAACCCAGGAGCGCCCACAGGATGATTAAAACCTACAGAAGGAACTCGGCAAACCAAAGACCCGACTGTTTCCCAAAAACATAGCCTTCAGCTAACAACAAGTATTGAAGGTGATGCCTGCCCAGTGACCCCCAAAGTTCAACGGCCGCGGTATCCTAACCGTGCGAAGGTAGCGCAATCAATTGTCCCGTAAATTGAGACTTGTATGAATGGCTAAACGAGGTCTTAACTGTCTCCTGTAGGTAATCTATGAAATTAGTATTCCCGTGCAAAAACGAGAATGTGAACATAAGACGAGAAGACCCTGTGGAACTTTAAAATCACGACCACCTTACAACCTTACACAGCCCCACTGGGTCCACCCACACATAAACCCCTGGTCGACATTTTTCGGTTGGGGCGACCTTGGAGAAAAAAAAATCCTCCAAACCCACAGACCACAACTCTTCACTAAGACCAACTCCTCAAAGTACCAACAGTAACCAGACCCAATATAATTGAGCAATGGACCAAGCTACCCCAGGGATAACAGCGCAATCTCCTCCAAGAGCCCATATCGACAAGGAGGTTTACGACCTCGATGTTGGATCAGGACAACCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAACAGTCCTACGTGATCTGAGTTCAGACCGGAGCAATCCAGGTCGGTTTCTATCTATGGACACTCCTCCTAGTACGAAAGGACCGGAGAAGTGGGGTCAATACCACTGAGCACACCCCAACCTTCTAAGCAATGAATACAACTCAACTGCCAAGAACCCCTCCCCCACACCCGAACTCCTAGAAAAGGATCCAGCTAGCGTGGCAGAGCTCGGCAAATGCAAAAGGCTTAAGCCCTTTATCCAGAGGTTCAAATCCTCTCCCTAGCTACCCCGGACATGACCCTGCCCACCCTAACAAACCTTCTAATCATAACCTTATCCTATATTCTCCCCATCCTAATCGCCGTGGCCTTCTTAACACTTGTAGAACGAAAAATCCTAAGCTACATGCAGGCCCGAAAGGGCCCAAACATTGTGGGCCCTTTTGGTCTACTCCAACCCGTTGCAGACGGGGTAAAACTATTCATTAAAGAGCCAATCCGACCATCTACCTCCTCCCCCTTCCTCTTCATTATTACTCCAATCCTAGCACTACTCCTAGCCCTGACTATTTGAGTCCCCCTCCCACTACCATTCCCCCTTGCAGACCTCAACCTAGGACTACTATTTCTCCTAGCCATATCAAGCCTAACTGTCTACTCTCTACTCTGATCCGGATGAGCATCAAACTCCAAGTATGCCCTAATCGGAGCCCTTCGAGCCGTCGCACAAACAATCTCATACGAAGTCACCCTAGCCATCATCCTGTTATCCACAATCATACTGAGCGGCAATTACACCTTAAGCACCCTGGCCATCACCCAAGAGCCCATCTACCTCATTTTTTCCGCATGACCCCTCGCAATAATATGATACATCTCTACCCTTGCTGAAACCAACCGCGCCCCATTTGACCTAACAGAAGGAGAGTCAGAGCTAGTCTCAGGATTTAATGTAGAATATGCCGCCGGACCATTCGCCATATTCTTCTTAGCCGAATACGCCAACATTATACTAATAAACACACTAACCACCGTCCTATTCCTGAACCCAAGCTTCCTAAATCTCCCACCAGAATTATTTCCCATTGCACTCGCTACAAAAACCCTCCTCCTTTCATCCTCATTTCTATGAATCCGGGCCTCATATCCACGGTTCCGCTATGACCAACTAATACATCTTCTATGAAAAAACTTCCTCCCCCTAACCCTAGCCTTATGCCTCTGACATACCAGCATACCAATCAGCTACGCCGGCCTCCCCCCAATCTAAGGAAGCGTGCCTGAACAAAAAGGATCACTATGATAAAGTGAACATAGAGGTATAACAACCCTCTCACTTCCTTAATCCTAGAAAAGTAGGAATCGAACCTACACAGAAGAGATCAAAACTCTTCATACTCCCTCTATATTATTTTCTAGTAAGGTCAGCTAACTAAGCTATCGGGCCCATACCCCGAAAATGATGGTTTAACCCCTTCCCCTACTAATGAACCCCCATGCAAAACTAATCTGCACAGTAAGCCTCATCATGGGAACCAGCATCACAATCTCCAGCAACCATTGAATCTTAGCCTGAACAGGCTTAGAGATCAACACCTTAGCCATCATCCCCCTCATCTCCAAGTCACACCACCCCCGAGCGATTGAAGCCACTATCAAATATTTCCTCACCCAATCAACTGCATCAGCCCTAATCCTCTTCTCGAGCATAACCAACGCCTGATCCACCGGACAATGAGACATTACACAACTAAACCACCCGACATCATGCCTAATATTAACAATAGCAATCGCAATCAAATTAGGACTAGTCCCATTCCACTTCTGATTCCCAGAAGTACTCCAAGGCTCCTCCCTAATCACTGCCCTACTACTCTCCACCCTAATAAAACTCCCCCCAATCACACTCCTCCTCCTAACATCACAGTCTCTTAATACCACCTTACTCACCCTCCTAGCAATCTCCTCCACCCTAATCGGAGGCTGAATGGGCCTAAACCAAACACAAACACGAAAAATCCTAGCCTTCTCATCCATCTCCCATTTAGGATGAATAATTATAATTATCTCCTATAACCCACAACTCACTATTCTCACCTTCATCCTCTACACAATTATGACCTCAACTGTATTCCTATCCCTAGCCCAAATCAAAGTCCTAAAACTGTCAACACTACTCATCTCATGAACTAAAACCCCAATACTAAATGCAACTGTAATACTAACCCTCCTCTCCCTAGCTGGCCTCCCACCATTAACCGGCTTCATGCCAAAATGACTCATTATCCAAGAACTAACCAAACAAGAAATAACCCCAATAGCCACAATCATCACAATACTATCACTCCTAAGCCTATTCTTCTACCTCCGACTTGCATACCACTCAACAATCACACTCCCCCCCAACTCATCAAACCACATAAAACTCTGACGAACTAACAAAACCCTAAACACCCCCACCGCCATTCTAACTGCGCTATCAACCACCCTATTGCCCCTTTCCCCCCTAATTATTACCATACTATAGAAACTTAGGATTAACTGTCACCAAACCAAAGGCCTTCAAAGCCTTAAATAAGAGTTAAACTCTCTTAGTTTCTGCCCAACTAAGACCAACAGGACATTAACCTGTATCTCCTGAATGCAAATCAGACGCTTTAATTAAGCTAAGGCCTCTACCTAGACAGATGGGCTTCGATCCCATACAATTTTAGTTAACAGCTAAATGCCAACACCAATTGGCTTCTGCCTACAGACCCCGGCACACTTTAGTGTACATCAACGAGTTTGCAACTCATTATGAACTTCACTACAGAGTCGATAAGAAGAGGAATTGAACCTCTGTAAAAAGGACTACAGCCTAACGCTTCAACACTCAGCCATCTTACCTGTGACCTTCATCAACCGATGATTATTCTCAACCAACCACAAAGACATTGGCACTCTTTACCTAATTTTCGGCACATGGGCGGGCATAGCCGGCACAGCACTTAGCCTTCTAATTCGCGCAGAACTAGGACAGCCCGGAACTCTCTTAGGAGACGATCAAATTTACAATGTAATCGTCACAGCCCATGCTTTCGTCATAATCTTCTTTATAGTTATACCCATCATGATCGGTGGCTTCGGAAACTGACTAGTCCCACTTATAATCGGTGCCCCAGACATAGCATTCCCCCGCATAAATAACATAAGCTTCTGACTCCTCCCTCCCTCCTTCCTTCTCCTACTAGCCTCATCTACCGTAGAAGCTGGGGCCGGCACAGGATGGACAGTTTACCCCCCTTTAGCCGGCAACCTAGCCCACGCTGGCGCATCAGTAGACCTAGCCATCTTTCATTACTTAGCAGGTGTTTCCTCCATTCTAGGAGCCATCAACTTTATCACTACCATCATCAACATAAAACCCCCCGCACTGTCACAATACCAAACACCCCTATTCGTATGATCCGTCCTCATTACTGCCATCCTACTACTCCTCTCCTTACCCGTCCTAGCAGCTGGGATTACCATACTACTTACCGACCGCAACCTTAACACCACATTCTTCGACCCAGCTGGAGGAGGAGACCCAATCCTATACCAACACCTATTCTGATTCTTCGGTCACCCCGAAGTTTACATCCTCATCCTCCCAGGTTTCGGAATAATTTCCCACGTAGTAGCATACTATGCAGGAAAAAAAGAACCATTCGGATACATAGGAATAGTCTGAGCCATACTGTCAATCGGATTCCTTGGCTTCATTGTATGAGCCCACCATATATTCACAGTCCGAATGGACGTAGACACCCGAGCCTACTTTACATCAGCCACAATAATCATCGCCATCCCAACTGGTATTAAAGTCTTCAGCTGACTAGCAACCCTGCACGGAGGAACAATTAAATGAGACCCCCCTATGCTATGAGCCCTAGGATTCATCTTCCTCTTCACTATCGGAGGCCTAACGGGAATCGTCCTTGCTAACTCATCACTAGATATTGCCCTTCATGACACCTACTATGTAGTCGCCCACTTCCACTATGTCCTCTCAATGGGGGCAGTTTTTGCCATTCTAGCAGGATTTACCCACTGATTTCCCCTCTTCACAGGCTTTACCCTACACCCATCATGAACCAAGGCACATTTCGGAGTAATATTTACCGGAGTTAACCTAACCTTTTTCCCCCAACATTTCCTGGGCCTAGCTGGAATACCCCGACGATACTCAGATTACCCAGACGCCTACACACTATGAAACACACTATCCTCAATCGGCTCCTTAATTTCAATAACAGCCGTAATCATACTCATATTCATCGTCTGAGAAGCCTTCTCAGCAAAACGAAAAGTACTCCAACCCGAATTAACTGCCACTAATATCGAATGAATTCATGGCTGCCCACCCCCATACCACACCTTCGAAGAACCAGCCTTTGTACAAGTGCAAGAAAGGAAGGAATCGAACCCTCACATGTTGGTTTCAAGCCAACCGCATCAAACCACTTAATGCTTCTTTCTTATGAGACGTTAGTAAACCAATTACATAGACCTGTCAAGACTAAATCACAGGTGCAAACCCTGTACATCTCATATGGCCAACCACTCCCAACTAGGCTTTCAAGACGCCTCATCCCCCATCATAGAAGAGCTCGTTGAATTCCACGACCACGCCCTGATAGTCGCACTAGCAATTTGCAGCTTAGTACTCTACCTTCTAACTCTTATACTTATAGAAAAACTATCATCAAACACCGTAGATGCCCAAGAAGTTGAACTAATCTGAACCATCCTACCCGCTATTGTCCTAGTCCTGCTTGCCCTCCCCTCCCTCCAAATCCTCTACATAATAGACGAAATCGACGAACCTGATCTCACCCTAAAAGCCATCGGACACCAATGATACTGAACCTATGAATACACAGACTTCAAGGACCTCTCATTTGACTCCTACATAACCCCAACAACAGACCTCCCCCTAGGCCACTTCCGCCTACTAGAAGTCGACCATCGCATTGTAATCCCCATAGAATCCCCCATTCGAGTAATCATCACCGCTGATGACGTCCTCCACTCATGAGCCGTACCCGCCCTCGGGGTAAAAACAGACGCAATCCCTGGACGACTAAATCAAACCTCCTTCATCACCACTCGACCAGGAGTGTTTTACGGACAATGCTCAGAAATCTGCGGAGCTAACCACAGCTACATACCCATTGTAGTAGAGTCTACCCCCCTAAAACACTTTGAAGCCTGATCCTCACTACTGTCATCTTAACCATTAAGAAGCTATGCACCAGCACTAGCCTTTTAAGCTAGAGAGAGGGGACACCCTCCCCCTTAATGACATGCCCCAATTAAACCCAAACCCATGATTCTCCATCATACTCCTAACTTGATTCACCTTCTCTCTGCTTATCCAACCCAAACTTCTTTCATTCACTCTAACAAACAACCCTGCAAACAAAATTACAACAACTAAACCCACCCCCTGAACCTGACCATGAACCTAAGCTTCTTCGACCAATTCTCAAGCCCCTGCCTACTAGGAATCCCTCTAATCCTCCCATCACTCCTTCTTCCAGCCCTCCTACTTCCATCACCAGGAAACCGATGGATCAACAACCGCCTCTCCACCATCCAACTCTGATTCACCCACCTAATCACAAAACAACTAATAACCCCCCTAAACAAGGCAGGTCACAAATGAGCCCTCCTACTCACCTCACTTATCCTAATACTCCTCTCCATTAACCTCCTAGGCCTCCTCCCCTACACCTTCACCCCAACTACCCAACTATCAATAAACATGGCCTTAGCCCTGCCACTATGACTAGCCACCTTACTAACAGGCCTGCGAAACCAACCCTCCGCCTCCTTAGGACACCTACTCCCTGAAGGCACCCCCACCCCACTGATTCCAGCCCTAATCATAATCGAAACAACCAGCCTACTTATTCGGCCATTAGCCCTAGGAGTACGCCTAACAGCAAACCTCACAGCTGGTCACCTACTTATCCAACTTATCTCTACAGCCACAATCGCCCTACTACCAATAATGCCATCAATCTCCGCCCTAACGGCACTCATCCTATTCCTACTAACCATCCTAGAAGTGGCAGTAGCAATAATCCAAGCCTACGTCTTCGTCCTCCTCCTAAGCCTCTACTTACAAGAAAATATTTAATGGCACACCAAGCACACTCCTACCACATAGTTGACCCAAGCCCATGACCAATCTTCGGCGCAGCCGCAGCACTACTAACCACCTCTGGCCTAATCATATGGTTCCACTACAGCTCGACCACCCTACTGACAATAGGCCTCCTCTCTATACTTCTAGTCATGCTGCAATGATGACGAGACGTAGTCCGAGAAAGCACCTTCCAGGGCCACCACACCCCAACTGTCCAAAAGGGCCTACGATACGGAATAATCCTTTTCATTACATCAGAGGCCTTCTTCTTCCTAGGATTCTTCTGAGCCTTCTTCCACTCAAGCCTAGCCCCAACACCAGAACTGGGGGGCCAATGGCCCCCAACAGGAGTCAAACCCCTAAACCCCCTTGAAGTACCCCTACTAAATACAGCAATCCTCCTAGCCTCAGGAGTCACCGTTACATGGGCTCACCACAGCATCACAGAAGGAAACCGAAAACAAGCCATCCACGCACTAACTCTCACAATCCTCCTAGGATTCTATTTCACAGCCCTACAAGCAATAGAGTACCATGAAGCCTCCTTCTCAATCGCTGACAGCGTCTACGGCTCCACCTTCTTCGTCGCTACAGGGTTCCACGGACTACATGTAATCATTGGATCATCCTTTTTAACAGTTTGCCTCCTACGACTAATCAAATTCCACTTCACACCAAACCACCACTTCGGATTTGAAGCAGCAGCCTGATACTGACACTTCGTAGACATCATCTGACTCTTCCTCTACATATCCATATACTGATGAGGATCTTGCTCTTCTAGTATACTCATTACAACTGACTTCCAATCTTTAAAATCTGGTATCAACCCAGAGAAGAGCAATGAACACACTTACATTTATACTCTCACTATCCTTTCTACTAAGCGCTGCACTAACTACTATAAACTTTTGACTAGCCCAAATAGCCCCAGACACAGAAAAACTGTCACCGTACGAATGCGGATTTGACCCACTAGGATCAGCCCGACTCCCATTCTCAATCCGATTCTTCCTAGTAGCCATCCTATTCCTTTTATTCGACCTAGAAATCGCCCTGCTTCTTCCCCTTCCATGAGCCATCCAACTTGCACACCCTATAATAACCCTTACTTGAGCCACCACTATCATCGCCCTCCTCACATTTGGTCTCATCTACGAATGAACTCAGGGCGGCTTAGAATGAGCAGAATAACAGAAAGTTAGTCTAACTAAGACAGCTGGTTTCGACCCAGCAAATTATAGACCCACCTATAACTTTCTTATGTCTCCCCTACACTTCAGCTTCTATTCTGCATTCACATTCAGCAGCCTAGGACTAGCATTCCACCGAACACACCTCATCTCTGCCCTACTATGCCTAGAGAGCATAATACTATCCATATTCATCCCCCTCTCAATCTGACCAGTAGAAAACCAAACCCCATCATTCGCCCTTGTACCTATCCTAATACTAGCCTTCTCAGCATGCGAAGCTGGCACAGGCCTAGCCATACTAGTAGCTTCTGCACGAACACATGGCTCTGACCACCTACACAACCTAAACCTTCTACAATGCTAAAGATCATCCTACCAACAATCATACTCTTGCCCACAGCCCTCTTATCCCCAGCAAAATCCATATGAACTAACACCACAATATACAGCCTTCTAATCGCCTCGATCAGCCTACACTGACTAACCCCATCATACTACCCCACAAAAACCCTAACCCTCTGAACAGGCATAGACCAAATCTCAACTCCCCTCTTAGTACTCTCCTGCTGGTTTCTCCCCCTCATAATTATAGCTAGCCAAGGCCACCTACAACATGAACCCCACAAACGAAAACGAATATTCATCTCCACCTTAATCATCATCCAACCATTCATCATCCTAGCCTTCTCAGCAACTGAACTCATACTATTCTACATCTCATTCGAAGCAACCCTAATCCCAACCCTCATCTTAATCACACGCTGAGGAAACCAACCAGAACGACTTAGCGCAGGCATTTACCTTCTATTCTATACCCTAATTAGCTCTCTTCCCCTACTAGTCTCCATCCTCTACCTTCACACAAATACTGGAACCCTCCACCTACCCATTATCAAACTCACCCACCCCAACCTACCTGCCTCCTGAACAAGCTTATTATCTAGCCTAGCTCTCCTAATAGCCTTTATAGTCAAAGCACCCCTATACGGACTACACCTATGACTGCCTAAAGCCCATGTAGAAGCACCAATCGCAGGCTCCATACTACTCGCTGCTCTACTACTAAAACTAGGCGGATATGGCATCATACGAGTCACCCTCCTAATGGAGCCCGTATCCAACTTCTTACACTACCCCTTCCTCACCCTAGCCCTATGAGGTGCCCTAATAACTAGCTCTATCTGCTTACGCCAAACAGACCTAAAATCCCTCATTGCCTACTCATCCGTAAGCCATATGGGCCTAGTCATCGCTGCAAGTATAATCCAAACCCAATGATCATTCTCAGGTGCAATAATCCTCATAATCTCCCATGGACTAACCTCTTCCCTTTTATTCTGCCTAGCAAACACAAACTACGAACGGACACACAGCCGCATTCTTATCCTGACACGAGGCCTCCAACCCCTCCTACCATTGATATCAGTATGATGATTACTAGCCAACTTAACCAACATGGCCCTGCCCCCAACCACCAACCTGATAGCAGAACTAACAATTATAGTTGCCCTCTTCAACTGATCCTCCCCCACAATTATCTTAACCGGCACTGCAACACTCCTAACCGCCTCTTACACCCTCTACATACTACTCTCAACCCAACGAGGCACTCTTCCATCCCACATCACAACAACCCCCAACTCAAACACTCGAGAACATCTTCTCATAACCCTCCACATCATCCCCATACTAACACTCATCCTCAAACCAGAACTAATCTCAGGAACCCCTCTATGCAAACATAGTTTAACCCAAACATTAGATTGTGATTCTAAAAATAGGAGTTTAACCCTCCTTGTTCGCCGAGGGGAGGCCCAAGCCAGCAAGAACTGCTAATTCCTGCATCTGAGCTTTAAACCTCAGTCCCCTTAACTTTTAAAGGATAAGAGCAATCCGTTGGTCTTAGGAACCACCTATCTTGGTGCAAATCCAAGTAAAAGTAATGGAGACTCCACTGCTCCTTAACACCCTCACAACATTAACACTACTCACCCTCCTTACCCCTATTATCCTTCCCCCCCTCCTAAATCTAAAAAACTCCCCCATATCCATCACCAAAACCATTAAAACCGCCTTCCTAATCAGCCTAATCCCAACAACAATCTTCATCCACTCAGGGGCAGAAAGCATTGCCACCCACTGAGAATGACAATTTATCCCCAACTTCAAGATCCCCATCTCCCTAAAAATAGACATATACTCCATAATATTCTTCCCCATTGCACTATTTGTAACCTGATCCATCTTAGAGTTCGCAACATGATACATAGCATCCGAACCATTTATTACAAAATTCTTTACCTACCTACTCACCTTCCTCATCGCCATATTAACACTAACCATCGCAAATAACATATTCCTCCTATTTGTAGGATGAGAAGGAGTAGGAATCATGTCATTCCTTCTCATTGGATGATGACAAGGACGAGCTGAAGCCAACACAGCTGCACTACAGGCAATAATCTACAACCGAATCGGAGACATTGGCCTCATCCTAAGCATAGCATGACTAGCCTCTTCCCTAAACACCTGAGAAATTCAACAAATCACCCACCCAAACCAAACACCCACCCTCCCCCTCCTTGGCCTAATCCTAGCCGCCACAGGAAAATCCGCTCAATTTGGCCTTCACCCATGACTTCCAGCAGCAATAGAAGGCCCAACCCCTGTCTCCGCCCTACTCCATTCCAGCACAATAGTAGTTGCTGGAATTTTTTTACTCATCCGCACCCACCCCTTCCTGTCATCCAATAAAACAGCCCTGACAACGTGCCTATGCTTAGGTGCTCTATCAACACTCTTTGCCGCAACATGCGCTCTCACTCAAAACGACATCAAAAAAATCATTGCCTTCTCCACTTCAAGCCAACTAGGCCTCATAATAGTCACAATTGGCCTAGACCTCCCCCAACTAGCCTTCCTCCACATCTCAACCCATGCCTTCTTTAAAGCTATATTATTCCTATGCTCCGGCCTAATTATCCACAGCCTCAATGGAGAACAAGACATCCGCAAAATAGGATGTCTACAAAAAACCCTCCCAATAACCACCTCCTGCCTAACCATTGGCAACCTCGCTCTAATAGGAACTCCATTCCTAGCAGGCTTCTACTCAAAAGACCTGATCATCGAAAACCTAAACACCTCATACATCAATACCTGAGCCCTCTCACTTACACTACTTGCCACATCTTTCACTGCAACCTACAGCCTCCGCATAACCTTACTAGTCCAAACAGGACACACACGAACCCCCAGCAATCACCCCATTAACGAAAACACCCCCCCAGCCATTCTCCCAATCATACGACTAGCCCTTGGCAGCATTATAGCAGGCCTATTAATCTCATCCCTAATCCTCCCCCCTAAAACCCCTCCAATAACTATACCCACCATCACAAAAACTGCTGCCATCATTGTTACAACCCTAGGAATTATCCTAGCCCTAGAACTCTCAAGCCTATCATACTCCCTCACTCCCCCAAAACACAATCCCCTCATAAACTTCTCCTCCTCCCTAGGCTACTTTAACCCCCTAACTCACCGAATTAGCCCCTCAATCCTCCTACATACCGGACAAAAAATTGCATCCCACTTAATCGACATAGCATGGTACAAAAAAATAGGCCCCGAAGGCCTTGCCAACCTTCATCTCACCATAACCAAAATCTCAACCACACTCCACACAGGCCTAATTAAATCTTACCTGGGTTCCTTCGCCCTCACAATCCTTACAACGATCCTACTTATCCAAAAATAAACTAATGGCACCCAACATTCGAAAATCCCACCCCCTACTAAAAATAATTAACAACTCCCTAATCGACCTCCCAGCCCCATCCAACATCTCTGCTTGATGAAATTTCGGCTCCCTATTAGCAGTCTGCCTCATGACCCAAATCCTCACCGGCCTACTACTAGCCATGCACTACACAGCAGACACATCCCTAGCCTTCTCCTCCGTAGCCCACACTTGCCGGAACGTACAATACGGCTGACTCATCCGGAATCTCCACGCAAACGGCGCCTCATTCTTCTTCATCTGTATCTTCCTTCACATCGGACGAGGCCTATACTACGGCTCCTACCTCTACAAGGAAACCTGAAACACAGGAGTAATCCTCCTCCTCACACTCATAGCCACCGCCTTTGTGGGCTATGTTCTCCCATGGGGCCAAATATCATTCTGAGGGGCCACCGTTATCACAAACCTATTCTCAGCAATTCCCTACATTGGACACACCCTAGTAGAGTGAGCCTGAGGGGGATTTTCAGTCGACAACCCAACCCTTACCCGATTCTTCGCTTTACACTTCCTCCTCCCCTTTGCAATCGCAGGTATTACTATCATCCACCTCACCTTCCTACACGAATCAGGCTCAAACAACCCCCTAGGCATCTCATCCGACTCTGACAAAATTCCATTTCACCCATACTACTCCTTCAAAGACATTCTGGGCTTAACTCTCATACTCACCCCATTCCTAACACTAGCCCTATTCTCCCCCAACCTCCTAGGAGACCCAGAAAACTTCACCCCAGCAAACCCACTAGTAACCCCCCCACATATCAAACCAGAATGATATTTTCTATTCGCCTATGCCATCCTACGCTCCATCCCCAACAAACTTGGAGGTGTACTAGCCCTAGCAGCCTCAGTCCTCATCCTCTTCCTAATCCCCTTCCTCCACAAATCTAAACAACGAACAATAACCTTCCGACCACTCTCCCAAACCCTATTCTGACTTCTAGTAGCCAACCTTCTTATCCTAACCTGAATCGGAAGCCAACCAGTAGAACACCCCTTCATCATCATTGGCCAAATAGCATCCCTCTCTTACTTCACCATCCTACTTATCCTCTTCCCCACAATCGGAACACTAGAAAACAAAATACTCAACTACTAAAATACTCTAATAGTTTATGAAAAACATTGGTCTTGTAAACCAAAAACTGAAGACTCCACCCTTCTTAGAGTATCAGAAAAGGAGGGCTCAAACCTCCATCTCCAGCTCCCAAAGCTGGTATTTTCAAATAAACTACTCTCTGAAACCCTTAAACCGCCCGAATTGCCCCCCGAGACAACCCACGCACAAGCTCTAGTACAACAAACAAAGCTAACAACAAACCTCACCCAGCCACCAAAAACAACCCAACCCCACATGAATAAAACACCGCAACTCCACTAAAATCCAACCGAGCAAAAGACACACCCCCGCCATCAACAGTAACCACCCCCACCTTTCAAAAATCAACGAGCCCTCCCAGAACCACCCCCATTCAAACCACCAAGACAAAACCTAGCCCATACCCCACCACCCGCCAATCCCCCCAAGCCTCAGGATAAGGATCCGCAGCTAATGACACAGAATAAACAAAAACCACCAACATCCCCCCTAAATACACCAAAAATAACGCCAAGGAAACAAAAGAAACACCCAAACTCACTAACCACCCACATCCTATCACAGACGCTACCACCAACCCCACCACCCCATAATACGGCGAAGGATTAGACGCCACAGCTAAAACCCCCAGCATAAAACAAATCCCAAGAAAAATCACAAAATAAGTCATATTATTCCCGCTTGGTTAGACCCCAAGGACTACGGCTTGAAAAGCCATTGTTGTTCTCAACTACGGGAAC >chr32 CATCTAAACCAACACCTAATCCTAAACCTAAGGCCTTCCGGAATCCTAAACCTAAGCCAACAGctaaccctaacccatcccctaacccaatccatagccctaagcttaagcctaaccctaagccaaaccctagccctaaccatagccccaactccagcactaaccgtaatggtaaacttaatgataatcctaaccctaacacaaaccctTCTTTCCGGAGCTGGGGAAACCGACTCCAGAAATGCCATCTGAGGGAACAGACGTCCTGGCAGATAGAACAAACCAGGTGTGAGCACTGTCTTTCCAAAGTTACACCGAAGCCGTTGGAGGACAGGTCGGACCTCAGGCCTTCCCGCGGCACCAACTACTGTCGGCGGATTTGCGCATAGATCCTTCACAGCTGTTTCAAAGAACCATTCTGTGATTCTATGATCTTCCAGGACCCTTCCAAGCCACACCATCCTGTGGTTCTatcatcttccaggactcttgcaacacaaaccattctatggttctgtgatCACTAAGGAACCTCCCAAGCCACGCCGTCCTGCAGTTCTGtgatcttccaggacccttccaacacggaccatcctatggttctatgatCTTCCAGGACCCTCCTGTGCGGGTGATGTCACCATGACGTGATGACCTCACAGATGCCCTGGGGTGGGGCAGGGGCAGTGGGTCAGCGCGGAACCTGCTGGCCCCATTCTGCGGGTGGTGCTGGTCCAGCGAGGAGCTGTGCGAGTGGTGCAGTAATGCGGGCCCAGTGTGTCAGCAGAAGATTAAGGGCGGTGTGGCGTGCGAAGCTGGTGGAGGAGGAGCTGCTGGTGAGCTCTGGGTGCACAGACACAGAAGGGCCGGCGGGGGGAGCTGCCGGCTGGAGGCAGCAGAGGGCCGGGCACCTCCGGTGGGATGCAGAGCTGCCGGCAGCACCTCGGTGCCAACGCTGCTCCTCTCCCTTCACACAGGCTCATGCGGCCGTGGAGAAGTGCAAGGCCGTGGCCAGGGAATCCTTGATG TEST lastal -fTAB -i1 -w0 -e40 /tmp/last-test galGal3-M-32.fa # # a=7 b=1 A=7 B=1 e=40 d=-1 x=39 y=9 z=39 D=1e+06 E=1.13155e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=0 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks # batch 0 16775 chrM 0 16775 + 16775 chrM 0 16775 + 16775 16775 EG2=0 E=0 43 chrM 246 65 + 16775 chrM 307 65 + 16775 65 EG2=0.0011 E=6.8e-13 43 chrM 307 65 + 16775 chrM 246 65 + 16775 65 EG2=0.0011 E=6.8e-13 # batch 1 1028 chr32 0 1028 + 1028 chr32 0 1028 + 1028 1028 EG2=0 E=0 76 chr32 412 166 + 1028 chr32 456 166 + 1028 166 EG2=2.2e-19 E=6.9e-30 76 chr32 456 166 + 1028 chr32 412 166 + 1028 166 EG2=2.2e-19 E=6.9e-30 73 chr32 411 125 + 1028 chr32 499 125 + 1028 125 EG2=6e-18 E=1.9e-28 73 chr32 499 125 + 1028 chr32 411 125 + 1028 125 EG2=6e-18 E=1.9e-28 51 chr32 413 77 + 1028 chr32 545 77 + 1028 77 EG2=1.8e-07 E=5.8e-18 51 chr32 545 77 + 1028 chr32 413 77 + 1028 77 EG2=1.8e-07 E=5.8e-18 44 chr32 3 158 + 1028 chr32 51 158 + 1028 158 EG2=0.00038 E=1.3e-14 44 chr32 51 158 + 1028 chr32 3 158 + 1028 158 EG2=0.00038 E=1.3e-14 42 chr32 3 138 + 1028 chr32 69 138 + 1028 138 EG2=0.0034 E=1.1e-13 42 chr32 69 138 + 1028 chr32 3 138 + 1028 138 EG2=0.0034 E=1.1e-13 # Query sequences=2 normal letters=17803 TEST lastal -j0 -i1 -s0 /tmp/last-test galGal3-M-32.fa # # a=7 b=1 A=7 B=1 e=-1 d=-1 x=0 y=0 z=0 D=1e+06 # R=10 u=0 s=0 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=-1 j=0 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # # length count # # batch 0 chrM 1 69355802 2 16559069 3 3950375 4 967050 5 235782 6 57598 7 14409 8 3694 9 925 10 245 11 68 12 18 13 6 14 1 # batch 1 chr32 1 4452070 2 1120721 3 278213 4 70148 5 17672 6 4411 7 1073 8 267 9 57 10 12 11 2 12 1 # Query sequences=2 normal letters=17803 TEST lastal -Q1 -e90 -a9 /tmp/last-test SRR001981-1k.fastq # # a=9 b=9 A=9 B=9 e=90 d=-1 x=89 y=44 z=89 D=1e+06 E=2.38195e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=3 Q=1 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=0.22361 K=0.374766 # # A C G T M S K W R Y B D H V # A 6 -18 -18 -18 3 -18 -18 3 3 -18 -18 1 1 1 # C -18 6 -18 -18 3 3 -18 -18 -18 3 1 -18 1 1 # G -18 -18 6 -18 -18 3 3 -18 3 -18 1 1 -18 1 # T -18 -18 -18 6 -18 -18 3 3 -18 3 1 1 1 -18 # M 3 3 -18 -18 3 0 -18 0 0 0 -2 -2 1 1 # S -18 3 3 -18 0 3 0 -18 0 0 1 -2 -2 1 # K -18 -18 3 3 -18 0 3 0 0 0 1 1 -2 -2 # W 3 -18 -18 3 0 -18 0 3 0 0 -2 1 1 -2 # R 3 -18 3 -18 0 0 0 0 3 -18 -2 1 -2 1 # Y -18 3 -18 3 0 0 0 0 -18 3 1 -2 1 -2 # B -18 1 1 1 -2 1 1 -2 -2 1 1 -1 -1 -1 # D 1 -18 1 1 -2 -2 1 1 1 -2 -1 1 -1 -1 # H 1 1 -18 1 1 -2 -2 1 -2 1 -1 -1 1 -1 # V 1 1 1 -18 1 1 -2 -2 1 -2 -1 -1 -1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # # batch 0 a score=91 EG2=5.5e+08 E=0.00037 s chrM 963 25 + 16775 ttttttaattttttttttatttttt s SRR001981.67 6 24 + 36 TTTTTTGGTTTTTTTTTT-TTTTTT q SRR001981.67 III-IG2*&-+IIIIIIF-7III=I a score=102 EG2=4.7e+07 E=2.8e-05 s chrM 973 17 + 16775 ttttttttattttttAA s SRR001981.107 7 17 + 36 TTTTTTTTATTTTTTAA q SRR001981.107 IIIIIIIIGIIIIII:I a score=91 EG2=5.5e+08 E=0.00037 s chrM 957 29 + 16775 ttgttat-ttttta--attttttttttatttt s SRR001981.202 0 31 - 36 TTGTTGTTTTTTTAACATTTTTTTTTT-TTTT q SRR001981.202 I),I2*8&IIIII3II@IIIIIIIIII-IIII a score=119 EG2=1e+06 E=5e-07 s chrM 952 33 + 16775 tttctttgttattttttaattttttttttattt s SRR001981.279 0 33 - 36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTT q SRR001981.279 5(&%5.&%*$&-,7)+,*)-***2$I25D$37$ a score=104 EG2=3e+07 E=1.7e-05 s chrM 949 33 + 16775 ttttttctttgttattttttaatttttttttta s SRR001981.279 1 33 - 36 TTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTA q SRR001981.279 (&%5.&%*$&-,7)+,*)-***2$I25D$37$I a score=99 EG2=9.1e+07 E=5.6e-05 s chrM 960 28 + 16775 ttattttttaattttttttttatttttt s SRR001981.279 0 28 - 36 TTTTTTTGTTTTTTTTTTTTTTTTGTTT q SRR001981.279 5(&%5.&%*$&-,7)+,*)-***2$I25 a score=96 EG2=1.8e+08 E=0.00011 s chrM 963 24 + 16775 ttttttaattttttttttattttt s SRR001981.279 0 24 - 36 TTTTTTTGTTTTTTTTTTTTTTTT q SRR001981.279 5(&%5.&%*$&-,7)+,*)-***2 a score=95 EG2=2.2e+08 E=0.00014 s chrM 960 28 + 16775 ttattttttaattttttttttatttttt s SRR001981.279 5 26 - 36 TTGTTTTTT--TTTTTTTTTTGTTTTTT q SRR001981.279 .&%*$&-,7--)+,*)-***2$I25D$3 a score=91 EG2=5.5e+08 E=0.00037 s chrM 949 32 + 16775 ttttttctttgttattttttaatttttttttt s SRR001981.279 0 32 - 36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTT q SRR001981.279 5(&%5.&%*$&-,7)+,*)-***2$I25D$37 a score=90 EG2=6.8e+08 E=0.00046 s chrM 956 35 + 16775 tttgttattttttaattttttttttattttttAAA s SRR001981.279 0 35 - 36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTAA q SRR001981.279 5(&%5.&%*$&-,7)+,*)-***2$I25D$37$II a score=102 EG2=4.7e+07 E=2.8e-05 s chrM 968 17 + 16775 taattttttttttattt s SRR001981.346 1 17 - 36 TAATTTTTTTTTTATTT q SRR001981.346 BIIAIIEIIIIIIIIFI a score=90 EG2=6.8e+08 E=0.00046 s chrM 971 15 + 16775 ttttttttttatttt s SRR001981.805 21 15 + 36 TTTTTTTTTTATTTT q SRR001981.805 IIIIIIIIII;I0II a score=91 EG2=5.5e+08 E=0.00037 s chrM 959 27 + 16775 gttattttttaattttttttttatttt s SRR001981.815 1 25 - 36 GTTTTTGTTT--TTTTTTTTTTATTTT q SRR001981.815 23+)03/+==TXBSVSDAFF`hhDNF a score=97 EG2=1e+08 E=6.9e-05 s chrM 960 28 + 16775 ttattttttaattttttttttatttttt s 2 3 28 - 36 TTTATTTTTTGCTTTTTTTTTTTTTTTT q 2 K?B?BBEJFA>==TXBSVSDAFF`hhDN a score=93 EG2=2.6e+08 E=0.00018 s chrM 948 31 + 16775 Attttttctttgttattttttaatttttttt s 2 1 31 - 36 ATTTTATTTTTTGCTTTTTTTTTTTTTTTTT q 2 @JK?B?BBEJFA>==TXBSVSDAFF`hhDNF a score=92 EG2=3.2e+08 E=0.00023 s chrM 958 30 + 16775 tgttattttttaattttttttttatttttt s 2 0 30 - 36 TATTTTATTTTTTGCTTTTTTTTTTTTTTT q 2 C@JK?B?BBEJFA>==TXBSVSDAFF`hhD a score=126 EG2=1.4e+05 E=6.6e-08 s chrM 2016 26 + 16775 GGTGGG-AGAAATGGGCTACATTTTCT s 36 0 27 + 36 GGTGGGAAGAAATGGGCTACATTTTCT q 36 hhhhhhhhhhhhhhhhhhhhhhhhhhh # Query sequences=100 normal letters=3600 TEST lastal -Q1 -j6 -e90 -a9 /tmp/last-test SRR001981-1k.fastq # # a=9 b=9 A=9 B=9 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.38195e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.36661 g=1 j=6 Q=1 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=0.22361 K=0.374766 # # A C G T M S K W R Y B D H V # A 6 -18 -18 -18 3 -18 -18 3 3 -18 -18 1 1 1 # C -18 6 -18 -18 3 3 -18 -18 -18 3 1 -18 1 1 # G -18 -18 6 -18 -18 3 3 -18 3 -18 1 1 -18 1 # T -18 -18 -18 6 -18 -18 3 3 -18 3 1 1 1 -18 # M 3 3 -18 -18 3 0 -18 0 0 0 -2 -2 1 1 # S -18 3 3 -18 0 3 0 -18 0 0 1 -2 -2 1 # K -18 -18 3 3 -18 0 3 0 0 0 1 1 -2 -2 # W 3 -18 -18 3 0 -18 0 3 0 0 -2 1 1 -2 # R 3 -18 3 -18 0 0 0 0 3 -18 -2 1 -2 1 # Y -18 3 -18 3 0 0 0 0 -18 3 1 -2 1 -2 # B -18 1 1 1 -2 1 1 -2 -2 1 1 -1 -1 -1 # D 1 -18 1 1 -2 -2 1 1 1 -2 -1 1 -1 -1 # H 1 1 -18 1 1 -2 -2 1 -2 1 -1 -1 1 -1 # V 1 1 1 -18 1 1 -2 -2 1 -2 -1 -1 -1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=91 EG2=5.5e+08 E=0.00037 fullScore=97.4 s chrM 963 25 + 16775 ttttttaattttttttttatttttt s SRR001981.67 6 24 + 36 TTTTTTGGTTTTTTTTTT-TTTTTT q SRR001981.67 III-IG2*&-+IIIIIIF-7III=I p &*,-..-/~~~~~~~~~~&%%%%%# a score=102 EG2=4.7e+07 E=2.8e-05 fullScore=109 s chrM 973 19 + 16775 ttttttttattttttAA-AA s SRR001981.107 7 20 + 36 TTTTTTTTATTTTTTAATAA q SRR001981.107 IIIIIIIIGIIIIII:IIII p ~~~~~~~~~~~~~~~~~%$# a score=91 EG2=5.5e+08 E=0.00037 fullScore=106 s chrM 957 29 + 16775 ttgttattt-ttta--attttttttttatttt s SRR001981.202 0 31 - 36 TTGTTGTTTTTTTAACATTTTTTTTTT-TTTT q SRR001981.202 I),I2*8&IIIII3II@IIIIIIIIII-IIII p $&((((&$#!$%&&'6~~~~~~~~~~~'%%%$ a score=119 EG2=1e+06 E=5e-07 fullScore=127 s chrM 952 33 + 16775 tttctttgttattttttaattttttttttattt s SRR001981.279 0 33 - 36 TTTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTT q SRR001981.279 5(&%5.&%*$&-,7)+,*)-***2$I25D$37$ p %(*,~~~~~~--,++*)$$$$$$$$$$$$###" a score=104 EG2=3e+07 E=1.7e-05 fullScore=109 s chrM 949 33 + 16775 ttttttctttgttattttttaatttttttttta s SRR001981.279 1 33 - 36 TTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTA q SRR001981.279 (&%5.&%*$&-,7)+,*)-***2$I25D$37$I p #%&'''((((()))*******+./~~~~~~~~~ a score=99 EG2=9.1e+07 E=5.6e-05 fullScore=105 s chrM 960 28 + 16775 ttattttttaattttttttttatttttt s SRR001981.279 0 28 - 36 TTTTTTTGTTTTTTTTTTTTTTTTGTTT q SRR001981.279 5(&%5.&%*$&-,7)+,*)-***2$I25 p $%&()***,-0~~~~~~~~~~+))&&%$ a score=96 EG2=1.8e+08 E=0.00011 fullScore=103 s chrM 963 24 + 16775 ttttttaattttttttttattttt s SRR001981.279 0 24 - 36 TTTTTTTGTTTTTTTTTTTTTTTT q SRR001981.279 5(&%5.&%*$&-,7)+,*)-***2 p %()*+,,/~~~~~~~~~~(''&&$ a score=95 EG2=2.2e+08 E=0.00014 fullScore=111 s chrM 957 31 + 16775 ttgt-tattttttaattttttttttatttttt s SRR001981.279 1 30 - 36 TTTTTTGTTTTTT--TTTTTTTTTTGTTTTTT q SRR001981.279 (&%5.&%*$&-,7--)+,*)-***2$I25D$3 p ####!#$%%%%%&((~~~~~~~~~~7,)'&$# a score=90 EG2=6.8e+08 E=0.00046 fullScore=104 s chrM 957 34 + 16775 ttgt-tattttttaattttttttttattttttAAA s SRR001981.279 1 34 - 36 TTTTTTGTTTTTT-TTTTTTTTTTGTTTTTTTTAA q SRR001981.279 (&%5.&%*$&-,7-)+,*)-***2$I25D$37$II p """"!"#######$#~~~~~~~~~&$%%%%%%%$# a score=102 EG2=4.7e+07 E=2.8e-05 fullScore=108 s chrM 968 19 + 16775 taattttttttttattt-tt s SRR001981.346 1 20 - 36 TAATTTTTTTTTTATTTATT q SRR001981.346 BIIAIIEIIIIIIIIFIIII p ~~~~~~~~~~~~~~~~~%## a score=90 EG2=6.8e+08 E=0.00046 fullScore=90.6 s chrM 971 15 + 16775 ttttttttttatttt s SRR001981.805 21 15 + 36 TTTTTTTTTTATTTT q SRR001981.805 IIIIIIIIII;I0II p ~~~~~~~~~~~~~~~ a score=91 EG2=5.5e+08 E=0.00037 fullScore=97.7 s chrM 960 26 + 16775 ttattttttaattttttttttatttt s SRR001981.815 2 24 - 36 TTTTTGTTT--TTTTTTTTTTATTTT q SRR001981.815 3+)03/+R+,8SU`PH)IBE:I-N~sNFF(RW}DrJ;a'~i< s S1_55 276 241 - 578 TGCGATGTTGACACGTCTTATCCTTCAATGTCGGATGCGACGCTGCCGCGTCT-ATCCGACC-ACGGTTGGCACGCATCCGGCAATGTTGTAAGGCTACA-CCCTAACGCATATTTCAGCGCCTGACGTTTCAACACGCCAGCACGCTCTGCCCGCCATTAACCCGAGATTACGCACAAAACGCAGCGGCGGCAGATTATTACTGAATCCGGCATAAAACAGATCCATACCAC-TTGCATAATGA q S1_55 0+>@7>@AJX??)L5*>&)+ME:A9;:.&>&?=-%HAR'5)Z1-7;&8(6B,1-M59B(,8%-'LW5/D:F0)G8I,M8AK*,(TO+24702:%<>3'39-7RA4MA44%4D(3-K=BF&0I/>GFB9CB4A(/..:A!@+/<3>;';9,@B&;):0%3'?+A'=6.%CN*%9/11()EM*4>>9(-.8.8F>1DFD7H%4)?7,55*Q>/='D719.L<@,&B72-&(B1+J-1&'=M)8F;-? a score=212 EG2=3.7e-88 E=1.1e-106 s S1_55 61 241 + 578 TCATTATGCAA-GTGGTATGGATCTGTTTTATGCCGGATTCAGTAATAATCTGCCGCCGCTGCGTTTTGTGCGTAATCTCGGGTTAATGGCGGGCAGAGCGTGCTGGCGTGTTGAAACGTCAGGCGCTGAAATATGCGTTAGGG-TGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGT-GGTCGGAT-AGACGCGGCAGCGTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCA q S1_55 ?-;F8)M='&1-J+1B(&-27B&,@Q*55,7?)4%H7DFD1>F8.8.-(9>>4*ME)(11/9%*NC%.6='A+?'3%0:);&B@,9;';>3/I0&FB=K-3(D4%44AM4AR7-93'3><%:20742+OT(,*KA8M,I8G)0F:D/5WL'-%8,(B95M-1,B6(8&;7-1Z)5'RAH%-=?&>&.:;9A:EM+)&>*5L)??XJA@>7@>+0 s S1_100 0 239 - 239 TCATTATGCAAAGTGGT-TGGATCTGTTTTATGCCGGATTCA-TAATAATCTGCCGCCGCTGCGTTTTGTGCGTAATCTCGGGTTAATGGCGG-CAGAGCGTGCTGGCGTGTT-AAACGTCAGGCGCTGAAAT-TGCGTTAGGGTTGTAGCCTTACAACATTGCCGGATGCGTGCCAACCGTAGGTCGGATAAGACGCGGCAG-GTCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCA q S1_100 ~;N-B*xC?h_I~O4MIaS<9C/-@wSQk6F[^$9S~f4i87PTP6E~tY~~FqlP~~t[L~SA~~J~~.LS~^OPT9~~]s~gLTf~*=;M{>U_~b@jPTl~a~~zogk~=2JR;u~n~Yi~~c_Z`~^k~~v~P~~d~:~Xsx~S}~ppI>O~Ur~{\L~~~]b~P@\~~~Vjo;lS|Crs~~XPICyV:tR~~c~~k~~b~~~S~RhT[~~Vw~To~~~~W~s/Vf~oQy~Gaf^~}vS~gC~~~Cdv';h<~@?LZ~~nRhew~~v`Px~}~~[n}o~fuPkjWse_L~~ad~~I~OZ~~=br~m~ZBw~h~X~~|QWvL~2`~~YQ~b~zgJ1F~~do[~~L?q?~~IH~~K~`~R`rb]1~j7.~~RY>RF.X~~~V)~~~~~~ @S1_2 TTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCGTGTCGGTTTGGGGTACGATTTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTCAGCACCGTAGTGCCTCGTCATACGCCTCAGCCTTGATTTGCCGGATTTGCCTGGAAAACCAGCCTACACGCTTAAACCGGGACAACCGTCGCCCGGCCAACATAGCCTTCTCCGTCCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGACAGGAACCCTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCGCATTCGCACTTCTGGATACCTCCAGCA + X0CXP4b:3COT6P9TU,G&)3AG=P:>>>`<*FQP7D/AD44D5Z>>k;?=S6;4vaYKLM4Ug*e@EBc.JTR*30ACa~QAtM=(?D?B9F<6wHyE/:~O0R3H:G06g:Ja=><0YMF2J9LIY)Ew?Q-AA7HZ~HDRLBHBF~MLAG-kFH>2=GXMOgE7DD0W3%'7BIK?~@BA>EP;E2A8/\]?0M?42?cuW.L/DY591@@*8?g3PM~~~htF[Y~Bd~~\U>[sSm~~JN`VT~F~~~lUN~_lP^`y~J~~'~ZSOANH<^aY4Y~~1l1~cLWbZf~R``~`V=bUJ_`P~~X~~Xm~s[|~j~~~O~~^~p~;wMY~pi~Y?@~~KMy~WC[~~Y`~~~N~ @S1_4 GGTTGCTGAAACAGGAAGTTTTTCAAAAGGCGGCAGAACCGATTATGTAAACCACGGCGACGATCAGTTATCGCATTAAACTTCTGGAAGAGAATACCGGAGTAGCGCTGTTTTTCCGACGACTCGCAGCGTGACGTTGACAGCGGCGGCGAGCATTCTACTTTCCCGGCCAGAGACTGCTGAGCTGGCTGGAAAGTTGCCAAGCGAGCTGGCAACAGGTGAATGATGGCGTGGAACGCCAGGTGAATATTGTCATCAACAACCTGCTCTACCACCCCCAGGCCGTCGCCCAGTTGCTGGCGTGGCTGAATGAAAGTTACCCCTTTACCCAGTTTCACATCACCCGACAATCTATATGGGCGTCTGGGATTCGCTATTATACGAAGGTTTTTCACGTGCTATCGGCGTTCACGGGAACGAGGCGCTGGCAAA + +/=<@&6,2J19+(.09(?/:8O/;(,*%&G,1)(9+(&((3?8%+)(9/3@)@,-&E3'%?83'*6--80<683&-'3120.&.&/0%F2/=4ED:5518069)+)?788**0,4>7.+%+6?>J<6I<2',*==0.91(<86,.+)/6/0A07(02.,29A'2B>-=-%.9C*37@/9=264$8+544,(7*++('C-:-83,+1I2+89:/7;)D:'3&+54=*'-);'2?6;)2(&:?;46>8*<>,9,B.@:4.'()*$'+)4(-6A3<=+8F;@=(%(&9/=.(-=7@=:2%8679C,4)@6(8B-=D1,7,1//<5('1+5>-64'4+&:)&B+$,(-(:.:,;30;%3-533#*2';:2FD4@*G38,&=7=(>/G7;?.00,0%:B=30)?/01/$37//953L&37* @S1_5 TCCGCCACTTCTCGGCATCCATTAAACGGGTCTGGTCGGTGGATTAACAGCAGATCCAGATGATCGGTCGCGAGATTAATTAGCGACTGTTCGGCGCTCTTAATGATGTGATCGCGGTCAGTGATGTAATGACCAATGACGTTTTCTTCACGCGCGGTCGTCGCGATACCGCATTTACTGACGATTTCCATCCGTTCACGCAGGTGAGGTGCCAGTTTCAGGCCTCGCCAAACGCCGCTTCGCACTGATAGCCACCATAATATCAGCATGGTCCACGGTGGTCACGCCGAGATCCAGATGCTCTTCAATAAAACTGACCAGCTGGCGGGCGGACATATTCCAGTCCATAATCGCCAGTAGCCCATACAAAACGGGAAAACTCGGGCCTTGCGGCGCAATAGTAATACGCTGAACCATAATCACTTCTCTTATCAGATATGAGAGGAGTATACGCAAGATTAGGTTCAAAAGAGTGATGGTTGCTCCGGTTCGTCTGATGACGCTGGCTTATTTCGCGTAATTTGCGCATTAATCGCTGCCGACAAAGGCGCAGCACCT + pxbkUKc~QFem]~uR~~bpqO{~(X~sh|B:BWp\e~6{~h~3as6-Re\rc~\cA~2qp~`dM~~bj~~L?~~hO~UdRv~cbI~j~z~_o3~k~^~9~~~7u~ks~p6~MuL^~~xpgi~~kYY;f-Ccp~f~~~o\Zs~VO~x~wW@Cor~~|~~H~~o[x3XS~~r~QQJO8~~|~~naJQS~OI~~~XYZZup~S~~gI~|N~_xZ~N~Ea~~_~~]r~e~B~T~@~~nCb~>~JiQ~|~+~~~StN_~~~c:{}~kbm~k~~]w~~~{X~eKX~M~IpxCK?~tm~G~7~R~rs`HQS~X~SfGNb~D~Q~~?~YtbcZRMp'n~L|~NTR4if~f~k\ak[Dr2b~QvXfqxRF\aq;t~VaAkEn`v{qH~~jp~g~Vn1~MT~XdZ]7IaQR~[oB~~|~~HIZ1v~?K~~F~fO^p[ai~aj{~~mg~PFrGU~~{r~tU~~P~~]W5~~~~UP~~l~~j~=w~mon~[~K~cI~Fj7~:rh'~~g~~aPi1VG~rfQh~~xt\pIg>~MFnz~LE^}Cn~sp~iSl~S~lKbGk~:~~+~~nru~~ @S1_6 GTACTTCTTCTTCGGCTGCTTACGCAGGCCATTCCACCGATTGTTGTTGCCGCACTTGTTGTAAACGACCACTGGCAGTTAGCGCGGTTTTGAAGTCGATGATGGCGTGCCATGATCTCATCGATTCCACGTTTTTCCAGTGCGCTACAAGTCAGAACCCGTGGCTCCTTCGTCGTATTTACGTCGCAGAATATGCAGGGCACTCTCGTACATATGCCGGGCAATGGCGACATTGTATGGTTATCGCCATCGTCTTTGTGATAATGATCAGATCAGCCACTTCATCAGCCCTTTTTTAATGCCCTGCAGATCATCGCCCGCCACCGGCAATATTGCAACGAGATAAAACAGTCCACCAGCGGGCGACTTCTGTTTCCGACTGCCCGACGCCAACCGTTTCGACAATCACTACGTCATAACCCGCTGCTTGCATAACAGCATTAATTCCCGCGCTCGCTGACTGGCACCGCCCAGATGACCGGAGGATGGTACCGGGCGAATAAACGCCGCTTCGGCACGCGCCAGGGTCCATTCATGCGGGTTTTATCCCCGAAATGCTACCGCCAGTGACCGGGCTGCTGGGTCGACCGCAATAACCGCGACCTTTAATCCCTTCGAATCAACAACATGCCAAAGGCCTCAAGAAAGGTACTTTTCCCCGCGCCGGGGTGCCGGTAACGCCCAGTCGCAGGGTGTTACCGAGTACGGCATAATGGCATCAAGCAGCTGCGTACTTAGTGCCTGAT + M0ICKB8/C8O08^\=G+)G==56/P8'*;BT,:,<&<-26%PC>9B4<2>3]S++*-B(7/MFOJ;2?N%396@;>HMS.P/BJGF::M_D?L;U0K/32D`@=?g$KL<=4,-AL9$GG_ENGS*3$?Il*.9>BBB52cB2FPEED'@T?J7I4:'4V8H&=-(B41S_0*E;=:B1?<6I8L'6EJKE<:82@I14::1NJK)H@D5BC+:>,;B5&'H=>+CIG('57=:OB572N0@J)3KDC<=D%4C>L77ANN9E9I@>@RFZAJ60',M2@7:@+)A5`;8@=Y'N:A/3(.;IEC-3BT7P?+FFG4>30:JC89?5=D>>8_O?G935:@33-9E:.+=I?EEG/M]8EAM1+GGMB=-%?NGC3<@8(*CAI9M@<:7B.52$LJDY-@J@6/:4B);C$K)@3@-1=XKBG?.@NJ?cON?E?UY0>O8>3:+<=F0b1>-U)5'TA+Rh=aD&;CEY)(=5[+4%?GD:,A24>B.EL86&BGNb$&0>?F5GC9MM.69??4@?M3 @S1_7 CTCCATCTGTAGATAATCCCGTAGAGGACAGACCTGTGAGTAACCCGGCAACGAACGCATCTCCCGCCCCCGTGCTATCGACACAATTCACAGACATTCCAGCAAAATGGTGAACTTGTCCTCGATAACAGACCACCAACCTTCTGCACCCTTTAGTCACCAACAGCATGGCGATCTCATACTCTTTTGCCAGGGCGCATATATCCCGTCGTTCTGTGTTTTTCCACTGATAAGTCGCCATTCTTCTTCCGAGATGCTTACGACATCCGCCAGTTGTAGCGCCTGCCGCAAACACAAGCGGAGCAAATGCTCGTCTTGCCATAGAATCTTCACGAATATTAGGATCGAAGCTGACAAAACCTCCGGCTGCCGGATCGCCGTCATCGCAGTAAATGCGCTGGTACGCGAAGGCTCGGCAGACAACGCAATTGAACAGAGAT + L<;N7M7?>E3,58.=+2TJ?-0>?(9Q9:;79AV8C46DV'72O<2\C.6FH<4J>-F:>.EN40F;:>,N@UA<:IT@V3632''3/HB0;L)C%6+;KE6:/:8?15-C%RO3=SRCI.-5=POG@HW:?@GC4LD/==J.56&C',;>%>@6W*3BM&0?@I=A7g0AU.;iN7.A77&*8A=L23f*4DA8=AU7ABT(5O?.1E4&>5,M:@2A71D@:I;:QNE&=B*5>.;3K05N<9FL=U[IC/M(3)N2>K>0dOF%6:+GWV*]DCL:01;L17+.%HJ0Q:;9N>8*DE=9PQFA @S1_8 TGACCATAGATTAATACCTGAAGCGACTGAAGCCCAAACCTGAGGGTCTTTAGTGGTCCTGCACCATTCAATCAAAATATCTACATCGATTTTCGCAATAGGAGACTGATGTGAATCATCATGATTGATGAAATGCAGCCGCCCTGTTGTTGATCCTCCGTACCACAAAAATGCGACTGAAAATTCTTTTGGCATCCATGCAGCGGTGATACCGATAGCGTCTTCGAAAGAATAAATGTAGCCAAAATGCTCATCAACAACAGCGAAATTGTATCAGCCATTCTAGCTTTTCAGCCTCGTTGCCATCGAAGCGCAATGTGGCATCGATAACACGTTCCATTCATAATCCAGATATCCGCCGAGATCGTTGTGATCTCTTTGGAACCTCTGGATTGCAGCGGATATTCCGATTGTTCGTAGCGCAAGACCTAGTGTATC + 9)Y'FODZJJ3pM/cKH<4A6>BR35`[@X9*]2,T9fMboY]*=6MmE9PN~9[3AT?7+J:<4L3AI8My0~)S612N>^B>5>DvE;6HjU;BEA:EK&E4%`=6+B;Q?P5cD,_@=1?JrKCXCQ@E3l@/;FYK9J55P>B?:F^N9MM'KDNdC>EWKt<~]EK477L%c5@70=<>@+?AbC?@7eI\:<[6Z`MB2AS.zGJ/bsBL)83oN[Ol6OXB/1)=@ORE6H%E8&ID~BF>M-LS|BP58&(KC,)]46S>55:O6^IE?7`1;~;;A.U+AWO;:27B=?6YaBI1N;(3X;H5;aT0>(DT9;2ZQL=CA]>?N>YC)]I]F:AX7I=d'X @S1_9 GAATGATCCGTGACAGCGTGGTATGGCTGCAACCGCACTGGCACGAAACAGCACGCTACCGTCCTGTACCACTGTCCCGCATGGACGCTTTCGCCTTCGCCTTTTTGCTGCGGGATTGGTTCGCCCGTCAGCATCGCTTCATCCAGCCATGCTTCGCCCTGGGTAATCTCGCCATCTACCGGCACGCGATCGCCGGCGTCAGGCGCAGCAACATACCTGGCTGCACTTCCGCCAGAGGCACGCTTTTTTCACCTTCGTCAGTAACCAGGCGCGCCTCGGTGGGGTTAAATCGAGTAATTTCTCCAGCGCTTAGAAGAACGCTGCGTGCGCGTGCTTCCAGCATATGCCGAGATTGATCAGACCGATAATCATCGCGCTGGCTTCGTATAAAGATGTCGCGCTTCCATCGGGAACCACTGCGGCCACAGGTTGACGCTCATCGAATAGAGCCACGCCACGCCAGTACCCAGCGCCACCAGCGTATCCATCGTCGCTGCACCGTTCAGCAGGCTTTTCCATCACTGCGGTAAAAATGGCCGCCGGCGAAAACCATCACCGCCAGG + X\R~vw~lpC~~Z{ni]Q~j~c.Ci~>g|m~l~~cj\`3~V~bsa~@m~~9~K~wc~~|eR`~~DLJe\~Hv~[~EW~c2rT~lAb~~~aA~~~~~,~G]~9~^_~her~g~J4f1PN~Ct~~`~n>~TO~~S}WaO~~~eZ~_G~a\J;Q~-P~q~~J~~B~~o~`~lRm~[6HS~Yr~^qfJ~K~Z~~D~~~|Y~~^s}^a~ah~l=v~~YpQ,q~SoRjj~~u6k}MDH[k~~~~7uI~mgL~g~aiAw~rK~~~~z~~~UKb~~K~ZYb~os_~FpXPO=qHnoDn~8OnX]~>~~zK(~~od~I[kdnjW~x~R~^~oqmx~Vho~~i~~WY~SeYm|~7~l|~~N~~lW;L~[cZ@\t:D~H@~rKe60U~Z~n@~U~PozJC~rP~~~|~~~|_L~tOv~~~rX~U[`g{:a~~~~d~~EXT~~wB\1X~~7gSEVje @S1_10 AAGATGCGGGAATCCCGCAAGGCGTATATGGCTGGCTAAATGCCGACAACGACGGTGTCAGTCAAATGATTAAAGATTCGCGCATTGCTGCTGTCACGGTGACCGGAAGTGTTCGTGCGGGAGCGCTATTGGCGCACAGGCTGGAGCGGCACTGAAAAAATGCGTACTGGAACCTGGGCGGTTCGGATCCATTTATTGTGCTTAACGATGCCGATCGGAACTGGCGGTTAAAGCGGCGGTAGCCGGACGTTATCAGAATACCGGACAGGTTTGTGCAGCGGCAAAACGCTTTATTATCGAAGAGGGAATTGCTTCTGCATTTACCGAACGTTTTGTGGCAGCTGCGGCAGCCTTGAAAATGGGCGATCCCCGTGATGAAGAGAACGCTCTCGGACCAATG + ;K?YKd)0B[,=CJ@%/:Ll<)(RVGZ4%MHI@)E1=FGSTJD=L:KRF?09AC,J/;TA*A0TVI;EG\MO`GBzY42R_9,MPB>8Q7*6)D>8DKQ0fD8YAL7=X>3RHFYN@9~7B)PXE30-V9E32Q)GC9dMuAZG)P>B*L*YN40J<8.DCIKIQ.8ILENK$II?O>W4-9*4@DT0NaIGbLG.26NVMTZ.BECG\LNy<33OK=7PI8NFc='.\O;~d5.@Ma>yIBmlxB-JT;RBEE?T9@_4E7CBNG9TDrSDA2U@H`AR88I13?n@T[`MBAEF?S?:Q7RG>J(=dB35-2J8EI%MZ:AL.%;T5L0KD?`zELC:cwp=gS>~~ATL-*~>YS[3vuP>j~k;:k+~`vkC=-~w(OF/Q(~zEZ~>S@98~\C4Q+_$XTCRV>MG]f8~Q6slbUc0jWfDMRMC{~~1FG=0EG5:~[:Qj(O)L$lO>YPI~]ZSYEW]Jgc]sTTpB^J6MVjwVJ7RdG~K2F~_HFaAcWP@aF[HuE]D:BfP|@T~@EFC?i;;`|JQBYN`]s8V|RW3QLTMZ<:W?>WL+dEcKL*\i?LQ6C:,Rd64~KBFEJ[QVE\G6)lA=T~*g7S|8KZZ~ONsWa~~sWOOZySOXJ`k&\ThQ:MITlcPGB8~+3YWK;86d\ULiGCjboHE^RJ+I=BM @S1_13 ATGCTGCCGTCAATGTTTCCGGCATCCACATCACCAGGCCAGAGAGCGTAGGCCAGTTCGTCATCCAGTGTTTTCCATGTCTGCTTGTATTCGCGATGAATGGCAGCAATGACCGGGCTGATTTTTCCTGTTGAATTTTCACTGTGCTGTTGATTGGTTCTGGCGCGGGCGAGATCAACAACAGACGTGTATTTTCCGGTTTCCTTGCGTTCACCTTCGCGACGTTTTTTCCAGATGCGCATCTCTGCCTAATTTCGGGCATTTGGCACCATGCTTACATTTATGTTAACCCACCGATGGCATGCAGCTTAAGCTCCGGATACATGGCGTTAACTTCTGGCATTTTCATCAACGCTTCAACGATATGTCCGTTCGAATGTTGCCATGTCTTCCTGCAACAATTCCTGTGCGTTAATAACCATATCAACGGTGATGTTTCACATGTGTCGACTTAACCATGACAGCGTTCCTGTACTTCAGGGGACAGCTTGTCAAAATTGACGTTCATCGGATCGGATTCTGGTTCGACCGGAATAAAGGAAGCGGATTCCTCATCCCAGCGGTTTTCCGCATATATTCAGCATCCCAGGAATCGAGGGCAGGGCGGGGTATACCGGGTTTATCCTCGCGACAAGAAATCTTATAAGCGCAGTCCTGAGCAGCCGGATAATGTTCCAGGAATTGCCAGTAAATTTTGCGCGGGCGCGACGTTCATCACCGCTTCAATGGCAGTGGCTACAGCGACGGCACCTTCTTCCTTTATTGCCTTTCGTCCGGAATGGCGGGCGCAAATAAAGACTTTACTCATTTTGTTTTAACCTCAT + =0S'A.R>?5);/;1>&MiR*K7>?>;I*E??:<@nA%>CJ**[=5n>.fWE8H3O6/199F;H1>66?6U89>K9IJ:V5J:-ERVA3GlC*9LF&4H=7%65[>=BG>*?7A7D?4/U,F?X=*NO414*4?I?HW@P=69%:11S<89?@S&)>P=5+E8M4C:>A=;AHIB0>8AX1=&6T'9:,MX33(0(1=7I.JR9M]V/896>@:4N@5I1C4;NK-<%AGI4@E/;2A@?=:@*I8GB<1G0h,3U(A:E?^9,CC,@3UWWF74T9>@JFK>EUF/^K*19@?=3F+IX&4;5@02UEH5UAH0?$7&KRF2=ID3>6>b7H:@8,657*?4DJ;FK45CDh9D6)PJM;I0DE5&7@JB/8P8DK*>A8D6L(=.B9<>741>=]?J?N<3FL@;1BSI=AALC+>I^\6IG=73<9?>4>Fc86S)d[>j/F_&F$)@&eG26IKD;'\7^/B86My2qLA.;>/XM1IN@89HYa3E;@08DFBMIRXHD<,4,4?RI*\A;4-DAG-O&E=ZB4H1yUOCDTKG=.N=2JQAT8<:S??5;M-O9+[8[&/PUQ>E8B9N2@E`@QLKVG;/H?YS5HMQ.zDG?-]?g77FFcW=NF+e4=+2.;l:\)-=>ncP?VD>-0;%+4>3NO/9B3OERM6L1I+CG%I&75MII>IL\>W$C00NK;B=d7=%B,7BEE/7?CA>oY.a;V**9)QI>;ANB.AF;C+IH0SILA\,FH4(E~O4?ESOW9V=L;:&QK%OR5OXIJ;FIBfEBMM7HZS>&LLW88@R-9*L3ISU@K@VGI63}C9CZ@Y9Cc1.5E[94;<5;FQaQg:IFPZ%&3D;HHUDD/KRP>/:8TRD?kSE:/EU7AV8gM]F=OA67C>~YBHB2~ts_~~,t~VbR-L{_3~A~~~B3p1I~I~~~sbBcH~~~J~C~KnDNkN~Y'~E\pTI~R~d~Jl5>M~~F~~=~H~~d~xl~Nw5~~LhE~~~~Q~~M]wXNQI~HA~q~[~~Yii~_|[Ur5~O4k~P~WW~kO~cWW~>a~m~H5qWh~p~i[7Xv~WjPpGj~~~~(~~ao&~~~S~W~[FOd~j<~~[~Hg\~MVm~~~IY~8~r=n~~~~~B~T~[88M~jmxg~~Po~]~~LcXS~~.w~~~N2bm~f~~~4O~uIOK~[~rkR @S1_16 AGAATAGATGACAATTGCGTAGATTATATATATGTAAGATTTGACAAAAATAGCATTTTCAAAAAACTTACCTACTTAAGAAAAGAGATGTATTAAAGGGAAAGCTCATCTTGATACAGATGTAATGGCTGATTGGGTAGATACTCAAAAAGAAATTAATTTATTTACTCTGGATCGCTCAGCAATATCAATAATAAAGATGAATTTAACAGGAAAGGTAACGAAAGATTAAATGAAAATACGAATCTCGCCGGGTACATGGTAA + 4B?8LpdR=VTanGQJl~3,w~~\uXl6cRapQ\~\ScAa6j@~xbHaMF.lSR`7o8EO>0.\;FU`9KJSO=GGYV2oZ7KAY<3A*J_@McYFjB5~J?RvJxAdPEH|Kg;f\A.^HOZiCF<6E~f]>GVW~S9?rO9+E*R*~TMG4:w4>ezPd]~~cRF @S1_17 CGCCATGATTCTGGTGATAAATCGCGTAAGTCTATCCCGTTGATTCGGTAATGATCCCTGATATGAGAGAAAACCAGAAAGCGCGTCAGCAGTGAGCTTTTACCTGAACCGCTGCGACCAACCAACACTGCACGTGACCTGCTGGCAAAGTAAAGTTCAGCGGTCCGGCCAGCGTTTTACCTTCCGGCGACGTGATAAACAGATCCTCGGCCTCAATGGTCCCGGATCGGTCGATGCTATTTCCGTCTCACCGCGCTGCGGATGGGCGAGCGGGGTTTCCATAAACGTTTCTCAGACTGTCAGCTGCACCAACAGCCTGGGCTTTAGCATGTAAAACGACCGAGATCGCGTAATGGCTGGAAAACTCTGGCGCAAGGGATCAGGCCAGAAAACCCGAGCCAGGTCACGCCAGTATCGTAGTGACCAAAATCCAGCTCGCCGAGATAGGAAAAACCAAAGTAGACCGCCACCAGAGCAATTGACAGCGAGGTAAAAATTCGAGAATGCGGAGGATAAAAACGCCAGCCGTAGCACTTCCATTGTCCGTGGCGGAAATCTTCCGAAGCAGAACGAATAACTTTCAATTTCAGCTTCACCACCGACCAAAAATACGCAATGTTTCCATCCGCGCAGGCGATCGAGG + 8bHGI1PBM]E1XG7.E@MFMG4;VNO;V%76nA'672M6'2?6GE30H(6:=2;H7.C>=&1:7:39.ACDJ1>*PF3D6'*HH$(+.EA.37?*35<9N,(2J@5EJ%PA(=O8=U;./?5QM7_A,T^a??E9B=*U>=?)[;:\O7-?NP<4FWMKN88;:'6?&O=>9>,8==K98T;28O[*K8;32GCA7=C88-9F0=@B=:>JLV?18&H092:@\@DI?LBP_%.C=3K=.8J]I8D.9U89@HMAP>A-8A41:FlG:CB9hO(FFE(4CSBGD=L@%Y2M?])X3@3.39>F5+^~I&GZX9E/9*F:&=M`362BI0EK6-@HIV4J)I/;:E(5F,R<Kc=5D*,D1@=]F-(&K;B=%(E:.92S,5Z<5<3<(8.3PB2/440+D7@D95A>CJ;5AQE:9WL;I=02B99P.?^J9 @S1_18 TGATCAGCGCCAGCCCTCCGCGCTGTTGGCTTGTGCGCCCGGCGTCAAACTTAATATCTGCGTATCGCCCTGCCAAATCAGTTGCCGAATACCGTAACGACTGCGGATTTGTAATTTCAGCGGACTGTTTCGCCAGGTTTTAGATCCCACGGCGTTCGCCAGAAACACCGTTAACGTTTTCGCTGTCGGTACTCAAGAGTCGGTAGATTATTTCGCTGCGGATTGTCATAGCGACTACCCGTAACGACTGCTTTCGGCAACCTCGCCCGCA + :hKpxxYouH~V~TeZa~O~BiwF^U~x~]g~~xjTVvp_Lk~~WP\~Da}^j~Uh~bLFO]~sGM{MrRpm~Je~]~~g~M~TK~~~=~~78nwLjX\Bm~b=u~~~c_QL[~cjh~Wn~~r~XP~~W~}~bA{~~mp~~~B5akl~esP<\p~xpZQ~V}fgnFVUd~~Ga;~~\Rg~tev~2[^]ds~~~~he=c~b~~d~Hc:vquSl^T~~=ox~tt~Y_X~d~\w`B>[QV_~w~~~IF~~NW\~|~m~E~j[[w~~~~~~~QpU~PN~[~wX~~.{hobsK~~jZ{+~S~nD~~^vBonOT~iS~j~N;Cp~~UV~~V~~~U;mJO~2~TQ~O~5~~~~~~d~`gCXMJ1~~=~^~~@-gZ,Tl~WP~~AY_XI~~1>~LAx/JtK~ZS~~\~8~cDA~~LRTgJ~/L~~\~_H~~@~?Bj~dQ}BypL\eF]h^kWJ~~~~|;~[~r~~}cl~yO~@~~O~~pS~@XGnS~H~~~T{f~Z~_~r~~\{^=~H|PJc?f[vhI~L~aOQxJnoZL~G~7q~~e=oz~~~RCG~S{z~?~.~~o8Dj~0V~s~y~~~g~~~;~~m@oN~a~{FuQ~ii{koP~n~~^~~Nq~3broUH~~Z\re~qKQ?~ka8`~}@ZX0X~~Y @S1_20 TTCGTTGACTTCGGGCGTCACGACGCGAGAGGAAATACCGCTGCCAGGCTTGTAGCGCAACAACAAATTATGCAATCGCTCTTCTTCAATCGGTTTCGCCAGATAATCGCTCATCCCTGCGCCAAGCAGCTTTCTTTTTGCCCGGCCATTGCATGCGCCTTACCGCGATAACCGGCGTTTGTTGCTGATGGGGGAGCTGGTGGATGAGCTCGCAGGCCCGAATGCCATCCATGTCAGGCATTTGAATATCCATTAAGATCAAATCGAACGGCATCTGTTTCGCCCGTCAACCGCCTGATGCCGCATCGCAAAGTTCCACATGTTGCACCATATCTTCCAGCAATGCGCGATAAGTTTCAGGTTAGCGGGGTTGTCATCAACTGCCATGACTGTCATTGCCAGCTTGCTTTCATCGGTTACAGGCAAAAGCGTGTTTTGTTTGTGATGACAAATTCCGTCAGGGCAGGCAACAGGCGCGTAGGTG + {~a[X~~Xd~7l~V~i~3tC[SPs~x~PI~nr~~~~~kW1PCnK_TcYV~N`;L~u~mt~V~D~~~~fD~TZ~~T;9~^Ci[iZk4~DpYwuS~]EZB\c|slpK~`~fn@~~\<`^~V~Y~Cobfd~Zp~~~f[BSk?h<~P~;VFO:L~I@~gi3~.\T~FMOS;PmH~s~~Y}~P~~_\~fI`~KAlXFTNXePH{~UH[~~cp~wQo0qTTix~djWkvZh~n~~~P~GZn~~~j`~~Mf@d~j~K)7ea]~~}ai|v_r~~Yhrrxhb~~U6e~~`n~~~~ouw~D@rUdY~l~ZEOrX~X\~kE`}dQl_L~~r~~{`I~g~a6~XRps7~~yJt:~8:GcQ~~~~~S~~GPdYTbti~~Xu~~~X~_[~jn~Ula~Kdr~[~^z:pUYnSuK~\~.~@Gj^eEb~XT~~~~>a~~fo~~~*K8iWlW~ubT~~]KuzNlK~IRP~~|TjPGVJ~~dg~?A~Cb1\:~LMgWKJGLNb4~'[M~T7O;+K6CJI0L:dRHZEebUzpH5ZCYX7F~XIX2ZfTY\e6SDI~[[L=%HcH=;HmPN~~Ra~^k_So>fGTFy^ZI-H\TD~W0;@`Hy[XIH6~hYh+=sFPP/zvfDUITA`XJ[8PEP;KUBHKX{.EAE-=IF_pYAhWUA?6~1B2C,AG^_EI%m4ORMNYtBYgbY^4W~=T)MH*NF5?2KV3~\TBtc~d/TEQ~bWU]i=L$SNNWDK\KacK<2J2 @S1_22 GTCGGCGTGGCGCTGTTGCTGTGCGACAACATCCGGGAAGCGCGCGTGCTGGCAAATTGAACTCGATGCGCTAAACCAGACGCGAAAAGAGATCGAACAAGGAACTGCAAGTTGAAGCCCTGACCCTGTGCGAGAAACTGGAGGAAGTCGCGACACGCTACCCGGCGGGCTGGCAATGTATCACCCCGAATGGCATCAGGGCGTTGTCGGTATTCTGGCTTCGCGCATCAAAGAGCGTTTTCACCGTCCGGTTATCGCCTTTGCGCCAGCAGGTGATGGTACGCTGAAAGGTTCAGGTCGCTCCATTCAGGGGCTGCATATGCGTGATGCACTGGAGCGATTAGACACACTCTACCTGGCATGATACTGAAGTTTGGCGGTCATGCGATGGCGGCGGGTTTGTCGCTGGAAGAGGATAAATTCGAACTCTTTCAACAACGGTTTGGCGAACTGGTTACAGAGTGGCTGGACCCTTCGCTATTGCAATGGCGAAGTGGTGTCAGACGGTCCGTTAAGCCCCGCCGAAATGACCATGGAGTGGCGCAGTTGCTGCGCGATGCTGGCCGTGGGGGCGTGTTCCCGGAGCCGCTGTTTTGACGGTCATTTCGTCTGCTGCAACAGCGGCTGGTGGGCGAACGTC + =e.>K%A==6LD9(*?A1+36d(C=B49M>DL%K88K\8751>/4A396K,AK/G6I$C0&8&'DOP>M4KB;M71]BA4?HB4AHI4<>?.@997+>,1Q475@63K>:F=AO*+DYME5.IF>4)1I:=@D?5EK%>8:48%CSBLN=?/.L:B+=K::K[)9GH2G6)/):EE7K?E6AMXFV5D0(jFAG8>+RJH2$@29D@M;=61PUOD:66Q8JC=)>=/;J;/J$9EDU?BS8JK62&1>L,:C5ME6M9FDJ:$JHE%34B/-[=S0>-28FA>>Z3IK-'$T;%42EHV=;+,:+&*AC6=P:k:NFE2MG260F*PYLL;H<'D?)GD3@/-=.'8:G)4=I)0?.*==;;5O<6<>7O<,6;@4f6MH@/1M@B>TKE>%EEPF$MHKGGS?0=I0H0I=)4+>8IG9,4::GLB:>@A.=6G65M-0ORCUC4<~'EO/=5)3C1.C6G7H'@A7YE%L.CHIQ37<<2AU~1D/PK8E@C%A4A<2K>6Bb5NYM*M?GG:22P-?f@4KN+U-D688@>M)I4%0K:E,/A78>;:%$0LNHH><@9ICQ0E3;4:4CA873014A,5A5B$(Q>&%P7C7=P?;C<07@(/I28@JYKU3[\EMT(7/%H<:455/T8QAK1DZ;V;44)P6&A.X/<,0F@@g99CJE@R(GA%E?V<6~9@&=4=B2A7VDP<@5-O=27)=P*0V?/G(>L@=+*BJ1[GOMFZB89C@DE?+6E'JMI9OBZP4 @S1_24 CACTACAGTGATATTTTCTTCTTTTACGCCAGAGACATAAATATCTTCCACAATGTACTGCGCCAGCGGACCGGACTTGCCCGTCGAGTGGATATTAATGGTGGGAATACGTCGTTTCGGATAGATGCCGCAGCGTAATGTGCCGCCACAGTCGATTACCGCGACACCAATTTCCGCCTCCGCGGGTTCACCTTCTTTAAATCCGTCAATAGCCTGCCAGCCAGTAAGCTGTGCCAGTTTGTCAACAATCG + SKRj~~[~/~I~}~Q^QUw[~=MGW:~Vkgj~w~9Gw^>cC~b~~a~~fpWPaS[~X=~rYS[~~_~^~~qwf~NOLFJwfQ~~g~nm~>F~YSuIU^3o~~~P6V~e?S,HY~_~~~uo;xcxOU~gb~3~tlJb~{xz}c~~[LhH~Bf~~~b~~~N\p~=LkP^Bz,~[PYDohr~~}JoN~~~k~~~X~~S^~`fq @S1_25 CAAAGGCTCGCCCATGCCGGTGTATCCTGGCGGGGTCCAGACATACATCTGACGTTCAGATGCAATGCGTTGGAGTGGCAAGTTATGGCGATCAAATCACCATGCGCAACAGAACGCGTATCCAGATAACTGCCTGGCACCAGAATCATACTGGAGTTAACCTGGCGCTGAGGCTTAGTCATTGCGGTGCCTGTATCAATGCTGCGTACACCATCAACATTGAAAAAATATCGTACAGGTTGCCTTTCAGGATAGGTGTGCGCCACGACCAGATCC + VIA}KOOL[H^CL]G0x}SL`u\YRA=GFHIYaXTxnh1R>eRH?zK9R^CDV~[<~UAD~X[L&~GogJJ^}[5:E@$UZCWDCE=~WK~DdZ`dYgH=~O{o>^_@[_jH`MY+OS$8~~:OIV%/KHA3UrYeVIa*lUIU0bFBF16.bAQ;pB>'G<4~baN6p@8^iPEU'YUG^\IOZYHR}DC$M4~@l;1^I=;~KNBLnnPDCyP~Cs@~=P~HUtV[]p{Y~X~~\e~je~~gNC~S4l~.T~zq4j}`>\hzbJy~_W8~F~XYA~[Fk8G~~oF~K~~~~q~lot~~jf~NX~D_t}5~8~~~~rknaa}U[~s[~E[^]Gpyvd4QFGM~I_~gk|a~Ig|W~ev~Y~~~~~A~?Xp~PlcH}R_N~~~t6u~~~Xs~PMf~~Zkww~ouK~~~~G~f~~~~Ijh~~?f~6~n~T=ez~~:@Y~~@~kma9_GN{u~ffNTjE~BHxmqpAvb`OFh~a~BR~QcuuJ@?FE\-~dJ[~j~v~B/D~U~`=~w.~~ai~h\~^~~=~~`eA==~J~~~FzZ~Y~~NZJ~~b4j~jK~N~2x~A~~2[~~fG7Ndm~b~~~iX~~BM~~_}k1ktiFa~r\=~KU~~P\[~Q~K~t6~mmR~:5kzXb;~~L~~[/b5~~I~~~5c\~W{^X{cD~~M^}C]x~~~xU~x~~j[|Y~~J~fY~~j~~]~Q~;]f~~OZ4~~tfT~~\g~V=~r~~A~~Q~~~k~UO~TY~.VegYK_yw~~g~Vc{]JI]uuLGeQ[UgbDU~ok~~~cG~Ft^a~~n~~~\\~h~>s;Z-KqhjAU~~f~Yrk}~BhX;POao;zF~TLQUEq~_d~KOS>kt]~^eQeWPcfnTF{J^~Ib~~~EJ~VG~GbFh_U~_~QtG}~K~sY~PfI~~A~~r~/Z,cQUshO~NO]C{VTS~\O~r\qmPMO~=P~~cEE._C~\XFd~`gP8~N~MYgjmc~Di~~[E~RF:Z~`v+~]MApQ}m~ @S1_28 ACAGAAAACACACGAAAGTTAACGTTGACGTGAGAAACCCTGGGAGCGTTTATTCTTGCTTCTACTTTCGAAGATGACAAAACAGCGGCTCAAACCCACTATGATGCTGTCTGGCTGAGGGATGTTTATGGGGCTATATGGCATTAGTATAGATCAGGGAAATAGTTAGCCGCAAAAAAGGTTCTGCTCACCCTATGGATTATATGTCTACGCCCGACCAGATTAGCGGATGCAAGGACGTCA + F6>:77&9@=00.Z75:<-=,C:7FRDW62%/=<>JJ?5:-:B47'@J=C7?:K(1DC0,'-2;BI5;8>&=*CG:B831.>K>8UH/B$5A)>-E7:1F*27+Q0;@?EGC7B6G>-'6)3Z.G,K0<-'<88@4=.\1LGO1:4*+7(7:27=+9:4M?3:$?)41/08+V669A6;%5M8?1%@A:$;)0&$I'0,16<55P?B<&1=3.OP5R;'6;=6C;6?=>@Bc2$2,?%>=./K @S1_29 AAAATCAGCAAGCGAATAAACCGCTCGCTGTCCGGGTTTTCCGGCATCTCAATTAACTGGTTGGCTTGCCAGAACTCAGCAAATGGCGGCAATTCAACCTGCTGGCTTGCCCCGCGCTGCCGGGCAACGTTATAAAACGTTTCCAGCCATTGCAGCTCACTTTTTCCTTCCGTAAAACGTGCATAACCGCCCTTCTCCCACGTTCATTAACTCGGCAAAAACATCAAAATCATTACGCGCTTCATAGCGTGGCGGCACCACTGCTTCATGGCACCAGATGCTGATACTGTAACTCACCGGTCATGGTGAGATCATTACGCTCAAAAGAGGTAGTCGCAGGCAGAACGATATCCGCGTGTTTCGCCGCCGCCGTCCAGAAGCATTCAGAGATCACCCAGCTCCGGTTT + I,EF=DE=*8;,&PM'585:I9:E63T=CNKa=)E[5TC4%F==>:<816J>,.PB7)+H,=ZW?+5JAU@-0(AC;(%.NJC[<@-H.2(GD%EGAa*2;CLA2<5C%II:.\9,?=O12]PD0N:h1GLU-A4A4>:'2=KK>6<00<+OL378&6'1F-AE-CM>Cj@O^A5*M3;CA8D<+~J,6LJ?=S4AA,B4,FCA7SCD/AMH=?G??+08/AA@D'.=N^HE@,-IBNT.&?@83? @S1_30 TGCACAAATTCCCCATTTGCGGGTCATTCATCTGGCGCAAAACCAGGGGAAAGCCATTGCGCTTAAAACCGGAGCTGCCGCGGCGAAAAGTGAATATCTGGTGTGCATTGATGGCGATGCGTTATTAGACCGCGATGCGGCGGCATATATTGTGGAACCGATGTTGTACAACCCGCGTGTGGGTGCCGTAACCGGTAATCCTCGTATTCGAACACGTTCTACCCTGGTGGGTAAAATTCAGGTTGGCGAGTATGCCTCAATTATTGGTTTATCAAGCGAACCCAGCGTATCCTATGGAAACGTATTTACCGTTTCCCGGTGTTATTGCCGCATTTCGTCGCAGCGCCCTGGCAGAAGTGGGTTACTGGAGTGACGATATGATCACCGAAGATATTGATATTAGCTGGAAGCTGCAGTTGAATCAGTGGACGATTTTTCACGAGCCACGGCGCTGTGCTGGATATTAATGCCTGAAACGTTAAAAGGGCTGTGGAACAGCGCCTGCGCTTGGGCTCAGGGCGGTGCAGAAGTATTCCTCAAA + 9BK6XdQH[AJE?I~S:'lAaD;K?52tRW7Q@=M:EIGG9J3~)C3`F(W5;EKIF5Q9,:NZIEN?EO2 @S1_31 TGCGAGCAAACATCGCGATTAGGTGGGCACGCGTAGTGAGAAAACACGCACTTTTTTACGATAATTTCCTGAGGTACTCACTTCGAGTACCTGAGTCATTCCGGCGCTAAACTCATCGCTATACTTGTTATAAATCATTGTTACTGCACGACTATTTGCGTATTTAAGTGCAGATGCAATATTAGATGATGTAAACCAAACACCATGCATATCACGGGTGGGCACC + ~~8`?{}fQMv~b_d{/jFPbHp~~]fv~~amse~|E_~EpX~~}AO~^C~~RSe?_~g~~~lQZQ{QspD~~~gn~e0Pn~~~~Qw[HCZ~~v~@~b?Q~MJw~a~~~~~`|Y~vmr~ef~~de~X?JIX~[Rn9witUg^dH~`m~~UePBPcZ~~`~x}~~~D1Ztar~~~~SM@0~FS~PeEY`u~UT_~R>~3LZcl~~Zi~jq/~~T~~h~~~a~~{~m~ @S1_32 CTTGCTGAATTACTGAAACCTGGCGGAAAAGAGATCCTATACCGAAGGTAAAGATGAAATGGCGTGGCTGAAATTTTTCTATGATGCCGCTCAGAAAGGTGCTCGTGCGAACGCGTGACTATGCCGATGTTTAATGCCTTCTGGCAGCAAAATAAACTGATCGAAATGCGCCGCAGCGAGAAGAACGAACAGTACGTTCGTTATCTGATTTCCGGCCCGATCCGGTGAAAAATGCGCTGGGTACGCCAAGCGGCAAAATTGAGATTTACTCCAAAACGCTGGAAAAATTTGCTATAAGGATTGCCCGGCACACCCAACCTGGCTTGCGCCTGATGAGTGGAAGGGTACCGCCGACGAGAAGCAGTTGCAGCTTCTACCGCACATCCGGCACACCGTTTACATAGTCAGCTTAACTATGCGGAACTGCGTAAAAAATATGCGGTTGCAGATCGTGAACCAATCACTATTCACACCGAAATGCTGCTCGCTTTGGTATTGCGAATGGTGATCTGGTGCGTGTGTGGAACAACGCGGTCAGATTCTGA + 2IEH?Q&RA7O'Y>@U>%GQ6tRL?88?6M%=>E=0==:4_+E3Qo&4K=Q>@<%E_5.O;@8>0~7XPA71BJGObCCH6;%x~>D]Fo)6?:FXHRN?9%FD0<2@681JBOI5*5F@/VP-6;=%FF9HGJhfA;S'k(PBD)H6CPJ,3RCMAU->P<%>=7LBII/PH6hq<2~SB:R=4=ZSrPDF7?BGIE,H5DO5LMC>WC6=1>*;Lc0),$h;@Q8?=J(YD2@9X:~M1E@:^T^yO?>6?=U4B.FS/f,I/T8UNI4F88DM@A30<9]F?9F7A.X/5>U`9GP>7g:RE3[wH?.`J= @S1_33 GAGCAGGTCTGAAATCCTGCCTGAACCCGCAACCAAATCCCACCTGGGCCAACCGCATGTCCCCAGAGTAACTGCGCTTCAGCCGCCTCCGTTTCCCCATTGCTTCGTTCACCTTCACTCTTTAGCCAAATCCGATCTGTGTCGCTCCAATCCAGCTGTAACACTCCAGCTGAAATTGTTGGTGTTATCCGACCGTTGCCATTCCAGTTGATCCAGCAGAACCAGATAATTAATCGCACTGTCGTGAATCGCATGCCCCTGTATTGCCGAATGCAGCCTTCCGGTCGGCATCGGTAA + CU4G*I8U<_.V*J;J>4HNJ=K09MC=W*U>Y><:&E1LS7E78V[H>D>>7*UC1=U~?*=I@(_PF*CNH?wVGYB:KM(-@JUAc{?=T3m81S5>;DPB81-3HQPIXRM;T`PO^40NJ.tR9D5E)?RDVF*WASCBC]QWJG?Y_DD\3/MF>-3I.NIBK*K1WDGMA?cB>K=I7W[M<:@ @S1_34 ATTAACGCCAGAGCAATTACAGAACACGCCGGGATCGCGAAAAGTAAAAGTGCGCAGCTATTGCATCAGTTTAATCTGGCTCGTAAGCAGCCTTTTACTCGCTGGGTGATGGCAATGGGAATACCGCTAACCCGGGCGGCGCTTAATGCCAGTGATGAACGGTCCTGGTCGCAACTTTTATTTAGCACGGAGCAGTTCTGCAGCAGCTGCCGGGGACTGGATCGGGGCGCGCCAGACAGGTTATTGATGGAAGGAAAAGCGCAATCAAGAAGCTGGGCAGTTGGCTGGCTGCCCAGCAGATCACAGGTTTTGAACCTTAGTGTCCTCGTGGCTGTAGTAAAGACCGGTAATCCAGCTAAGGCGTAGCGCCAGTAAGCGGGCAAAAAAGCCGAATACCAGGGTGGAGATAATTACCACATCATGGTTAGAAACATAGTGTTGCAGCGCGATGTACAGACGCGGAGGCAAATGAGACACCGGCATACAACTCTTTCTGGA + /L;JZ=G:VOGY0~ZXCK~wBNAeIIahb=SQWLZDX*<~A@V*@DZPLG8^S6P~O~c~w1PAPxRo~Lju[M{}NT:~YCX?IuvUuJTPMhc~L/kHOIBym=RFO\~q\WhgA]8:7]HDA;C\>ldKAcFh[uqvEmc*>ERM+[Eo7\t3S~oRFEXjcEH/MUF^-_3IYFsPOAy_ @S1_35 CAACCGTGGTAACTCCGGTGGGCGCTGGTTAACCTGAACGGCGACTGATCGGTATCAACACCGCGATCCTCGCACCGGACGGCGGCAACTGGTATCGGTTTTGCTATCCCGAGCAAATGGTGAAAAACCTGACCTCGCAGATGGTGGAATACGGCCAGGTGAAACGCGGTGAGCTGGGTATTATGGGGACTGAGCTGAATTCCGAACTGCGAAAGCGATGAAAGTTGACGCCCAGCGCGGTGCTTTCGTAAGCCAGGTTCTGCCTAATTCCTCCGCTGCAAAAGCGGGCATTAAAGCGGGTGATGTGATCACCTCACTGAACGGTAAGCCAATCAGCAGCTTTGCCGCACTGCGTGCTCAGGTGGGTACTATGCCGGTGGGCAGCAAACTGACCCTGGCTTGCTGCGCGACGGTAAGCAGGTCA + IkG0SCH7TOH\@D?WDI:6/5KD>=8]BZ6;+5+15E\F/ITD47NL7>9KFe7;JA63=PROgW8CP3@YQ9O-[IOBG~OGR<0C/]:,1X]\)=Q5GFCA@[D=D;3BI:@AGE<,BG2fB*WWN%?=F^Q&4;DEo7jb@6[_YJ'0.6D/7Xe:.J.3~F?]A@baCCRlLJ^=0F@@L>86:8HC2=%1`P?NEK(@DT>8W;Fu8>?aN%C>GB8MSG7/>GV`;YKT--@cM=^kMK9UK/7:FB>?@FCQ5L-UcP('7AnX>NipHUY@(IN0^Ca=HsGFu@XH@ZP6VoWPM_.B.8Y^f]GO;M~bo?kGF]V16gsLIP~o~]l*kOMH?hU5CDnpOK~R:RF~H?JNM32;e~uGKGLH<-MQJH~~Kf~mdHsf~6;RHPGG~OV0YA~~';?KQ>J~^8QO@9,tA>LVKQ[J+E=[R:HCETKROS@@[OLXWNQrJ\?k@x~~~%VC@,Ua0yPNSM@kQTiaXbL5SP~W@p9:qaKhP`DCYhO~D_dQ-F)Zg7DPML<5V9O18T';5C;5-2[EC1I3GFZ5@BCV~-3V=BC8?EH7OEA>P*F*5>K%G6IKW:@.@SD52%C;-1KERQfW4>E?7(%HK=98:Y$Y:DG-2:?M@9@%H*Z&A0+;3+E@*,<^)-F+F0*7A>5HENBJ>M%%04J?<.)M?`=?BEC9O3C$G8+9O*9S[~~^^Y~8gSA5I~C,(pN~a_B4LQ7~0\dZJ@'99~J@]e@kOoxNJ8WN_aVcIl~AHA~U~XA=SaUj'V-P>~^VeG5QhK,>C\&J4KGXIHGK~Mh.D^iG1_=k~ZDF/~LDRYA$JFL@QPHO~>BCX4G]hQRf~Sm~BD&PZ~PeE[,S>9dvF0w\:A9[P[?L~29@H:b`i'Rn[TKVK?ObCJ=9Z @S1_39 CCATTGTGATTGGTATTTCGATGGCTGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACTTCATGCACGCCAGCCAGTTCCATCTGGGTAGTGAACGCCTATCAAATCGCCATTGTCATCTCCCTGCTCTCGTTTTCGTTTCTGGGCGATATGTTTGGCTATCGACGTATTTATAATATGCGGTCTGGTCGTTTTTCTGTTGTCTTCACTGTTCTGCGCCCTTTCTTGATTCGCTGAAATGCTCACCTTGCGCGTGTCATACAA + +ULK9GL6UX-?'=|8Q;64+\KF8;h>C4;]'$GHGIU@D:6\HE1@UKb]GHU4^3EP<6KL7:DXDR?BH7:L'm:GCD/<>GRRQ:Q>]WN82L/J4@+0.3BF6>EOC*KCQUP:)HTW0XG-C.r'VTGK7pHbHD%4C]gK:NjK>2EU'3:Y899A@U3JSP @S1_40 ACCATGCTTCTCAGAAAACGTCGCGCCGTCATCGGGTACGAAAGCGGCAGGTAGCGCGCTGCATGGTGATCGGGCGATAGAAGTTGGCATCGGCCCAGATATACACCACATGCGAGGCGATAAAGGCGATAAATAAGAATGCGGCCAGCGGGCGCGCGAAGCGCCGACGACGCTCAGGCTGCGCAGCTTTTGCCAGCTCCACGTCGCAAACACCAGTTCAAGCAATAAAATAACCGGCACGCTGATGAACATCAGCTGCCAGTCGCGCGCCATCTCATTTTCGTCTGGGTTGAACCAGTTGCCAGACGATGGGATTAAGATGGAGATGGAAACGAGTAAGACTTCGCTATCGATCAGTAATAGCGTCATTCCCGCCGTTCCAGAATGACGGACAAAAACCTCATCAGCCTCTGGAGCCGACGATAAAGTCAGCGGGAAGAGGATCAGCAAGTAGGTGGCGAACACCAGGAAGCTGAAATGGCCGATAATGCTTACGTAGGAATAAATGCGACCAGCAAGCGTTGTCGGCAGTCGGCGAAAACAGGTAACGGCGCCAATGACGAGCGAAAGCAGAATATT + NTQViUAQ~mFRUK4K0noPIg1TAJDi6`9DFI}s]sJ[_`~0MI4@s,T~OFS`XKJ]ijG>Aa?Q~SC_PLP-+4CtJe>,@~qcaGR[=Wr;H5JDY\.u:CXt4YO?L\B[Gm=k~_P8GJ&M?KNqjQO\Q:TVe5l~PiHrJR^FCA=HG=iSFEbMN1n~~tZtLj$d:BV;HTj[~:_8EC?[>]o[N^FJV^*cR*SK'vD6=9d;'QCEQ?^`XT:9-NBH?D;N-LW/G~:QeYJf=JkLGS=$qFnzQ8DNKLZMvE@A~5OaaWCY.85IJ&7C1~>U6OeAZNKSdHQNM`@?IAU:4\BO\Idb3]4v?rorGC~TI~H~QMHuB3Maqk_N|P~~= @S1_41 TATCCCTGCCAGCTCTGTTGCAGTAAATCCACCACTTGCGAACATTCTTCATCAACTGTCACACTGGCTCGCGATGGCAGAAAAGCTCCTGGCTGAACAGCAACAGGCATCGTATTGTTGCTCCTCCATGTTGTTCCCGCAACCAGCGTAATACCACCGGCGAGGATGGACTGGCCGTGTGATTACGCTCAGTAATACGTTCGTGCACCTGTCGGTAAAAGGAAGTACAGAATGCATGAATCTGTTGCCCGTTGATATCTTCCTTCTGCCGAATGGAGTGTGAAGTAAAATGCCAGCAAATGCGGCCAGTGGTCCACGCTGCTGAATAAAACGCCGGATGTCTCCCGCTCTGAAATTAATGCTTCGGTTATTTGCACGAAATGTTCCTTTTCAAACCCTGTTGAATTTTGTTCAGCCGGTGCAACACACGGGAAGGTGCGCATCAACACCGGTGTAATGCCAG + b~;~i_t~~psn^i^[~I~l&~gnUs~~E~~mm~02Dv~~~G`Zv~eE~Mxf~E/~i~~t}r~~Y~,bZmU={dL=OuM{~sGji~h~~KHY~;X;~ASBajJ~~C}~~~]VRh~~aUh8Ov]~fd~PX3@gY/Y3E~~tw~~~[{^~~w~~7~wUGNUO~\|?H~~2~^vKQj~pKMAxs~Zap~|g~~|~~\~~Cx~w._~R~tq~p{g~YpEyX~F~V~~D~d>~@~b~Q~~~^f~~G~xPl~~tY~srmV~Q~m,~IOe^~[T[~~:~~g~*~~tYkO}u~S/sM~Tn^O~lj~GKaf~~~jp~t~OSFU~~kxRgEV~hg{ @S1_42 AAGTCATTATCTCGACCGGCTCAAAACGTTGCAGGATCAGCTCTACAGCCGCGATTTGCCAACAGTCTCAAAGGCATTGAAATATACGGGCAACGTGGCGCTGCTGAAAGGGCGCTCAAACTACCTCTGCCTCGAGCGTCTCGAACAGCAGGCGCTGGCGGGGGGCGATCTGCCGGTACAAATCTTAAGCGATGTGATCCTCTGCGCTCCTGGTCTAATCAAACAGTCGATGTGATATCAGCACCTGCGTCAGCTGGCGGAAGATTCACAGGCGTGCCGCTGGTCACCAGCACCAACGACAACTGTCTGGCAGCACTGCCCGATGTATAAAGATTGCTTTGTGGTCAAAGCACGTAAAAAAGCGATGACGCCGATGTGGTGGTGTAAACCATCATCTCTTTCTGGCGGATATGGTGGTTAAAGAGAGTGGATTTGGCGAACTATCCCGGAAGCGGACGTCATGATCTTCGACGAAGCCCACCAGCTACCGGACATTGCCAGCCAGTATTTTGGTCAGTCAC + p~chf~XXt~EOJre~FIg~iz~8~Kw~I~Yhk~~~Y79~~~F~Xpcbi|J~[~~3~d~~AEU_~/GK;L~w~~HLZ[^r0k\GQ~I~I~yR~~t~~jv~ehK[RYV[cy~Q~~\~~U~~~e~~HWk~~~_SLn]NwwX~<(:~~`~]zV7cj~Ux,oUrgc~b~~uK^~~O~9~XPfdy~h@SO\zP|~~HF`[y]~~jbq~Da~Mu~uU|BG~>gGV~t~~j/KJ^~~yXY]L~~\Z~~^O~V|~~q~dMrUfsdu~ZF``dlp~\~5~da?<}l~OCix<~~leF~~P~HtT{~L~xO{@_kH~8{~~JR~+~VR7~O4~Fw~~]~\~~1~~m~~]c[;rq~^i~tY~r[`h~~9C~`~ib~L~U~~~7~;_~bzs~~PJ>_xr^f~E~[_9~onB3a~~C~Yy~[~oL~L`l~VV^~S~qrzvX@]~HOz,C~y~~TN~MHOi~g~UH/~htaD|US]Ld~MYYt~K~H~~V~ZLN~PZ{~~8]~iv~~~^x~}~ @S1_43 TTCATGGCGAAACTCTTCTTTGACGCGGTTAAAGCCGTTACCTTCCCGACCGAACATGTCTTTCTCGTCCAGTTCCACGTCGTCAAAGGTGTTTCACAGCAGCTATCCATACGCAGACCGAGCTTTTCAAGTTTGGTCACTTTGATGCCCGGTTGCTCATATCAACAAACCATTCGGTGTAGACAGGTTTTGTTCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTCTCAGGCTACCCACGTCGGAGCCCGCGCCCGGTTCGGTAATCGCTGAGTTCCACATCTGCTTACCGGTGCCGCGGAAAGCCATAATCTTGTCGATCTGCTCTTGTGTGCCTTCGCGCGGAAGGTGTTGA + ;?':8?**v>Dk=e5=@=%^A=<>0TgEBLO{@2HIEK+Y?FUOY?B;-T7DD[9%.7FF:K\KUD=NF@Hl=T-87\EJ9:>A4-6MU5L6(1Q9*K_PRB?5;*IKH>=YIM=SR\\J/G71.&N2+&:WCK?1.?SLO5bO]Ib-ZU/~RJB[KE)NaJiP=L]Q0MU8^2=51;H'BL>;?5E@/GD)9TSjEM/&BgGN.d_FGEG-HE9?>EyB%`?FX;D;96(H+JO'XO(+86EH04=VM=<.H.KCNF3%15z5U.E-VdCA3+?H7OB;/R?.9@a~%.=BHKJSP8[~5NPKR6;>k2K@;.WEYQEZ89MWe?K.vd-CK76U?W7>=:3J>'7941C??FH=oK@ @S1_44 CGTTCTTGAAACGTTGCCTAATACCATGTTCCGCGTAGAGTTAGAAAACGGTCACGTGGTTACTGCACACATCTCGGTAAAATGCGCAAAAACTACATCCGCATCCTGACGGGCGACAAAGTGACTGTTGAACTGACCCCGTACGACCTGAGCAAAGGCCGCATTGTCTTCCGTAGTCGCTGATTGTTTACGCCTGATGGCGAAGAGAAAGAACGAGTAAAAGGTCGGTTTAACCGGCCTTTTTATTTTGTGTATGTATGAAGTACTTTGGAAGTATAAGTCCGTAATTGTCTCGATTAGATATACTGCACAACTTGTTTACAGTATGAGCAAACAATAATTATCATTAAAATCTTCTTGCCGTTTTACTCCAACTCCCTATAGTAGCGCCCGTTGCCACCCATGAGGTCAGGCGACAAAACAATTTGGTGAGGTGTCCGAGTGGCTG + L~z~]~~~~O=~k~Jx~R+~W7~;UxMin~eiY~N|wHXZFIZx~T;~U~snzn_~~oNWAb~`X~~~{~1~>FO~IUuM~O~mlERTecnY~C~G~[~kUv?D~V~{YS~~Q]j~T~(~JZ-~ci~Utjoy~wlc}KB~b~~w@2J[~~~~Tsf}~H~gb;~Z}c~Isv~([PbcRpm~j\em~}Q~~~@G4s?C7;9/8UEGEg'[/JM~CSK*1237Wa4(]FZ283GB%C.\AA3FBY]uLG>5MD?dRGpMCW7N>4FMK&ICBQ+j)p;/^';$E+d>I^AC2&HDE597E8,)?1=@A%Y>(5>b8aH=?M@XR*8,H59.UUI=PJcM[:,<<=L-H[T+f9K:'+'F;FD3E-5Q.@7?~A+WNI>0YEDURFB5HB0;+zAj,~/3O<[01k}YfL=U9YK?QCG@}+M?*D>0XBH~3D0;UA4Q3X~?O'4]DP=C5@98;HL4A<4G7I\+.@69;E&@FEKA<'+AEKB?TAAHKbV @S1_46 GTTCAAACGATTCGGCAATCACCACACGAATTCCAAGCAGACGAGGACCTTTTGCCGCCCCAGTCACGGCTTGAGCCTGATCCATCTCTTTCCCGGCAATCACCGCCAGCGGGTTTGTTCCTGCTTATAGCGCATGCAGCATCATAAATAAGACTACGTCGCTGTAGGTAAATGCCCGCGTCATCCCCCCTTCAACGCCAGGCACCATTTCATTACGGATGCGAATATTGGCGAAGGTGCCGCGCATCATCACTTCATGGTTACCACGCCGCGAACCGTAGGAGTTAAAGTCTTTTCGCTCAACACCCCGACCTTTAGATATCGACCCGCTGGGCTGTCGGGCTTAATACTGCCCGCCGGAGAGATATGGTCAGTGGTGACTGAATCCCCCAGATTGCG + ?~P;-mBV]_)lHPxaC-bj~Pbsd2^L~`K=^~2NP0h@PReUd\G3MjyL2Z/mMc(KPLE~77;W<\TZBHB04FmR3N5d1bb;bR~6J@Cs~BFK4ZJ~Ly~QhdLv~R[0-<~f^xyk9z^etb~~LGWr~S8f4D\3S6mU~eJLK-CRZ^3SO`BY5VBe=6U~J)2\8XEkLLCT>R9p~~;?[:pOalDZ~VY5WLeN5hEB~EksE)@OQ]UG`TF1K@Y8'ANY.AH;E+GNDFaj/c;W\F.9I99(.6EA(-:CC9.3*/;@:5P:4F3F@356G@8G-,=03&)-;):84,/P3-2@ @S1_48 TACGCCATCTGCCCATGCCGCGTATGACCAACACCTATATGCTGCCGGGTAAATCGACCCCGCAGGAAATTATTGAACCGTTGAGTACGGATCTATGCACCGAACTTTGGTGGCGGTCAGGTGGATATTACATCCGGCAAATTCGTTTTCTCCACTTCAGAAGCGTATCTGATTGAAAACGGTAAAGTAACGAAGCCGGTGAAAGGCCGACGTTGATTGTTCCGGTATCGAACCATGCAGCAGATTTCGATGGTTGGCAACGACCTGAAACTGGATAACGGCGTGGGTGTCT + Mm~.3XkK~@(lZ=~=ZE-ICZwzgW1n=dG@\D~c~R>sP?L=9KIQMKX`gBHWsL>e@S`~TMKQ)X9QTTLL_R~z~FYOU.jN>.~KE`4y>P;~rD=MUXy1=U~o~G3Q7z`EZ_N^>SG8fP1[QBqmVOzP7V6/~=E4h/J?PV~]~~_]^w~^~s~~~jMH~}LZ~Ld~~~yx~Iy~~~T?d~dq~}X~j~i@=P:>>9D^4,;JF:>QLO\-,LSM/=E3XIQnE6>ECE2;7.G(?4=Q.X?GI=-~;I(\&&:DbTT6R(59:=I(A2O>CZB74C7C.=<5JET.OO?(:<,(9A.,&JAJ9 @S1_51 TATGGAATCAGGTGAACGAGAGCCATAGCCGCGCATCCGATATCTGGCGCGAAGTGCCTCGCTGTTTCGCCCACCCAGCCGGTTACCAGTACGGAAGCCATCAGGCGTTTATGCGGGTACCACGGGGAGCCAATACTCCGGTCCGTGGGAGCATCGCTGACGCCCTATATGATTGACCCCATTAATACATTATCAGCCCGTGAATATGACG + ~`v~N\Wn~~e~aOPz~crO~~lhiir]/~~~~Z}A|~aN~w)~uPbtb~q`kD~+^RI_~>Kv`vh~r{4JX5F~2mkdX~~t~gtF~~VdtQ~~~Z~c~xq=|h~g.U~BHk~~~?'ht<~OVY~Fb~ZaR}g}JQJ~i=7v]jVF]<_~F~~aK~Xqk`~~?+b-Rq~~b~E~;L{bR8^\~Zl~Ssal~~U~~~~~6reeHp~Mkys @S1_52 GTGCGGACTCTTTTCCTTCAGCCCAGGCGGCAAGGTATAAGCAACTGTCTATTGCTGTGCGTCGACCAACACCGTACAGGCACCACATTCACCCACGCAGCACCCTTGTTTGACACTTAGCAGTCCTTGTTCGCGGAGTAATTCCGAGAGCGGCGTGCCTGGTGCGGCGTGAAGCTGAAAAGCATCCCGTTAATGGTGCATTCGATGGTAATTGTCTCGCTGTGATTCATTGCAATTTCGCCCCGCCGCGGCGACGGCTTCGCTAATCACTTTTTTGGTCATCGTCTGGATGGATGCAGACGAAACTCTTTACTGGCCCGCCATGAAGAACGCGGGGCGACATCTTGCAGGACAGATTCGCTGATAGCTTCCAGCGTTTGCAGGTTTAATGGCGCATTTTGTGCAGTCTGTTCGGCATGTTGGCAGCGAATCGGCGTTGGCGCGGCAACACCAAATGCCAGCGTAATTCGCTGAAATTGCCGTTATCCAGTCGGCAATGTGCGG + `v0~~~FRi.SFG~G~\U.^/^DOM?k`06Wf^[bKFi~spB@~~TsHzX6~5J=RV`)ZSH='1~L8PK'6J@1IRYNM,T:9~/JEfK]4Pz6TURKj~L~6I^>Y7[8:C~C~.J+SR`Y2HaH~Dfh~~N62?,_F^T=^S=]FUMw;>R@TEVCFJhF4D:;P=vRy>`GcYd7B@_KLDH`F~*I7k^>9q4Hd]XJy7bJcRA/e~=~%S\0CLLICB7I1OIsH@_9IVAFM~>.vPNBAx~XdJV]I^5M~N2.LQvj9:;U7HH_Ul&lN[?Bhi~?CdI~C<]]]VBla:~_:~TF~CW)H~hgguKXM{PGQKD\gL,YX_Ie[[9X~NIG;>;[hDF%?oG`DXL64>NM~TAWC @S1_53 TCGGTGCGGGAACATCCGGTCGTCTGGGGATTCTGGATGCCAGCGAATGTCCGCCCACCTACGGCGTGAAACCGGGTCTGGTGGTTGGTTTGATTGCTGGAGGCGAATATGCCATTCAGCACGCGGTGGAAGGCGCTGAAGATAGCCGGAAGGTGGTGTTAACGATCTGAAAAATATTAATTTAACGGCACAGGATGTGGTGGTTGGCATTGCTGCCAGCGGTCGCACGCCGTATGTGATTGCCGGACTGGAATACGCACGCCAGCTCGGCTGCCGCACAGTGGGAATTTCCTGTAATCCGGGGAGTGCCGTTTCCACCACCGCCGAGTTTGCCATTACACCGATTGTAGGTGCCGAAGTGGTCACTGGTTCTTCGCGAATGAAACAGGCACAGCGCAGAAACTGGTGCTCAATATGCTTTCCACC + wTYg}]D~i~mH5w~~~7~~eWVpPR}`-~Yb~`~u~~s2z~~~nzlh~IX~P\hc]~s]~~~~YeL~Qnxzfq\~-yT~q[a~e~Q~~~Kfj~/rLMP`jw9~OLk~sn~L~~~D~~~^n~~~qvb~~`~X3~7'~Z~W~fRl[~wB~mSS`=?~~UVUzO[f~Jfxhe~G~~y1~VDvsF~~N~jy~~~x~~Cg~[~P~r[hY~iQ:_~xjhLfNe~LQqr~K~~F~~EsSe?oQ\~9~_fQ~xf~B].B~tv~=u~~i~S~[B>[dv^J*~JyguU\~Vdez;Z~eB^~~tf@gYM~~p~~L~Hy_a~~}O][7f~hZ~O?]e~~~F~~f]aw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fj9/_XZiO9@~~L~~>a8l'W[HjC4's@E[ejD~%-)T~UU+~B~5A1[ADAu9TnzH~=Fr)Gn_6U.0>XfoX_~vPHnQVNZ>FTD*NHx?]N~i4^UD5J;_okG6>?WiJD,`V0O5KJE:s&[~LD~RKnD'\Y7yU`M'0>NZB~N\5Pk~QQZ\RYB[AB\~XhT~S,~WA<*@pO~~,NZC`G~C_A~~A[XtO?me~RK~LL~Fz*2FHh*9B~TGMBHn_HOH-UM>@QRE2DM/~-7:*N^NT@mVi`>i7L@JY[FV~U~(u61So<]sIKH~H~E~JPa@[\X17\Z0DFdz:SN)M=xnF~R^YoH168DPRZTYH~LI+@DC\imaQJ>>$S~iJ&F~IXGNGepH_@V=d-y8^DO3dkTY~FS}DA7RFmY>8xAFoU@YG:OeL~q~R=W>@=9Q:A5O6NJ~IH&~~@G.6SkRSK@lVn0Sb=6W;>8BJQ~d|~NVyRH(8?DJHQB~6.Rq@IPJDGI\VF>A'\p|~A~4<~ORNNATQQ7L=D><1?KE?C^4~SSE~_wcJDVRUOHoK>EV??d&K~FH~.=pV`=C>h0V8I3)0.1(',3+H%1@413'%3*67@:)A31=0//,(+9*?-0>8,(-:7/)5%<-,E232$:./)O2/9'-0A3)+82.:,3068(,76=+%5F;)F75&;-28+7-G37:*+3?$83&:/-;',L,57+7=A*4)+,1)J5/4*6HF*&968A'.A.%G"',>>;7A:>7-)>2=07+'83&1.,617@3$(=+%%B,;)$2-+&3%(:(=.278*.3@,(,0.2<.;(2-1&6'1*(5%4<9(31-C'444*&E'+7A.++*6,,12 @S1_58 GCCCCATTTATCTTCGGTTTCGCCAGTGAAGAGGCCGAGAAGGCTTGCTGAATGGTTTGGTAACCGGGCCACAACGGCCTTCGCCAACCTGAATACCATCTACACTGCGCACTGGGTGATTTCGCCGCAGTACCGGACATAACACTTCATCCGCCAGGTACGGGATTCGCGCGACAGAACCTGCTCACGCACTTCAATTCCCAGCTCTTTGCCAGTTTGATGATGGCATCACGGGTAATACCCGGCAGCGCGGAGGAGGTGAACGGTGGGGTGAACAGCACACCATCTTTCACTTCAAACAGGTTTTCGCCTGCGCCTTCAGAGATATAACCGTTCCATCAGCGCGATACCTTCCTGATAACCGTGGCGGCGCGCTTCGCTACCCACCGCAGGGAAGAGAGATAGTTACCACCGGCTTTTGCCGCGGTTGGGATGTGTTTGGTGCTGCGCGGTTCCAGGAGGAAACCATCGCATCGATCCCCTGCTCCAGCGCTTCTGGCCCAGATACGCTCCCCACGGGA + ~i/w~M}UGm~~/~oUC~j~B[pPK~~0L~J~i~_8G~b~fY|~vjWV~LS[rL27uW~fx~Y~g~UOn~bu~AX\^r`Wmx`~~b~OgjzEU~~~a~~~k~[S~w]FP~MkMqb~~G~fbvq|INMn?zisot~YROdQ~u~~NJ|~]X~HRMUDM|?GXvUJ~C~`ggP<~=C@YQK5yJ=-~_lMK=~_~~M~VH~=~]aIYP~Sm`?T~~7e?obSv[a^~]WOi~UZ1|S[{O]O_ORBFUn~~~QQ=as~~{MTnQ\p|^|[\3Y~Rn~G~GDb~Cb~j~~6Qy=~~bEnooz~r~vrWci~os~Y_~~_~^M~{;~t~A~RO2dKAcb~~F8WN~rp~g~[~~8W~~~_~``@b~/VTc5~Z?Vkyx~aE]~~9o0p\}~~>[~U~~mN?\~Mb.~~y[Sn~~;l@~@bm3N_H9x?~~8~W~~hpaZ~l[Y~~^k~~tHla[}m_C`=:cs[~Ysnj~Z25w0~+Y~(~~YYA~wf~1X~Q~~~~amhD~jHUX3Uux:X`H`g}3~n~,S~~~~|RFJ[~{T,~V;G~~c?-~n~~g.eh5VK~~~B~~PjPfW~k\@OQkV+[~g~?UN[WgV~D~1~{+I~Sc~~n}~nN.[Xuq9}~R~Gh?:r~~Qaw^V~q~a~oIek~osnGx*~z~~Hy~j`n~~~~>~d~-[UJpp~FKaSrbPS~A_x~~4D^~\d^Ni~~wt7ELY~EM @S1_62 AGATTTCTCTATCCACTACAACAAATTCAGCCTGCGTGATCCCATCCTGCACGGAGCAATAGATGTATCCGTAATGCATTTTGAAAAAGTATTGTTACAGCCAGATACAGCGCAGAACGATAAAATGGCACAATCCAACAACAATTTTACATTTTCCGACCGCTTTGGCTGCTTTCAGGTCGTTTCAATGATATACTGCCGTCGTTAATTCAAAAATATTGAATAATTAAACAATCTATTGAATTGAAACGCTTTCCTTCTAATTCGCAACTGGAACACGCAGCTATGAGTAAACCCATTGTGATGGAACGCGGTGTTAATACCGCGATGCCGATAAGATGGCCCTTATCCGGTTAAAAACGTGGCAACAGAGCGCGAAGCCCTGCTGCGCAAGCCGGAATGGATGAAAATCAAGCTTCCAGCGGACTCTACACGTATCCAGGGCATCAAAGCCGCAATGCGCAAAAATGGCCTGCATTCTGTCTGCGAGGAAGCCTCCTGCCCTAACCTGGCGGAATGCTTCAACCACGGCACAGCAACGTTTATGATCCTCGGCGCTATTTGTACCCGCCGTTGTCCGTACTGTGATGTTGCCCCGGCGCCGGTAGCTCCTGATGCCAATGAACCAGTGAAACTGGCGCGACCATTGCCGATATGGCGCTGCGTTATGTGGTTATCACCTCCGTTGACCGTGATGACCTGCGCGATGGCGGGCCCAGCACTTTGCGGATTGCATTACTGCCATTCGGGAAAAAAGCCCGCAAATCAAAATTGAAACTCTGGTGCCGGATTTCCGTGGTCGTATGGATCGTGCTCTGGATATTCGACTGCAACGCCACCAGATGTGTTCAACCATAACCTGGAAAACGTACCGCGTATTTACCGTCAGGTACGGCCTGGTGCAGATTACAACTGTCGCTGAAGCTGCTGGAACGCTTTAAGAAGCGCATCCGGAAATCCCGACA + :P%M&wU>IG_Cbi(TCG_b~~9mDFkHSOAK`~t`qO~BSJB/@~WPGH&%*9S-=JJN}IyZ3f9~)g~D??GM>~[C1\&4RTkM]A~GGn`KItIJ\.\X~06xaPyh~WVO?M[YKW_cNN>p5E~f3Jj+Z~PP]_VAGsjsKgX~6UvV~A%B~~V28;he:G.TeZjpRIa]>7HD]BWGPXW=S~~J8P?~T~SHH8AXP&GK8^MR]4x~^AmD>R]/2X.XGF,]M%G~^K8mqT8TZ+A8C7:?YTBL@*6D3m(QTH@DfHr[Z%~2`A>,3F~MX~yp~_tbDwEUCBxfGd>`P}hB<_(~f~KL}1-VP~HQjJ9iI/G`RS?dN./Id1GEbPa[Te)gL7GBAOhWB<6iMFV~4I/UL8x~XYW~iULEKeEEV9cYNLaT?G-G~[\GEGAJinUYCSTM/~OE^m?T\OH%Q^A}kj_~l=c@r+:rE_1HLR[<8WNj8lRITP+:Ga3}~TpQF*KXNN_~b96VbTLVK^~_A*rEOZAL~7]DnmZF1JBiBHL,ZVHiF4SDi;WFRTOQK>RC0@V7GtYV~iGY;LN?QbQ4Xq9>MWMtR_T_D&{GT\EQ[~'\Y4:nB~`NBN>`Teqo^ELfiJDKTsS:TO:iHRW[>PHYe^qoLX@Y[ZE?yPmv~fsLV~T^~{rkOMY~,[rgFuvY}kKDj~~S~Zc~~fH~~~]D~e~~~eK}=o~k?~vqbG~\f3EPTS~^mbR~~[ba~~~U~^~~qd~`xc^s{i~~on~~~Ajb @S1_64 TACTGGTTTATGCCCTGATAATGCGGAGGCGTTTCTGATGGCTGCGCAAGGGTTCTTACTGATCCGCCACGTTTTTACTGGTGTTAATGGTGCTGGCGCGTCCTTTAGGCCAGCGGGCTGGCGCGGCTGATTAATGACATTCCTCTTCCAGGTACAGCGGGCGTTGAACGTATACTCTTCGTTTCCTGGCGTTCTGACCATGAGATGAACTGGAAGCAATATCTTTTGTGCCATTCTCGGCCTGAACATGCTGGGGCTGGCGGTGCTGTTTTTTTATGTTGGCTCGGTCAGCACTATCTGCCGCTTAATCCACAGCAGTTGCCGGGGCTGTCGTGGATCTGGCGCTGAATACCGCGTCAGCTTTGTCACGAATACCAACTGGCAATCTTACAGC + *:3A*(.1>3*(6G7.<3@1G63,>.'G292<'N*-TB7$;H/:)*50)?C>D'I90O658:'39-:8AC13?2N;6+H:F7'?:@0<>8&%))35'>?C8BU%*?44G(?@::7J199BE3CN/,+(GF>-6>[:54@1/7DDD)9+6)M1/9'8?-:5E041S4=,95/C>)69SA65F-@I@:57B$=5('8D.-%9<&+)I4345(/0(.19)>(;C @S1_65 TGGTTTCTTCATCCTCAGTAGGCTGTCGTTATTTGTTAGTGTAATGTTATGGCTATTACGCATATTTTGATCCTGTTACTTTGACGAACCGGGCATGGAAACCCGGTGGTGTCTCAGGATTGATAATATCGTTCTGTCTCAACAGATCTAATAATTGCTGTACCAAATTTGTTACTAATTGTTCACCATTAGATGAATTTCTGCCGATTCAGGCGCTTCGTAAACGGAATCTATTCCCGTAAAGTTGCGCAGTTCACCGCACGCGCTTTCTTATATAAGCCTTTTGGATCGCGGGCTTCGCAAATCGCCAGCGGCGTATCGACAAACACTTCGATAAAGCGCCCTCTCT + I5M`13D3IIEGB.M1F=1:D2'L$5M;0=M[G3<=A@OI79>E(34OG>4024?0?H.$FJ2=5C>O2R2>5EFLUd4D%%935QQIC(7RM(SCDV)QM4;C=D=;14A24a;(OL8*PC>53;TR9`JG3G:3Y:B.BH8:G5K1;(<<.>F9J/n)22\DG?+:BCL](/JFC/U+2O?M;I32<3ICWHL3KUB9/F2(FPE>'\6H @S1_66 ATAGCTGGAGGAAATTATTATACTCTTAAGGATAAGTCATGAATATAAAGACGCTAACGTCAGCCTTTTGTCTTTTTCTATTATTACAGCATTGTTTCCTTGAACGCGAGGCAACAAAATTAACCATAGAGCAGCGCCTTGAATTGCTTGAAAATGAATTGTCGCAAAATAAACAAGAGCTGAAAGCAACACAGATGAACTGGGAGTATATAAATCCCGACTTTCGACCTACAAAAAAGCATCACGGAAAACAAATATAAATCAGCCTCGCTTGCTGAAATATCAGCGCATCTCCCGTCGCTGATAACATCAAAAATGAAAACGGTGAACA + SfDKBDIet&;Ne,X7>~KZKBLw2jDP@~c^NQ9QMAFG~>jN@NUL:`jS'C=ek>-3*:HcN3b>lKRnLC_dua?/IPMe~KPbO?~AHG`m:@d~Z0ljGEF~1R^M1>AaGOPTLORPR)5KBsJ~Y~N&Di[35JArF@XJ^s~s5AJHB@fQj?>y%E.ByHNBO~;>QBMZW^xL~MH;~CR=?Ng?OT>K~J[~H%=~PYgd\~/cW(>4(`BEOO9k~OIENFAkF;cSiDG@~J_F9YJ:JJMWwUMjgTqD{89~'WPjYU3W^Q~n>H^UOy@JOK~E*jFY[NV\7oAb=/8xTfNO=>7[72gGOOIPF^<^}P:a6IAD;H{aT~]E*ck{SG*f0D_`E.:@W5~Z7LPa+TcRHdD7~JeSf@d6FGDHI;U`BC:5_ISb~2-1n/vRM\7BXwG\~I1HBIkQZ~GJHXu3]~:D\.l;M~97T?gRUqXoBN7~>=2Ti~HBW@RF$J>MHGSZSI?sBoMAGE{BN~l-Z~D*7H?H?Os\2t0:3;0J @S1_68 GCAACAGTTGGACGACACAGAAATCCGGGCCCGTGTTGATCCTGAATGATGCCTTTGGTGCGTTAAGCTGCGCGCTGGCGGAACATAAGCCGTACAGCATTGGCGACTCATACATCAGTGAACTGGCGACGCGCGAGATTTACGCCTCAACGGGATTGATGAGTCGAGCGTGAAGTTTCTCGACAGCACCGCCGACTACCCGCAACAGCCGGGTGTGGTGCTGATCAAAGTGCCGAAAACACTGGCATTGCTGGAACAGCAACTGCGTGCGCTGCGCAAAGTGGTCACGTCGGATACACGTATTATTGCCGGTGCCAAAGCCCGTGACATTCACACTTCCACGCTGGAGCTGTTCGAGAAGTGCTCGGCCCGACCACCACTACGCTGGCATGGAAAAAAGCGCGCCTGATTAATTGCACTTTCAATGAACCGCCGTGGCCGATGCGCGCAGACCGTTAGC + R~~ubQ(;~v~~g:Dh~~j41~Kb|I~~yK|{~kV~jV~U}v>~|~Mct}ev^u98ms~~~^vRz|F~~~Oaf8Z~~j[^M~~oL~^hb>d~d~uL~MU][LA;B-bAJ$D;~2KHdEP@>UWHU_'HT~GH>OV>@SF8OXDMKKR?_4MY[h,%Ra5lKM~VZSRynsaGA/QZ>gV~V3U)VG*si8_~D[T~~mUiMGw\8;IE~'~TgDU:HGa>=>;NVMUMsELMlMe]jnM,/ZzA(I:UKXM>~OJ5J]SDa_NU>CEa:PP=xK;}QEA~[\pG{$LF^(WN`8fZ8lK~G~x~42xFIpCfCq;>qVBEGVPiM-OUrXT~DO~5CSKJLK>_E5Yx]}~2B7-5MW/Nj~TkC_A^<<=>BSi~ @S1_70 TGCACCCGGATGCGCAGACAGAGGTGATCCACTTCGGTGACGTCCAGGCGGCGTTGATATTTGATAAAACACTGCCCGTTAACAGCTCGTCCGGTATGAGTGACAGTGGCACAGATCAGTATGGGCATTGAATGTGGAGAACCGGGTGGTGTAAAGCCGTGTTATCACGAACGACTATAACCACCGCGAGGCCCAGAACATACTGATGTCCGTACCGGCGGACATGACCCTGGAGAAGGTTACGACACCAGTTA + 7FH&>:FAMM'9XB5?+E?H$&88@5EEB<;V0E=3-2J=*9M?e.*A8.OM/31F>;VBN9@@*)H15-DL=):f1^@'-C@$BEBA4?G:=AB9K4-XPH*J)[/D-=;:*G<';.~87_O+YA?*;5Ed;8DE93Gi2D:6L1JJA;HE[9-GA,1GY>B@O]`@KKA~_B~XW~$N>~iS9^G4PHY:71yVG~27}?@CE4I/m0X>;Dye-^U5Nd~EmT~?@~/r~D;A5RD~FYp?ZO'K@UAK7?`~PZvaIZWE[eDc1E_7~EEHi/f1Y/ON~~?LPW)7H7^>SG,SV/D@@I~:Y~G<0PI98>8V2TAaWGYC:GKCM6:C5:Q-:>O?D@$/28h:@O7ILAC%,4U2M1I:?QLKDB-*8@3>J0JA78AdKbe0BQ9E:9TL+E?F>SwG8Bv9f~+58C1_A@)9FISW]$FF@.9jCBNOTQTf[3JII8J3N'[EH\7B1e+[)K7ZD;%=/5J%K<&=E*VI,/E*>PDUMd/0H<%3H'VM6D.95/GN2ROF:F8KD81(M;BJ;E^l12=]AbXU2>KewK:=HD>3OD5U5JDCEQRKb4GNATGGEI[Z=4Gj+qASCI'(JZD7K=^pCXM;+J\o_57^F@/~)JKLGL41Z6HLF@DEL6NS7K9 @S1_73 GCTTCAACACCCACGTTCGCCAGACCTGCCGGGCAAGCTGATAAATATCCGCCAATACTTATCCCATGCTGAATGAAAGCTGCACTTGCTTTAGCGTCTACTGCCATAAACGCCTCGCGAACCTCCACCCCACTTCGAACGCGCGTGGACCAATTGCCGGCCCTAACCAGCGGATATTTTCCGGATTATCACAAAACAGGAAACCGTCTCTTCCAGCACGCCTGCGCACAGTCCACGCCAGCCAGCATGAGCGGCGGCGACTTCGTTCCCACTCGATTGCAAAACAGCACAGGG + bg%HT9Su[M7S0kQ@@~;L)=H?L~[q4@Gna3~G?@~x\3=NWL]oIT-JNJGXF-PK~U(`ZZgtzcPFSKg>nAeBRjI-@_[DO~L>Q=Y>oM5O~FkQaH`FFQEtH\~F;FGHBQSe]@$TKh4IoX~F_IZ3~~[-JF5SZ<~Y\AMJ><]V]P^T;Y}VcE[LEHN^]D(7M[cq~~C89%MS@=;ISf^G8Je:O~U~CU/M'RF~OGcH2A~E;gK^F:49GB5(DAj^~spd2pI8Y\N6D9 @S1_74 TGGATCAGATCGCGGAACTGTTGCGTATTCTTGGTAGCGCCGATCGTTTGAGGAAGTGATCGTGAAGAGCTGGAGCTGGTCGTGAACAGTTCGGTGACAAACGTCGTACTGAAATCACCGCCAACACCAGACATTAACCTGGAAGATCTGATCACTCAGGAAGGATGTGGTAGTGACGCTCTCTCACCAGGGCTACGTTAAGTATCAGCCGCTTTCTAATACGAAGCGCAGCGTCGGGCGGGAAAGGTAAATCTGCCGCACGTATTAAAGAAGAAGACTTTATCGACCGACTCTGGTGGCGAACACTCACGACCATATTCTGTGCTTCTCCAGCCGTGGTCGCGTCTATTCGATGAAAGTTTATCAGTTGCCGGAAGCCACTCGTGGCGCGCGCGGTCGTCCGATCGTCAACCTGCTGCCGCTGGAGCAGGACGAACGTATCACTGCGATC + b\~/lW67(8~]O7>shV.f?~+@>.MWd,PS_NVDiK9kS1BbuMYK5K@-JBBF+M[hO>6~I]A@p62K;F>cQT?W'_5e~LP7iYBNo;EaUHkKX-IVMA~[Q|~_YcAE~cKb;J~`D~OwH0.*h;G%J/J~~4IFpXYQ:g'D~~bA~Bq1/|4o4;TO?~:<4QPZxw>/^?3ZxkXUjPYs;MMAW1Lk1E*poBRbtaQV\V~U=X>)qow-/5CZ;LP~cBfGAGm9jIMQ_M9zi0X\XR_[X_HPyUM[oBb7WV~M_K]MVl5LW`oB+UZI1/z~HHIAGp3\Nbs~>UJh<@~f\md^|HW99P31k>s)KpQl^FSWPJparQ4^DIX~MC3VPpIH3CI@o|3E~H~NOQ~Icb74:b,FbiZD\1Yc0.^~[f~XuV9I:5dXTw_^INc;EL @S1_75 TATTGTTCAACGCAGTTCCAAGCATCGCCATTCGTTCGCCCGCTGATGTTTGCGCGTTGGGTAAAATCGCGATGGCTGAGGCACTCGCCATTGCCAGCAGTTGCCGCCACGGTTGTAGCAGTCGCGCCCGCAACCAGATAATAGTGAACACCAGTAAAAGTGCCATAAATACCGCCATTACCCGTGGACCAGTCCACTGTCTCGATGCGCATTTCCGTGGTGCGGTCAAAACCAGTACCAGCTGATCTAAGCCCGGCAACAAACTGGCTGACATCCGCTGACACCGTTTCTCGGTTTTTGTGCACGCTCAGCGCCAGGGATCAGTTCATACGCCAGTAATCTTGTAAACCCTGTAATTGCGCCAGTTGTCCTGTCTCGTTCTGCTGCTCGAGTCAACTCGCGCGCTAAATGCCGTTTGTTCCACTCTTTAATTAAGGGCTTGTCTTTCTCGCTTAATGGCACTGCCGCCAACAGACGGTAACTTTGCATGCGCAGCGA + 576L?G1=4KB47?9,\E8=F7=/:U=1EEB:357P*<956/=AD'G@H.3==EF%D42<+eX82332DC>-I/D?.;4RA;:>?7;Z@B2P:&:=J>6;AFD@;3-?<8I>U2,>@?=23J,FF>4A->-I7H9H-<:?L61I<67-RN7.B9a<$0.-G5R./5&3K;NEF*=37N86ID<;19)1>.479/<=<;I6UB.ACA\-?898/%Q57P>R,H5=(G.<6UM1>&R6?P;33$?:O;H2960;-=',50>A+;U?:H%,E95*9$:5;2>M=D8B3:E?>72BH-34%46BEBG/@19/;$&+D9D(I<>:JJ-BW9X`A6B8+9>DB$K.%N0D4$D/:4A3+C%*0L%G2B14,J%IEL(FC3;)00/>;FL?=G?BC@358+4-F@1J,J*:0-B7R3* @S1_76 GGCGGCACGGACGGCGGAGCGGTGCATTTAACCGGCACCGGCTGCCCACGGTGGTGATGGGGCCAGCGACGCGCCACGGACATTGTGCGGCATCGATTGGCCGATGCCGCGACATTTTGCAGATGCAGCAACTTTTATCTGCCCTTATTCAACGTCTTACCCGTGAGACGGTTGTTTCAACTGACGGATTTCAGATGATCTCCTGATTAACCCGGAACGGTTATGTTAACGATTCAATTTCTCGTCCTTTGCCTAACGGTCTGCATGCTCGTCCGGCGTGGGAACTTAAAGAACAGTGCAG + 9781M@=,.CK><6665&21.I.;19O1/>4GO$(4I'/<=%*,6::>;CIA,A/=>3GR)>~Adb?HE8SI(H4@AJ<.01[?3TK6axURB%*0G6Nn4:Oxh-@-6=S46cO[,P\2~;E'Q<`:{Q1W;M\Z1IEY9@DCDm3/OLL>FGGB+QT?F<97*D0DD'?1A;H=9PA?B @S1_78 ATGCCATCATTCTTGCGTAGCCGGACTAAAACGTTTAGGTCTGAGTCCCGCATTCGCGCCGCGTTACCACCCGAGATTTCTCTTCCGGCGGTAGGACAAGGTGCAGTCGGTATTGAATGCCGCCTTGATGATACGCGCACTCGCGAGCTGCTTGCCGCGCTGAATCACCACGAAACTGCACTGCGCGTTACCGCAGAACGCGCCATGAATACCCGTCTCGAAGGTGGATGTAGGGCCAATTGGTAGCTACGCCGAGCTTATTGATGGTGAAATCTGGCTCGTGCGCTGGTCGGCGCGCCGGACGGTTCGCAGA + ~fu~.~nVH5~~[d~_ks~CFlU~~~y~K~~~~~n~u~~>6~liag~~a~+X{U~p~wX=N1~GsH~P~R;~~q1`~~~Q[ @S1_79 AACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGTTGCGCTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTCCGGCCGCGATAGCTGCGCACTGCATTAAGTGCCGTTTGCAGGAAAAACTGGTTACTGACGCCTGGAATCTCCACCGGATACTGGAAGGCCATAAAGATGCCTTCGCCTGCACGATCTTCCGGCGACAGTGCAAGCAAATCTTTGCCTTTGAACTCAACCGTGCCGCCCGTCACTTCATAATCTTCGCGCCCGGCAAGCGTTGCCGATAAGGTACTTTTGCCGAACCGTTTGGCCCCATAATGGCTGAACTTCGCCGGGCGAACGGCGAGGCTTAATCCACGCAGGATAGCTTTATCTTCCACGCTGACGTGTAAATCTTTAATACTTAACATGTTTATTCCTTATCCGACGCTGTGTTCAAGACTGATGGCGAGGAGTTTTTGTGCTTCAACGGCAAATTCCAGCGGCAGTTCGAGAACACGTCTTTGAGAAACCGTTAACAATCATCGAGATGGCGTCTTCTTCGCTGATCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCCTCGTGCTCCAGTTGTGCGCTGTTATTGCGACATTCGACATACGGGAAGGTATGCGCCCCACAATAGCGCCAATCAGCATTGAGTCGCACTAGTGAAATTGCGCCATTGGTTGCCGTCGGCATGATTTTCACTAAGCCGCGATAACTGTTCTGACTATGTCCGGCAGAGATCCCTTTCGAGATAATGGTCGATTTGTGTTTTTACCGATGTGGATCATCTTGGTGCCGGTATCCGCTTGCTGATGACCGCTGGTCAGCGCCACTGAGTAAACTCAC + f~~I~T~ymS~|~E~~KcXA~~~_ok]c~`VP5SH~jFb~H+h~~Nd~B~Mm~qV~~vpUm~JypQ6zYe~~H~2xT~vGuqeb~jHzF~~zK~@k>EK_[~FgsHDw~j~`@P~~~~Qtb~7]~F~~R~'oaF3*U~x~aMPUK~~yk9T~~X<~b~pbWq~~gohjf~Zy>n}.Ejd`ZgCW~~~~b]J~~~MMfz}~n.G`[rNQAwuNCihycV_vbmZ~Qj?fJm~hZ>zcz~ylg8~qm~&~/_]c~}Z~~LJ~iC_~~72_~e~Hi_i3Gi~Iy~p\q{7Y~NOD>]~-`~_;K<~yQfe\~~i^~=iSjmoFj~RpE~]Ww~E~q~e~Z}J~|yNphf~~~I~V~F~~7N~|~~g>t~~~^~k~QiKh~~S~~H&pT~G=~~~X~~^Ee.~s~[b~~qVoYlVOzVn}~|~hzT~KR~;}~~;X~gDq~_G~}a~[}c~qCn~l~`g~ZlV~K[GIq,~_L~>~2~~~Jm;4@~ozW~g`D~~9@FNc~}~~XzhZud4~~~p~lGi~~~~rU~wG~~opVIbr~~~bF~~C\l~~c~g~~fi~eG~D~e|,sB^`~Vr~~Z~Evg~~Qf~~~Si~I`2y~gzOo3^Z@~~~;~~f~~WPM~~~~c~~~sud=:wa~~j~lin]RVrQ&~dMf^~W~a5`(y~~gSSD3~5ZR]fSx8Sx~fsJ~ddavgra~bSIcUTR~<[~b~8;u>~Xl=SHVfn~~~=tZA~l\~~~~B~UzkBUr~\Evr4~:\o~TvI\~~~~}a~XVPp~~z~APE~t~*il\:`~Mj~]~~~VM``9o]jUs~`~~~\lcGkyN~dJNXj,~j=?|f~R~MiM~|~~e7^~~zl~\~>n8q[~~L~mwgnQy~aZhBK~~Xr~~EnAwub{~k_~~~HYbfY~ViKmrCSUM~~~~d~\8~~~i~`~}m:D~]~7~|qP~sU~OJc~r~:v~vNR]rN7~R~~^y~)Z8~~wTs~a4m~~]`~~r~[K~I~~=~E~ME~QE|~I:fo~~Zy]~aE@LQ2~^~xd[~~W~~k~MH~RtRA_o~k:~v~~v~n~oM~|~~~qbgDs_~~~~~HGOyMF:~~epYQ~UOp~~lZ?~d{J~U~~~~~Jh~;Y~~~X~~NK~mHv~f~t|HmeaRSH>~X[~Gx[~MbvK`~~~~km~~I @S1_81 GTTGTGTTGCTGATACTCGCCGAACCGGTACCGTATCGCCGTGTTACCGCATTCTGGAACCCGTGGGAAGATCCCTTTGGCAGCGGCTATCAGTTACGCAATCGCTGATGGCGTTTGGTCGCGGCGAACTTTGGGGACAAGGTTTAGGTAACTCGGTACAAAAACTGGAGTATCTGCCGGAAGCGCACACTGACTTTATTTTCGCCATTATCGGCGAAGAACTGGGGTATGTCGGTGTGGTGCTGGCATTTTATGTATTCTTCGTCGCTTTTCGCGCGATGTCGATTGGCGCAAAGCGTTAGAAATTGACCACCGTTTTTCCGGTTTTCTCGCCTGTTCTATTGGCATCTGGTTTAGCTTCCAGGCGCTGGTTAACGTAGGCGCGGCGGCGGGGATGTTACCGACCAAAGGTCTGACATTGCCGCTGATCAGTTACGGTGGTTCGAGCTTACTGATTATGTCGACACCATCATGATGCTGTTGCGTATTGATTATGAAACGCGTCTGGAGAAAGGCAGGCGTTTGTACGAGGTTCACGATGAGTGGTCAAGGAAAGCGATAATGGTGATGGCAGGCGGAACCGGTGGACATGTATTCCCAGGACTGGCGGTTGCG + T%=I8SO*9%HiA1EMZI]9=]T'HNH=FK5OPM=3[/ECA5S\<>IE']RLS~NANLQJN<@E?0K;79RKQHe/=d'MVTAKTECa9:G%o?E>CG).66P~5-AD>B98JL9U8O1V?NWMBOA~MC-_+6:8:MPJE*87/W@LrEFMIPA0\\BHOE\S/5,N96O48$ML72?6K<_KBMR>}:=N49`:Q~(?6QFQ2A9]CdTE?E>1E~CID/F3\a5N/ZK;QA64G/C@O>EKEAIN10@(N9e8S<=:F>F>U1[Q8?7=QP@=F*@LD7/HB*W;>EGlbC=P$8_8%3i3`>UDPIFIVKH=NC%1?eA=S3BSN?@0E>9T0AL8/;8;xX&ML'60<%A23a;9KM>8B~-aAQ4]@O7@IF2>GLT:,:P7F.U947VIF;`>@/IX87;XRQGOV@*^,43IH=9P^0PC?L7T4WL?-%:Z37I%I*`L7@LUPkvL-OEBBOJI}>?,NK<9\l9]>6HGI=QO;PSMZ>F>C8>B|O\MR7~,EH<]4jW3I&_<2N?(Bx?n70R78L;?;IBT9Q/P0=5UG;)BI>9D1EQ80@><[VB;>AC8KG>@;_:87;MX)=?D8EN><0*7:><'3HdPWDAfNBI3$Z+/G>F%f8XT;E6b:EiAD\7?@JK5C=KWG/<6TZFQ2AoQ=5MI-K@Ge'=M**:E?@JCPAGJ?cB3PN8?LCOJ53-BCUPGJT;?91A?N>K~PSTU>wO?9@)G3D)ET$?~0-:5@?ED2GX_@L12*Y[;I;93RI,$IB~1[I8M4^D=546E>5REAB:SD-JDO\JA8N1:G.8J5-OLC4IRGEKG>'2<<1bF11+O-C$/K@VN;'?/w;2F)3->U6I5k>0.W5W;*7?MIGUbHG?H]DE;*IJZUJ@4+Z9:@BFB)xEKG?pF>>EH9/a;MhEbH< @S1_83 GCAATAACATCATCGCTTCTTGTGCATCTACCCCAAAGATTGATGAAATCATTGCACGTAGTCCTACATGGGATAAACATCTGGTTTAAGCTTCCATAGGATTTTATCAAGAGGATATTTACATAAAATTCAGAACCATCTCTTAATACAGAAGTAGCCCAGCAAATGTTTTTACCGACGACGTTATTGAGTTCCGAGCCACTAAATTTGAAACTCAACATCAATCAACTGCCAAAACATCCTCTCTATTTAAGTTTTTGGGCTTCGCTTTCAGGTTGCTCTCGTTATGTTTTACTGCTATAGCTTTGTATCGAAGTCCGCCTTCAGGA + 1MG9QP;)0W0,?D.6>U1;-EN.Dda4:^&NIG&RMK67E<:;6MCFFIX%DH.,`>8E;G<;7SL[M)?;FH%'@L=FdNIV=>J?OC/&FC@7,*7AT:Q?G0G5)*=PQ~HBMIXC39%2?=0Z.PO`:/Q>:-(DO_7:A+F`>QGN+G8B;=>?BBJObBB7ZWNJQ;;GMWY/IBU,-@DNP92H.4N)I8GDA=EG%U6-+.5,F>1%S&Nh:8F>@+Uo?KDCNt(R\?b^Fg(EFHB;*3@R,P/Q5d0GHI @S1_84 ACCATGCTGGGTACTGGTTTAGCAGGTATTGTTTATATCGCTGCGACTCAGGTGCTTTCCGGTATGTATCCGTCTTCTGTAATGGCGGCTTCCGGTGCTCCGTTTGCAATCAGGCTTCAACTATCCTCGGTAACTGGGCTGCGCCGCTGGTTTCTGCATTCACCGCCTTTGCGTGCCTGACTTCTCTGGGCTCCTGGATGATGTTGGTAGGCCAGGCAGGGTACGTGCCGCTAACGACGGTAACTTCCCGAAAGTTATGGTGAGTCGACAGCAACGGTATTCCGAAAAAAGGTCTGCTGCTGGCTGCAGTGAAAATGACTGCCCTGATGATCCTCATCACTCTGATGAACTCTGCCGGTGGTAAAGCATCTGACCGTTCGGTGACTGACCGGTATCCAGTACTGTACTATGCTGCCGTACTTCTACTCTTCGTTGACCTGATTCGTTTTGAAGGCGTTAACATCCCAACTTTGTCAGCCTGATC + ~eS~I~~^S~~~~~^ff~tha~~|],|]vM~\xN~oCy~Emi~XN~~y~I~~{~b5oALMVFX}YN2N~~YJP~eavQ~N]kJ5yO{0{CXIBLJG`1:/>AQfb>{EBKZ[OPHNEG7ZB.Ed3FZ.K35-h<([+>RZ,+QSU@_N>2IU852NO(TRE>YC,9O0IF&LH4DS`RFIdECDN{:V>0J^U[P\4D>QA?C@]>9U54CBM='SK;)+OKoHe/X0I9^.IPD^C1O*;HD>CA@=Y@:oDAOT2@SV_HI9C+[TFK4N@FN4mGB>8GHH^L;VA7;dO]>I*F< @S1_86 AGCATCACGAATTTCCGGGTATTCTTCCGGCCAGAAGGTGGTATGCAGGCGGTTGGTATTGAAAGCACCACCACGCGATGCCCCTGCTCACGCAGTTTATGCATGATGGCGATCACTTCCGGGCGCAGCGCAACAAACACCGCCTGCCAGCCGTGAGAGAACTGCTCGTAGCTTAGCGGTAGAGCCATCTCATGACACAGCGCCTCTGCGAACGCTTCGTCGCTAATTTCCCCACGCTCAGCTGATGAAACGCCTCCCCCATATGAAAACTCTTCTAAGCGATGCCAGCGGAATACGCGTTAAATCGCTCCAGGCTCCCAGCACACGGTTAAAGTCGATATCGACAATCACATTACCTAAATCAAAGATATAGGCATTTTTGCCTCCTTTCGCGCCACAAGAAATTAACTGTAGCGGGAAAGGATGGGTTTGGCTATGTGGCAATAAGGGTAATCTTGTGATGCTGATTGCGAAAAAGCAGAGTAATTTCACT + inJ~U~~~uY^ibBWnSAhU~\~ajjb~|~h~~~pzdl]:ujZ4_tpvg~|KL_qe{~QDoh~I,Z~ew~jSQsUt~u'dd|t`~MvU~v_VDIc~g~[C~uF~O_YM~Av~m*J^~~b~_~~U~_J~KV~~~~q~F{:~~e~We2cNp~~~a~~F~~@J~~~~{J~~~o{\~Za.FuOfe>Nx~~~~fuiWJhwW~HR~^DLhCEJT/;WJf\IQdFmU~K.?=dWI;=IUNRJNTR1G][aP7pbx~V?~bBo~bO0}J;PtK~5)N;H|Sm:[^}DHBPE`d<\RIN>eX^J3HOgTH=@YbIFO+XqCtw-IeMZxYp\DEi5[-y%Jh@2TV8fGOIHI*8dhTs4=DUU~~QEBaM3/ariS15_9l8~f;~j3S{BU@SQ=iS @S1_88 TGCCTGGCTGGTTCGCCAGCACTTGCTGATGTCGGTGACAGCACAACGCCGCGATATTCAGGACCCGAAGTCATCAAGCAGTTTGCCGAAGAAGTTCAAACGGAAAATCGTCTGCGCTATCTGGTATGCCTGACAGTGGCTACATTTGCGCCACCAACGAAACGCTGTGGAATAGCTGGAAGCAAAGTCGTTGCGCGAACTCTATTTTGCCACCGAAAAGCAGCTACGACGCGGAATGCAAAACACGCGGATATGCGCGAACGGGTTCGCCATCACCAACTCCAGGCACTGGCACTACGCGCATGGATAACATCGACGAAGAGGCGCTGCACCAAATTGGTCACGCTGTCGTGCTAATATTTGTCCGCCATAGCCCAAATCAAC + IUZy+~4~~cWi^c~~j{VIf~U~F`~qH~,WSZ~4X~)~~XZ?j-<-}[~~ZNxQ^l~jV~pl~9ZQoD9hMIo~J`gu~al~_L~~gx2lQ]~IaJH~U~Qe~~~~L_c|p~W~}Eg~lUe~vV|5Pr~hZ~~Omu~h~QK[~Q;N[kE~~\vN`>Qud~A~~~~V`l~Kl~i8~ZRT~[Fafks~]rf~\ZZA~;^>]~R{sj~k~~ne9zwj~Q]Ass~~~~~s~KdK~e~d~m~oSV~W~b~zb~~-X`~*_l_MgsGY9~l~UUZkYD~1X]e~W~j^^R^lmlh~Fu~L]`~ad8~~~U~Rv~~~~e:DfNv~jEZ`jM\w]<6pD~Y5~~T_~~~pP|{dyW~IMXZfT{C`jH~twTb`~en~OL:b~~wi~ua~ @S1_89 GCGATCCAGTTAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTTGCCATCTGCCGGACTTAACCGCCGACTGGCCGCCGAATGGCTGGAAACCTTCCAGGCGAAAGAGCTGGAAGCGACTGAAAAAATGCTCTCTCTTGAGCAGAAAATGAGCATGGCGCAAACCGCGCACAGCCAGTTTGAGCAGGCTTATCAGCTGGTGGTGGCAATCAACGGCCCGCTGCGCGTAACGAGGCGTGGATGTCGCTCGCGAACTATTGCGCGAAGGGGTCGATCAG + s~~yj~X~jy]b>~;~[D`NX~_~~~8XcCL/*~{W~~M~`YLfC'CODi`MO~~~d~F~~>z~~Y>[~3AQ[TfPTobI~~C7q~w0~~zw~YbeaT~RV~fuG~tLT1BAtN~MIl~~VaN~i_C~x~G~~^B{=~uZhhaA|X8su~J{NGm}jwq~Xhv~v~V~M~~{^~~~9~Nzr\ZogwR~7reZ~>JSod~kCiMSf~~jW3~~^TOt~Q]~r~2cyMe~`KjUy}WDKF`e~DCW]Y|1l5~Du~Y8~n4~~lF\~NR~Aa_.jh@x~~zAp^~ @S1_90 TGGCAACGCAATGACCAGTTTGCGCCCATGCTTCATTTGCAGCGCGACAACCACAGCTTAAATCCGCCCGGCGGTTTCGACTGGGCAGCAGGTTCAAGTGTATTCATCTTTGCTCCTTAAACGTCAGCACCACACAGCTGTCCACTTCCCAGCACAAACGCACTTCGTCGCCCCAGGTCGGTAACCCTTACGATGACGATGGGCGTTTTGTAGCTGGGCGCTAATCATCTGCCCACTTTTCAGACGAACGTGATACACCGAAAGATCGCCGAGATAGGCAATGTGTATCACCTCCCCCACCGCGAAGTTACAACCATTGGCGGGCGGCTCTTCGCAAAGCATGATTTTTTCCGGGCGCAGCGCTACGTGTACCGGCACGTTATCGACACTGAAGCATCCGCATCGACTTTCAGTGGATGCACCAGCCCCGGCGAATCAAGCACCAGGCCATCTTCCTGACGCTCTTTGAGT + ~~XK>su~>~ZQi~O~Q|~~5gMw~~3^lC~Z~~U~Zym`Tx`lnrhm6Mf=zxgeFjtysT~P~~FXPd~g?@~`dS~gcJY?q~X~<}Gz~~y~d~Oy~|~:m~P~~~QZ?YLyCT\K~gsyFS[[~m~~~~rlkrVbjVkqrg&fjF`Q^~yU~~sqX\FWPhrk>~~pH~~jS~~~~H~N~`f~J;;ea~~`PC~V~`v~LZ^b/DKuS~~JA6vR~ff;a~R`>~f4@?}TL:{~~tqMX^D_Mk`:~~CJ~Dnz2)}C~]G~N~~~a[?gh~w{S3~PysIS~g~jg]_Dij~f@}]T~P~V~^~NLdas~Z~W~j~8~~IGe~sYW~p@~X\~dX>ujgOYq~t]YKa~EZA[~|yQ`P@[WcP~jVE~lYCB~gfQbwLl~U~{~W{EV~dp~y?R~M~RV~CMH[Mo~]@g`~~D,rQ=D{w~Bh~pey~jY|~e'~+~'~~`]~WIUjP_~u~~C~_ZV~~ @S1_91 AATTTCATTTTTGAATTTGGAGTCCGGGTCTGATGTATATCTATTTCCTGACCAGACCAAACTGGCGCTAAGAATTCTCACGAAAAAAGGATTAATCCTAAAGATTAGGTGAAATAACACAAAAGTTTCTGTAAGTGAGAACTTGAGGTTTTTTATTAACACATCAGGACGCAAGTTGATATCATGAAAAGATAACATTCAATTTTTACAATGGATTGCGGTGATATTCTCTGTTAAATTTATGAATAAAAATTATGCGGCAAATAAATTGCCGCAACATATTATACCAACAGAAACATACCAAAAACTCAACAACAAATATTCCCGAGCATAAATCAACCCGGGAGTTACTATTCTGAAGCGAGAAATTTGTCGAGATAAGGTACAACAAAGGAACAGAAGTCTGGAATATACCATT + ZAEH58JQLKB>O=@C5?@=26FH):UAKNCI=9*4FP/+37@BICJ*2:*UDJ352/M'?>8?PUI.K=3@6J2,m?D2TH.A,O:7@4M,HFB0CVK$S)+3:K7:9>,6JG;QBJF1)AJ87['=QM=KHH8FIL/CMe,Y@K>B2C=Q.&I=?GIB0>D5:B:-50.GL9eM2%=TC>LI>BI)9,D*A98?~G0I<7?51(.:)/7ECD&0KJ3ETQI)I--6:6*K,.B61524;)<*G$4+8H>;1V,%<4;1R+(;42FH=9$m>FC;%K3'A4=IE@7/8GMH9;2AB@=>OF\bN0OOXKGHD5O>7EB,38+L:-C'UW>GAIZENI;HK[G7@>`I^?,@}B2H]IINW(LJJG6@GW?;0&DEMRFIE~,EBED?E52@EV.8R;&@4PM;QG6D@PDuOeYGCOy,dBUWQ=CNG/G>@(;^X49RHN?@J3(JE@:CK;9B'OFH64qI6I]@3D91:IF;4hj,M8G@\U8:eSZC=7C\V@=>;fCFi@71M5EBPCZ)KB;HJEC%O%:qPm=-_6%8u @S1_93 TAACAAAGTTTTTCAGCTCGTTCTATAAACGGGCCAGACTCATTTTTTCGCCGGGATTGTTAGGATCATCAATCTGAATCACCGAATGGGTTGGGCTTTAGTCTTCCCACTGGCAACTTCCTTTTGTGCGATATCGTTTAAAGGATACTGCACAGGGTACTTGGGTTGATGACATACAAGCATTACCCGTCGGCAAGTCGCATCACCTCTTCGCGATTAAACGCCCATTTGTCTTTACCCACTTCAAAACGGCTGACGGTAATCACCTGCGGTGCAGCCAGCGCCGCGCAAACTGGTGAGTAACAGAAACGCCAGAATACTTTTTTTCATCATTTTCGTAATCCATCAAAAAGGTTCGAGATCGCAAGCAGGCTGATATCACCAGCACTACCGCACCTATCGCCCATTCGAGTTAGTCATCCACTCAAACCAGGGTGCCGCACGATCTTCATCCTGCCTCATGCGCGGTACAAGAACATAACGATTAGCCAGCGCAATGACCACCATAATCATCACCAGGATGGCTTTGAGCAATAAGAGTTGGCCCCAGTAAGTCGTAAGCGTGGGGGGAAATCCGGTAATCAACAATGCATTAAGCACGCCGCTTGCCAGTACGCCGATCACCGCAAAATGCCCGCACCAGGAAAAAC + F5KQT6'MYHpdRA%DU>+>X~U?AJ4>EG~XMJw.@W?s~5IR27SI+ETZ*=wBE]MW2M~ATt&Q@@:@-QO6H3?7JgeK^JJaksIW2IqH~U{@R1=TE\KJcGP?~h5ruaHJMk=FJGVyE~O?2GZP$bX~WQQUGg%GYW{>C|*LLBCV8:CYXFxM~hIFG~Y]MY18C\-CFdLd/LJuUJB~Lu:;]QO2<:OWfCag~PfFDAj3[~~&H~[Qnj\S4zHB1ovT:H7lw~u}t_%T\[E2Y$VPR,fX~LLXjDhP`Al_R~Is_?KqIh~CK0K?Ww~iGI>=J)KqB~VQ~^K]~ST.ICFQFNM~IJPMQ]HYLeQLdo~aT8=P[cSfcu0kHPPNX.~vNDBXgf4UZ14A=COUc18SZE~c~EeU\g@XRE@u~5N?]H>M^oPG`\:Z+gL~8ADicP>FS:~PAK_Zf~9AQYU~5`Z7S75[46@oWL|=DoLRDu~ik444M[4S;N[]EO8IU3B~@woQb*fe|aWNSKSa7HE~m^K;~RSBGR~DLfk~iH``k4@JPP;Gv>GMXcXT/~SJ=O\H*BESWc,No~UIOMM8IhU+U@FYrVc37>LmMaKhQM'7LF@Yf\dyPIYjF\??E~):=M~Y~9>=E>EaQQK0~~~ @S1_95 CAGCCAGGCATTGCGCTTTCAGCGCCTCGCGCAGGGCAATCGCTTCACGAGCGTAGCCGACAATACGCGGAGAATCGAAGTTAACGTTGGTCAGGTTGGAGAAAAGGCACGTGGCGCGAAGCTGTCAACATCGTGTTGATGATGCCGTATTCACGCGCTTTACCGCCCAGGCAGAAAGCCCTTGCAGCGCCGCGATGAGTAAATCCTGAAGGTCAGAAGTTTCGCCGTTTTACCACACATCCCCTGCGCGTATGGCAGCCGTTTCCTGCCGGAGTACGGATAGTTTGTTCACATTGCACACAAAACATGATCACACCTTTTAAAGTTATATTTAATATACATGTTTAAGGTTAAGACGCTTAACGCGGGGAT + O>N}A@K2F_X's5:^H`*=4UL>S~>^~GHNCSJQeRFmC~Tt3_V<>XGC~POQM\~;c0Y1WdEKFY$FXT@LESUP~[Qv>+:IL8R~=}]gK.~NJ~g0Ba?D.hQ~?2UKhMP~Ee{OKG*nI\0QHpUWGgYIG>5S~[]gq~d=`KI=c9avjh:|J`CaC~pF9~{8HGYAE;K1Dj~f[LKPBT;ZEK:EH+I?])14H^0JU?Mya;]LU:[T^lBbCJfH;=Tp>HZDg_\K~tFKbbqHWS~GJ~jJ2Gc@R4iMMObC@=Kx3MFk@~~nOU~WQN.FlQC6G6ThV1iS~AN.KQUZMAA[l=-6Zf;@GLG\RX@;Kd_I`~:==NSH^i1D^5JIVCG~^JHC0F;N8VTTR_cM @S1_96 CGCTGTTTTTCTACCTGATCACCACGGCTACCACACGCCCCACAATTTCATGACCCGGTACGCAGGGGTAAACCGTCCCCGCCCACTCGGAACGGACCTGGTGGAGATCGGAATGGCAGACGCCACAGTAAGCGATTTCGATTTTGACATCATTCGGTCCCGGTTCACGCCGTGTGATATCCATCGGTTCAAGTGGTTGTTTAGCGGAATATGCCCAATAGCTTTGTCTTCATTGTGTTTACTCCTGATTAGCTATGTGTATTTGGCGATGCCTGATATGTCATCCGCAAAACGCGTCCATTGAATATAGCCAATATTTAAACCACCCGATCCAGCCCCAACATGCCGCGAACCTGAATGAAACAGAGCAGCAACGTTCCCCATAAGGCCATCGTCAGGTAGGGGCTATACCGAGAATTTGA + MYO~~KgP|s~~V;C]~h{~xW^~~~_oR~@N?=H~+_~}~ze2~Z_[q9IQEW~~~1ON~V_xFWrF|Wrx~3{c\~~~~~~~~ov~q~~I~;~~\I|0cTd]<~~M~Z~\+~E~\kg~FI~~N`~nmQ[~hn~Yc{iG~^g~~]Y<~o~~g^~{~Y~@mC~0x~D=Ht~}~Pe}qmkRA:Q[b~'~@~~vxabV~kF1~@~xX~CyRv~C{Dd~~Ps~~`\`qn{f<~h~x~^~zTr~~S~YGO~~bmkK~xoXMQ~1~+~N~~~`IVR~RBZ~T~|~c~MkN`jq~wQ~oK-r~~d~~e~~m;|p~GVF~fw9vHu_~u]Z~I~n'~Yh\~c~z~Q\+VgwkC}HR>k~gy~4qpp\g{~~U8h~~hU~~~[Uu~`v~ @S1_97 GACGACGCCAGGTTTTCCAGTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTCGGTGAAAGAACTGAGGCGGTGTTTTTTATTGGAAATCAAAAGGCTATTTTAGGTAATTAACAGAGTTTTTCAGCTCGTTCTATAAACGGTGCCAGACTCATTTTTTCGCCGGGATTGTTAGGATCATCAATCTGAATCACCGAAATGGGTTGGCTTTAGTCTTCCCACTGGCAACTTCCTTTTGTGCGATATCGTTTAAGGATACTGCACGAGGGTACTGGGTTGATGACATACAAAGCATTACCCGGTCGGCAAGTCAGCATCACCTCTTCGCGATTAAACGCCCATTTGTCTTTACCCACTTCAAACGGCTGACGGTAATCACTGCGGTGCAGCCAGCGCCGCTGCAGAACTGGTGA + ^y~vMCBlQ[e~~~~R~~bdEDA^~\~~[LN~~~C,~NY3l~s9fkVUMghXrqeX~_~2p1iK~s~no8\~~~~UQMXbd~h1]~C;Z~?z~\tR~Z~i^~H~u8P~(kSd@~Rd{EV~~\On~q~b~[~VR~Q~xOexi~~qOB~~~~~~xs~[]~~QEz~~M~u~reI~Kcl8~HC~z~VXT4au~[uy~[o~AKe|_^bZ~~^Xwf~XGI^_~n~~~_Hci~Jrv_5,~Q[Z~hu\~hb~wpRrE~?~~OOd~]~k~~XU~brn~N|tfBeBze}nR~nL~l`v~N~a~~{vaSK>Qu||~~~G\Q|]~~mhk~~M{~rf~S@~U26hwhJE^~1i~g~efK~~~~~l_W~~mv~rc~=~~~~\h~~`Ohvexn~VG~qj~[eX~ @S1_98 AAAGATTGCGTCATTCGCGTCGCTTGTGATGTCACCAATCCGCGGTGGGCGATAACGGCGCATCGCGCATCTTTGGCCCACAAAAGGGAGCCAGTGAAGCGATGATTGTTGAGCTGGACAATAACCTCTCTCACTATGCCGATGTCATTAAAAAAGCCGCATGTTGATGTGAAAGATGTCCCCGGCGCAGGAGCTGCGGGCGGTATGGGTGCGGCGCTGATGGCGTTTCTTGGTGCGGAACTGAAAAGTGGTATGAAATCGTCACTACGGCGCTGAATCTGGAGGAACTATTCACGATTGTACGCTGGTGATCACCGGTGAAGGGCTATTGACAGCCAGAGTATTCACGGCAAGGTACCGATTGGCGTGCAAACGTGGCGAAGAGTACCATAAACCGGTGA + ~\~~yq{~I8V.~S~XFRM~Sp~~B~?a[bDI~~~aRo~JsTKli~t_E~~]GrU~\[aflV_V~VeMuPEOfVk~~E~9}~ar]drio~~?9EG~L]~~p;~~D:m8~OAa~i~F~\_TED[J~SI~sA~KHT~3@W>3hJcRcb\Gm~`yv~~u~~o[r;jjYTlKmsN~lu4~~J@\{g~W~]}~?R9dWZ~^qSm~vj}J~i~~y~~BPs_M~;{~=~2G6~V`~rVKB~B~Q~g~~?~IeEDM~~~+h~GXlMf>~~R~gZv~X~\-~XJKNU[G~C~@~~_M*v5~]Ua~^~X{{y|_~uZ~zz~gm~[NohJoDNDfek=~A^U~-~~~DRbm{R*N~EK?sZb~jkJ~~~[~^^cJ~[{~[@j~CW~v`~~~RD~k`w5~v^y~k=~_L]\kQ @S1_99 CCTCTGCCTGAGTAGTTCAAATCCTGCTCGACCATACTTCTGGCGTTTCAGCATCTTCTTCAGGCAGATTTACATGACCTTCGACAACACCATTACTCCAGCGACATGATTGCCTCACTATAGCTGCAGCATCAGCTTCCATCCCCGCCGCCCACGCGCCGAAATTCTGCTGAACCGCTTCGTGGACTCGAGTGAACCAACTGCTTAGCTGTGATTTATTTTGGGTTTTAGAATACGGTAGAACTCGAGTGCCAGTTGCTGCGCTATTTTCAGCTCAGGTTCTTTTTCACACATCAGACTAATAAATCGGGAAGCATAATTTTCTTCATCCCTGGTTATTCTCAGGGCATCAACCAGCGGCTTACCCGGGAGACTGAAGGAAGTCTGACGGCAGTAGTATACCGGTGGGTTCCAGCCTTACGCCATTTGGCAACCGCACCCTGACGATGGGTTTCATGCCTGTAAATCCCCGGGCCACCATTTCCCGCCATATCCGGCTGGCGTTATAATTACCACTTTCTCGTTGCTCTTTTAACCACTCCCTCCATGGTGTCAGCGAAAAACGAAACCGCTGTTGAATCCCTGGAAAGCTGGTTGCGGAAAAGATGAAGACCCAGTCGC + dW5?KK@J9;&:,'NF:\,K=D\S24;/?=>N(7G~MC,Q-5U.67ND6a>I0=39FC(H-?0D:RDH@7DE@.8N<3)5F+(P@IIJYL,AR56K1`A6J5g9;8G:+8C7;33>??8=9<+J39B;N3FD'3@Y+L8D1>%A5G-I6]60TOk0H/,0989;+S9053M_G9,>.37TF-,0>B86HY=/6K*:5Y*?1U>I<.BGP@F@:*BI8A::6L5I3:6GYQ3&K-GPH8?D(ABP==84E+9:,.EL)cA?:8?G4?=(144:1]F6-(8ABB2+J:CEY7,B~PCGZ/7/R@?+?I90L36b9=)E:FTO@&>*;1K:M/*HEB9HT5U6&G5:38B/*?'.+@2>5(;BE>R;B61+*C9,QB%C[BJ?EL2HT;JEa48D4H-:*J=CaMHO=6?\<8'/E4JA)YJ6:Y=1802@&d@%1DKMS.R<8L&]L2J%:P?Q^*+C;<@@P?;9O$L>2P-E5.1-8%B4;ED:H5?2G-HB11>)EN+RH2.'ML/EL @S1_100 TGCGATGTTGACACGTCTTATCCTTCAATGTCGGATGCGACCTGCCGCGTCTTATCCGACCTACGGTTGGCACGCATCCGGCAATGTTGTAAGGCTACAACCCTAACGCAATTTCAGCGCCTGACGTTTAACACGCCAGCACGCTCTGCCGCCATTAACCCGAGATTACGCACAAAACGCAGCGGCGGCAGATTATTATGAATCCGGCATAAAACAGATCCAACCACTTTGCATAATGA + <5~\Nm@b;l]5Il:SUH\+NFNL?~Pb7f@&w~\IPXrZ?TOV;HR+,8SU`PH)IBE:IN~sNFF(RW}DrJ;a'~i< TEST lastal -a1 -D1000 /tmp/last-test galGal3-M-32.fa lastal: quality data not used for non-fastq query versus fastq reference # # a=1 b=1 A=1 B=1 e=23 d=14 x=22 y=9 z=22 D=1000 E=6.44057e+09 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=100 normal letters=45801 # lambda=0.661467 K=0.0260716 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=24 EG2=3.3e+09 E=4.4 s S1_36 411 53 + 604 GAATGGCATCAGAAGGAGCTAATAATGAGCAGAAAAACCCAACGTTACTCTAA q S1_36 XWl?TeW3A~]_PEo~Q]rL[m5T@DV~P[FE-=0-==:4_+E3-Qo&4~ s 94 17 19 + 36 GCGCGGAGGAGG---ACGG-GGG q 94 hhhhhhhhhXhh---hhhh-FB] # Query sequences=100 normal letters=3600 TEST lastal -Q1 -pBL62 -F12 -D1000 /tmp/last-test sd-ccs-100.fq lastal: quality data not used for DNA-versus-protein alignment # # a=11 b=2 A=11 B=2 F=12 e=36 d=29 x=35 y=31 z=35 D=1000 E=8.12312e+11 # R=00 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=1 # /tmp/last-test # Reference sequences=1 normal letters=491 # lambda=0.327048 K=0.105437 # # A R N D C Q E G H I L K M F P S T W Y V B J Z X * # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4 # R -1 5 0 -2 -3 1 0 -2 0 -3 -2 2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2 0 -1 -4 # N -2 0 6 1 -3 0 0 0 1 -3 -3 0 -2 -3 -2 1 0 -4 -2 -3 4 -3 0 -1 -4 # D -2 -2 1 6 -3 0 2 -1 -1 -3 -4 -1 -3 -3 -1 0 -1 -4 -3 -3 4 -3 1 -1 -4 # C 0 -3 -3 -3 9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4 # Q -1 1 0 0 -3 5 2 -2 0 -3 -2 1 0 -3 -1 0 -1 -2 -1 -2 0 -2 4 -1 -4 # E -1 0 0 2 -4 2 5 -2 0 -3 -3 1 -2 -3 -1 0 -1 -3 -2 -2 1 -3 4 -1 -4 # G 0 -2 0 -1 -3 -2 -2 6 -2 -4 -4 -2 -3 -3 -2 0 -2 -2 -3 -3 -1 -4 -2 -1 -4 # H -2 0 1 -1 -3 0 0 -2 8 -3 -3 -1 -2 -1 -2 -1 -2 -2 2 -3 0 -3 0 -1 -4 # I -1 -3 -3 -3 -1 -3 -3 -4 -3 4 2 -3 1 0 -3 -2 -1 -3 -1 3 -3 3 -3 -1 -4 # L -1 -2 -3 -4 -1 -2 -3 -4 -3 2 4 -2 2 0 -3 -2 -1 -2 -1 1 -4 3 -3 -1 -4 # K -1 2 0 -1 -3 1 1 -2 -1 -3 -2 5 -1 -3 -1 0 -1 -3 -2 -2 0 -3 1 -1 -4 # M -1 -1 -2 -3 -1 0 -2 -3 -2 1 2 -1 5 0 -2 -1 -1 -1 -1 1 -3 2 -1 -1 -4 # F -2 -3 -3 -3 -2 -3 -3 -3 -1 0 0 -3 0 6 -4 -2 -2 1 3 -1 -3 0 -3 -1 -4 # P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4 7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4 # S 1 -1 1 0 -1 0 0 0 -1 -2 -2 0 -1 -2 -1 4 1 -3 -2 -2 0 -2 0 -1 -4 # T 0 -1 0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1 1 5 -2 -2 0 -1 -1 -1 -1 -4 # W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1 1 -4 -3 -2 11 2 -3 -4 -2 -2 -1 -4 # Y -2 -2 -2 -3 -2 -1 -2 -3 2 -1 -1 -2 -1 3 -3 -2 -2 2 7 -1 -3 -1 -2 -1 -4 # V 0 -3 -3 -3 -1 -2 -2 -3 -3 3 1 -2 1 -1 -2 -2 0 -3 -1 4 -3 2 -2 -1 -4 # B -2 -1 4 4 -3 0 1 -1 0 -3 -4 0 -3 -3 -2 0 -1 -4 -3 -3 4 -3 0 -1 -4 # J -1 -2 -3 -3 -1 -2 -3 -4 -3 3 3 -3 2 0 -3 -2 -1 -2 -1 2 -3 3 -3 -1 -4 # Z -1 0 0 1 -3 4 4 -2 0 -3 -3 1 -1 -3 -1 0 -1 -2 -2 -2 0 -3 4 -1 -4 # X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4 # * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=48 EG2=1.6e+10 E=0.0092 s Q2LCP8 124 23 + 491 MEAHNLITLFLSLEISSICFYIL s S1_1 360 69 - 743 MGFHNMR*LFFFISLREICFWII a score=39 EG2=3e+11 E=0.19 s Q2LCP8 394 34 + 491 FISKILILLPYMVLGRVYLTMLAFFLSVGVMIYY s S1_1 395 102 - 743 YISEGNMFLDYFALGVLIFVFLVIFYGIIILMIF a score=36 EG2=8.1e+11 E=0.36 s Q2LCP8 14 42 + 491 SIYILPLIILIVLSISIKK--DVQRVHIIIQSLKLTLIVIMIVI s S1_5 78 132 - 558 TITLLNLILRILLSYLIREVIMVQRITIAPQGPSFPVLYGLLAI a score=37 EG2=5.9e+11 E=0.26 s Q2LCP8 384 11 + 491 YLAGLPPMTNF s S1_9 213 33 + 563 YLAALPPEARF a score=36 EG2=8.1e+11 E=0.56 s Q2LCP8 136 23 + 491 LEISSICFYILALNKNSRKGIEG s S1_13 414 69 + 824 ITISTVMFHMCRLNHDSVPVLQG a score=40 EG2=2.2e+11 E=0.11 s Q2LCP8 284 23 + 491 LVVGTIGSLRQQKLIRFIAYSAI s S1_17 515 69 - 643 VLVGRSGSGKSSLLTRFLVFSHI a score=39 EG2=3e+11 E=0.13 s Q2LCP8 288 20 + 491 TIGSLRQQKLIRFIAYSAIV s S1_19 408 60 + 552 TGGKRSVQKVYRFLSYCLIV a score=38 EG2=4.2e+11 E=0.18 s Q2LCP8 31 25 + 491 KKDVQRVHIIIQSLKLTLIVIMIVI s S1_19 417 75 + 552 KRSVQKVYRFLSYCLIVIIVITVSI a score=42 EG2=1.1e+11 E=0.041 s Q2LCP8 293 50 + 491 RQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVL s S1_20 20 150 + 484 RRERKYRCQACSATTNYAIALLQSVSPDNRSSLRQAAFFLPGHCMRLTAI a score=38 EG2=4.2e+11 E=0.066 s Q2LCP8 206 19 + 491 QMGIALIVLGLILKLGIAP s S1_24 77 57 - 251 EIGVAVIDCGGTLRCGIYP a score=39 EG2=3e+11 E=0.2 s Q2LCP8 94 28 + 491 EEGVTEGKKTKITDEGLILIYSSIIGML s S1_26 118 84 + 786 EEAVRNSEKMSLSDSELDAAFYAVIVML a score=39 EG2=3e+11 E=0.2 s Q2LCP8 323 39 + 491 ELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDI s S1_26 297 117 + 786 EFFLNLINHRIGKSAGWVFLLCLLLGFRGKYSVGSNDEI a score=36 EG2=8.1e+11 E=0.54 s Q2LCP8 98 39 + 491 TEGKKTKITDEGLILIYSSIIGM-LISMEAHNLITLFLSL s S1_26 483 116 + 786 TQGKKV*IIEAWFLFITCGIVAV/LFCGFIHDLYEMILCL a score=40 EG2=2.2e+11 E=0.14 s Q2LCP8 333 16 + 491 INYIIGLTVLMSLIMG s S1_26 673 48 - 786 VNYILSSTVVITIFFG a score=42 EG2=1.1e+11 E=0.051 s Q2LCP8 135 21 + 491 SLEISSICFYILALNKNSRKG s S1_40 89 63 + 579 SAQIYTTCEAIKAINKNAASG a score=42 EG2=1.1e+11 E=0.051 s Q2LCP8 252 39 + 491 TLMVLINLYQNLIIYTNAIMFTNGLIILILVTL-VVGTIG s S1_40 57 116 - 579 TLAGRIYSYVSIIGHFSFLVFATYLLILFPLTL/IVGSRG a score=36 EG2=8.1e+11 E=0.38 s Q2LCP8 88 53 + 491 MIIKMFEEGVTEGKKTKITDEGLILIYSSIIGMLISMEAHNLITLFLSLEISS s S1_40 3 159 - 579 ILLSLVIGAVTCFRRLPTTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTLSS a score=38 EG2=4.2e+11 E=0.23 s Q2LCP8 422 28 + 491 GVMIYYMNLVKIIIIDK-VQTHEQGVAEL s S1_54 177 87 + 662 GAMMLQAPQVALIVDDEFIQTHTVGFDEL a score=36 EG2=8.1e+11 E=0.44 s Q2LCP8 183 11 + 491 STGSLMYTDLL s S1_54 23 33 + 662 STGTLAWSDLL a score=36 EG2=8.1e+11 E=0.44 s Q2LCP8 254 10 + 491 MVLINLYQNL s S1_54 7 30 + 662 MIAINLYRNV a score=37 EG2=5.9e+11 E=0.2 s Q2LCP8 251 50 + 491 VTLMVLINLYQNLIIYTNAIMFTNGLIILILVTLVVGTIGSLRQQKLIRF s S1_61 95 150 + 442 ITLSGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAF a score=43 EG2=8.2e+10 E=0.03 s Q2LCP8 205 72 + 491 IQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKLVTLMVLINLYQNLIIYTNAIMFTNGL s S1_67 215 207 - 496 LELAISSVVLAVIIGLIGA---GGKLSQNRLSGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNTVTEAMGV a score=37 EG2=5.9e+11 E=0.21 s Q2LCP8 197 24 + 491 MENTDDYRIQMGIALIVLGLILKL s S1_68 178 72 + 460 LDSTADYPQQPGVVLIKVPKTLAL a score=44 EG2=5.9e+10 E=0.025 s Q2LCP8 389 27 + 491 PPMTNFISKILILLPYMVLGRV-YLTML s S1_80 199 80 - 550 PPTARFVAEYSIQLSYGCIGKI/YLLLI a score=41 EG2=1.6e+11 E=0.039 s Q2LCP8 437 21 + 491 DKVQTHEQGVAELEITSKPTK s S1_85 153 63 + 361 DSVKSSQLTRARLEVISTPTK a score=42 EG2=1.1e+11 E=0.028 s Q2LCP8 204 47 + 491 RIQMGIALIVLGLILKLGI-APFHGWLIDVYEGAGMLMTFYLTITQKL s S1_85 34 142 - 361 RCRTGLTAVVVGVMFLLVM\SSHRGGMVPPYATAGALIFVGVLMTSSL a score=56 EG2=1.2e+09 E=0.0003 s Q2LCP8 395 44 + 491 ISKILILLPYMVLGRVYLTMLAFFLSVGVM-IYYMNLVKIIIIDK s S1_91 49 131 - 418 ISRFRIVTPGLIYAREYLLLSFWYVSVGII/MLRQFICRIIFIHK a score=37 EG2=5.9e+11 E=0.31 s Q2LCP8 44 14 + 491 LKLTLIVIMIVIGI s S1_93 119 42 - 650 LKAILVMIMVVIAL a score=38 EG2=4.2e+11 E=0.12 s Q2LCP8 55 21 + 491 IGIEESIYVKLNGHLIKTELI s S1_98 258 63 - 401 IGIVREVIVQLNNHRFTGSLL a score=41 EG2=1.6e+11 E=0.077 s Q2LCP8 344 15 + 491 SLIMGFLRLNDRGTI s S1_99 437 45 + 621 TLTMGFMPVNPRATI # Query sequences=100 normal letters=45801 TEST lastal -Q1 -pBL62codon.mat -F12 -t3.08611 -e36 -d29 /tmp/last-test sd-ccs-100.fq lastal: quality data not used for DNA-versus-protein alignment # # a=11 b=2 A=11 B=2 F=12 e=36 d=29 x=35 y=31 z=35 D=1e+06 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=1 # /tmp/last-test # Reference sequences=1 normal letters=492 # # GCT GCC GCA GCG CGT CGC CGA CGG AGA AGG AAT AAC GAT GAC TGT TGC CAA CAG GAA GAG GGT GGC GGA GGG CAT CAC ATT ATC ATA TTA TTG CTT CTC CTA CTG AAA AAG ATG TTT TTC CCT CCC CCA CCG TCT TCC TCA TCG AGT AGC ACT ACC ACA ACG TGG TAT TAC GTT GTC GTA GTG TAA TAG TGA # A 4 4 4 4 -1 -1 -1 -1 -1 -1 -2 -2 -2 -2 0 0 -1 -1 -1 -1 0 0 0 0 -2 -2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 1 1 1 1 1 1 0 0 0 0 -3 -2 -2 0 0 0 0 -4 -4 -4 # R -1 -1 -1 -1 5 5 5 5 5 5 0 0 -2 -2 -3 -3 1 1 0 0 -2 -2 -2 -2 0 0 -3 -3 -3 -2 -2 -2 -2 -2 -2 2 2 -1 -3 -3 -2 -2 -2 -2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -3 -2 -2 -3 -3 -3 -3 -4 -4 -4 # N -2 -2 -2 -2 0 0 0 0 0 0 6 6 1 1 -3 -3 0 0 0 0 0 0 0 0 1 1 -3 -3 -3 -3 -3 -3 -3 -3 -3 0 0 -2 -3 -3 -2 -2 -2 -2 1 1 1 1 1 1 0 0 0 0 -4 -2 -2 -3 -3 -3 -3 -4 -4 -4 # D -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 1 1 6 6 -3 -3 0 0 2 2 -1 -1 -1 -1 -1 -1 -3 -3 -3 -4 -4 -4 -4 -4 -4 -1 -1 -3 -3 -3 -1 -1 -1 -1 0 0 0 0 0 0 -1 -1 -1 -1 -4 -3 -3 -3 -3 -3 -3 -4 -4 -4 # C 0 0 0 0 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 9 9 -3 -3 -4 -4 -3 -3 -3 -3 -3 -3 -1 -1 -1 -1 -1 -1 -1 -1 -1 -3 -3 -1 -2 -2 -3 -3 -3 -3 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -2 -2 -2 -1 -1 -1 -1 -4 -4 -4 # Q -1 -1 -1 -1 1 1 1 1 1 1 0 0 0 0 -3 -3 5 5 2 2 -2 -2 -2 -2 0 0 -3 -3 -3 -2 -2 -2 -2 -2 -2 1 1 0 -3 -3 -1 -1 -1 -1 0 0 0 0 0 0 -1 -1 -1 -1 -2 -1 -1 -2 -2 -2 -2 -4 -4 -4 # E -1 -1 -1 -1 0 0 0 0 0 0 0 0 2 2 -4 -4 2 2 5 5 -2 -2 -2 -2 0 0 -3 -3 -3 -3 -3 -3 -3 -3 -3 1 1 -2 -3 -3 -1 -1 -1 -1 0 0 0 0 0 0 -1 -1 -1 -1 -3 -2 -2 -2 -2 -2 -2 -4 -4 -4 # G 0 0 0 0 -2 -2 -2 -2 -2 -2 0 0 -1 -1 -3 -3 -2 -2 -2 -2 6 6 6 6 -2 -2 -4 -4 -4 -4 -4 -4 -4 -4 -4 -2 -2 -3 -3 -3 -2 -2 -2 -2 0 0 0 0 0 0 -2 -2 -2 -2 -2 -3 -3 -3 -3 -3 -3 -4 -4 -4 # H -2 -2 -2 -2 0 0 0 0 0 0 1 1 -1 -1 -3 -3 0 0 0 0 -2 -2 -2 -2 8 8 -3 -3 -3 -3 -3 -3 -3 -3 -3 -1 -1 -2 -1 -1 -2 -2 -2 -2 -1 -1 -1 -1 -1 -1 -2 -2 -2 -2 -2 2 2 -3 -3 -3 -3 -4 -4 -4 # I -1 -1 -1 -1 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -1 -1 -3 -3 -3 -3 -4 -4 -4 -4 -3 -3 4 4 4 2 2 2 2 2 2 -3 -3 1 0 0 -3 -3 -3 -3 -2 -2 -2 -2 -2 -2 -1 -1 -1 -1 -3 -1 -1 3 3 3 3 -4 -4 -4 # L -1 -1 -1 -1 -2 -2 -2 -2 -2 -2 -3 -3 -4 -4 -1 -1 -2 -2 -3 -3 -4 -4 -4 -4 -3 -3 2 2 2 4 4 4 4 4 4 -2 -2 2 0 0 -3 -3 -3 -3 -2 -2 -2 -2 -2 -2 -1 -1 -1 -1 -2 -1 -1 1 1 1 1 -4 -4 -4 # K -1 -1 -1 -1 2 2 2 2 2 2 0 0 -1 -1 -3 -3 1 1 1 1 -2 -2 -2 -2 -1 -1 -3 -3 -3 -2 -2 -2 -2 -2 -2 5 5 -1 -3 -3 -1 -1 -1 -1 0 0 0 0 0 0 -1 -1 -1 -1 -3 -2 -2 -2 -2 -2 -2 -4 -4 -4 # M -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -2 -2 -3 -3 -1 -1 0 0 -2 -2 -3 -3 -3 -3 -2 -2 1 1 1 2 2 2 2 2 2 -1 -1 5 0 0 -2 -2 -2 -2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 1 1 1 1 -4 -4 -4 # F -2 -2 -2 -2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -2 -2 -3 -3 -3 -3 -3 -3 -3 -3 -1 -1 0 0 0 0 0 0 0 0 0 -3 -3 0 6 6 -4 -4 -4 -4 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 1 3 3 -1 -1 -1 -1 -4 -4 -4 # P -1 -1 -1 -1 -2 -2 -2 -2 -2 -2 -2 -2 -1 -1 -3 -3 -1 -1 -1 -1 -2 -2 -2 -2 -2 -2 -3 -3 -3 -3 -3 -3 -3 -3 -3 -1 -1 -2 -4 -4 7 7 7 7 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4 -3 -3 -2 -2 -2 -2 -4 -4 -4 # S 1 1 1 1 -1 -1 -1 -1 -1 -1 1 1 0 0 -1 -1 0 0 0 0 0 0 0 0 -1 -1 -2 -2 -2 -2 -2 -2 -2 -2 -2 0 0 -1 -2 -2 -1 -1 -1 -1 4 4 4 4 4 4 1 1 1 1 -3 -2 -2 -2 -2 -2 -2 -4 -4 -4 # T 0 0 0 0 -1 -1 -1 -1 -1 -1 0 0 -1 -1 -1 -1 -1 -1 -1 -1 -2 -2 -2 -2 -2 -2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 1 1 1 1 1 1 5 5 5 5 -2 -2 -2 0 0 0 0 -4 -4 -4 # W -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -4 -4 -4 -4 -2 -2 -2 -2 -3 -3 -2 -2 -2 -2 -2 -2 -3 -3 -3 -2 -2 -2 -2 -2 -2 -3 -3 -1 1 1 -4 -4 -4 -4 -3 -3 -3 -3 -3 -3 -2 -2 -2 -2 11 2 2 -3 -3 -3 -3 -4 -4 -4 # Y -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 -3 -3 -2 -2 -1 -1 -2 -2 -3 -3 -3 -3 2 2 -1 -1 -1 -1 -1 -1 -1 -1 -1 -2 -2 -1 3 3 -3 -3 -3 -3 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 2 7 7 -1 -1 -1 -1 -4 -4 -4 # V 0 0 0 0 -3 -3 -3 -3 -3 -3 -3 -3 -3 -3 -1 -1 -2 -2 -2 -2 -3 -3 -3 -3 -3 -3 3 3 3 1 1 1 1 1 1 -2 -2 1 -1 -1 -2 -2 -2 -2 -2 -2 -2 -2 -2 -2 0 0 0 0 -3 -1 -1 4 4 4 4 -4 -4 -4 # B -2 -2 -2 -2 -1 -1 -1 -1 -1 -1 4 4 4 4 -3 -3 0 0 1 1 -1 -1 -1 -1 0 0 -3 -3 -3 -4 -4 -4 -4 -4 -4 0 0 -3 -3 -3 -2 -2 -2 -2 0 0 0 0 0 0 -1 -1 -1 -1 -4 -3 -3 -3 -3 -3 -3 -4 -4 -4 # J -1 -1 -1 -1 -2 -2 -2 -2 -2 -2 -3 -3 -3 -3 -1 -1 -2 -2 -3 -3 -4 -4 -4 -4 -3 -3 3 3 3 3 3 3 3 3 3 -3 -3 2 0 0 -3 -3 -3 -3 -2 -2 -2 -2 -2 -2 -1 -1 -1 -1 -2 -1 -1 2 2 2 2 -4 -4 -4 # Z -1 -1 -1 -1 0 0 0 0 0 0 0 0 1 1 -3 -3 4 4 4 4 -2 -2 -2 -2 0 0 -3 -3 -3 -3 -3 -3 -3 -3 -3 1 1 -1 -3 -3 -1 -1 -1 -1 0 0 0 0 0 0 -1 -1 -1 -1 -2 -2 -2 -2 -2 -2 -2 -4 -4 -4 # X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4 -4 -4 # * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 1 1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=48 s Q2LCP8 124 23 + 492 MetGluAlaHisAsnLeuIleThrLeuPheLeuSerLeuGluIleSerSerIleCysPheTyrIleLeu s S1_1 360 69 - 743 ATGGGATTTCATAATATGCGTTAATTGTTCTTTtttatatctCTGAGGGAAATATGTTTCTGGATTATT q S1_1 ~~C{@~ck~^~]Y~OW~k'S~pgfL}~G~cVj~FS~f<~u;RJ2=~kgoz~~a~lTPj@b~_U>{M;=* a score=39 s Q2LCP8 394 34 + 492 PheIleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMetIleTyrTyr s S1_1 395 102 - 743 tatatctCTGAGGGAAATATGTTTCTGGATTATTTTGCACTGGGAGTGCTTATTTTTGTATTTCTGGTGATATTCTATGGGATTATTATTTTAATGATATTC q S1_1 ~f<~u;RJ2=~kgoz~~a~lTPj@b~_U>{M;=*~fTLg~s]~~9TPO^~SL.~~J~~AS~L[t~~PlqF~~Yt~>EaMN.m~~O~W~E~Fdcpa{bYy}~U a score=36 s Q2LCP8 14 42 + 492 SerIleTyrIleLeuProLeuIleIleLeuIleValLeuSerIleSerIleLysLys------AspValGlnArgValHisIleIleIleGlnSerLeuLysLeuthrleuilevalilemetilevalile s S1_5 78 132 - 558 ACCATCACTCTTTTGAACCTAATCTTGCGTATACTCCTCTCATATCTGATAAGAGAAGTGATTATGGTTCAGCGTATTACTATTGCGCCGCAAGGCCCGAGTTTTCCCGTTTTGTATGGGCTACTGGCGATT q S1_5 [~nom~w=~j~~l~~PU~~~~5W]~~P~~Ut~r{~~UGrFP~gm~~{ja~ia[p^Of~F~~K?~v1ZIH~~|~~Bo[~RQaI7]ZdX~TM~1nV~g~pj~~Hq{v`nEkAaV~t;qa\FRxqfXvQ~b2rD[ a score=37 s Q2LCP8 384 11 + 492 TyrLeuAlaGlyLeuProProMetThrAsnPhe s S1_9 213 33 + 563 TACCTGGCTGCACTTCCGCCAGAGGCACGCTTT q S1_9 ~P~Wp{cI~r~~B6~~~Ski~~;mzH`~~H~~\ a score=36 s Q2LCP8 136 23 + 492 LeuGluIleSerSerIleCysPheTyrIleLeuAlaLeuAsnLysAsnSerArgLysGlyIleGluGly s S1_13 414 69 + 824 ATAACCATATCAACGGTGATGTTTCACATGTGTCGACTTAACCATGACAGCGTTCCTGTACTTCAGGGG q S1_13 I.JR9M]V/896>@:4N@5I1C4;NK-<%AGI4@E/;2A@?=:@*I8C.7H;2=:6(H03EG6?2'6M2>KD6:D98191A6&T;,-7*;:0&538K5&%EQ%; a score=39 s Q2LCP8 288 20 + 492 ThrIleGlySerLeuArgGlnGlnLysLeuIleArgPheIleAlaTyrSerAlaIleVal s S1_19 408 60 + 552 ACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTA q S1_19 ~Z~_~r~~\{^=~H|PJc?f[vhI~L~aOQxJnoZL~G~7q~~e=oz~~~RCG~S{z~?~ a score=38 s Q2LCP8 31 25 + 492 LysLysAspValGlnArgValHisIleIleIleGlnSerLeuLysLeuthrleuilevalilemetilevalile s S1_19 417 75 + 552 AAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATT q S1_19 {^=~H|PJc?f[vhI~L~aOQxJnoZL~G~7q~~e=oz~~~RCG~S{z~?~.~~o8Dj~0V~s~y~~~g~~~;~~ a score=42 s Q2LCP8 293 50 + 492 ArgGlnGlnLysLeuIleArgPheIleAlaTyrSerAlaIleValAsnSerAlaLeuLeuIleLeuMetLeuAlaGlySerMetSerGluGluLeuMetValAsnSerValTyrTyrLeuIleAsnTyrIleIleGlyLeuThrValLeu s S1_20 20 150 + 484 CGACGCGAGAGGAAATACCGCTGCCAGGCTTGTAGCGCAACAACAAATTATGCAATCGCTCTTCTTCAATCGGTTTCGCCAGATAATCGCTCATCCCTGCGCCAAGCAGCTTTCTTTTTGCCCGGCCATTGCATGCGCCTTACCGCGATA q S1_20 [SPs~x~PI~nr~~~~~kW1PCnK_TcYV~N`;L~u~mt~V~D~~~~fD~TZ~~T;9~^Ci[iZk4~DpYwuS~]EZB\c|slpK~`~fn@~~\<`^~V~Y~Cobfd~Zp~~~f[BSk?h<~P~;VFO:L~I@~gi3~.\T~FMOS;PmH a score=38 s Q2LCP8 206 19 + 492 GlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIleAlaPro s S1_24 77 57 - 251 GAAATTGGTGTCGCGGTAATCGACTGTGGCGGCACATTACGCTGCGGCATCTATCCG q S1_24 cx;ou~~~_~YH,S?e~V6P~~~o3^UI>~~~5i~Fa~vSGXWpk~wl~R~L~sW~l a score=39 s Q2LCP8 94 28 + 492 GluGluGlyValThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIleLeuIleTyrSerSerIleIleGlyMetLeu s S1_26 118 84 + 786 GAGGAGGCTGTTCGCAATAGTGAAAAAATGTCGTTGAGTGACAGCGAACTTGATGCGGCATTTTATGCTGTAATCGTCATGCTT q S1_26 ~m@~.~d}~=\~pen~F]~~~~dwIL~DtXMq~6Yv~mYv^cX~~v~~~yoe^~@W~uMm~]~~`O]Z~{~D~~~~Nl~~~=MC a score=39 s Q2LCP8 323 39 + 492 GluLeuMetValAsnSerValTyrTyrLeuIleAsnTyrIleIleGlyLeuThrValLeuMetSerLeuIleMetGlyPheLeuArgLeuAsnAspArgGlyThrIleGluAspIle s S1_26 297 117 + 786 GAGTTCTTTTTAAACTTGATAAATCATCGAATCGGGAAGTCAGCTGGATGGGTCTTTCTCCTGTGCCTGTTACTGGGTTTCAGAGGTAAATATTCCGTGGGTAGTAATGATGAAATC q S1_26 4j}`>\hzbJy~_W8~F~XYA~[Fk8G~~oF~K~~~~q~lot~1C7&JI58.YCWaaO5~A@EvMZLKND8QznFq$=SGLkJ=fJYeQ:~G/WL-N;D?/?HBN-9:TX`^?QECQ'; a score=36 s Q2LCP8 88 53 + 492 MetIleIleLysMetPheGluGluGlyValThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIleLeuIleTyrSerSerIleIleGlyMetLeuIleSerMetGluAlaHisAsnLeuIleThrLeuPheLeuSerLeuGluIleSerSer s S1_40 3 159 - 579 ATTCTGCTTTCGCTCGTCATTGGCGCCGTTACCTGTTTTCGCCGACTGCCGACAACGCTTGCTGGTCGCATTTATTCCTACGTAAGCATTATCGGCCATTTCAGCTTCCTGGTGTTCGCCACCTACTTGCTGATCCTCTTCCCGCTGACTTTATCGTCG q S1_40 P|N_kqaM3BuHMQ~H~IT~>`VdH,VHZ'O13q~HfOn\2W]HRScDMkG\Hp~1C7&JI58.YCWaaO5~A@EvMZLKND8QznFq$=SGLkJ=fJYeQ:~G/WL-N;D?HBN-9: a score=36 s Q2LCP8 309 22 + 492 SerAlaLeuLeuIleLeuMetLeuAlaGlySerMetSerGluGluLeuMetValAsnSerValTyr s S1_50 85 66 - 262 TCCGTTTGGTTTATTTTGCTCATCATAAGCCCCATGGCAGATGACATTTTGGTTACTGCAGAATAT q S1_50 6EnQIX3E=/MSL,-\OLQ>:FJ;,4^D9>>:P> a score=38 s Q2LCP8 422 28 + 492 GlyValMetIleTyrTyrMetAsnLeuValLysIleIleIleIleAspLys---ValGlnThrHisGluGlnGlyValAlaGluLeu s S1_54 177 87 + 662 GGCGCGATGATGCTGCAAGCGCCGCAGGTCGCCCTCATTGTGGATGACGAATTTATTCAAACGCATACCGTCGGCTTTGACGAGCTA q S1_54 )7=3354<2*3-3>=0/7.*F96,@71%BF*'6/64&504<.,.+)*%?3,=7,1D$$JCG*&55&4%&&M?0,5'1*1.(94)&(( a score=36 s Q2LCP8 183 11 + 492 SerThrGlySerLeuMetTyrThrAspLeuLeu s S1_54 23 33 + 662 TCTACAGGAACGTTGGCCTGGAGCGATTTACTG q S1_54 8/'67860,)-)'./:/'*C<'/11@'007/)' a score=36 s Q2LCP8 254 10 + 492 metvalleuileasnleutyrglnasnleu s S1_54 7 30 + 662 ATGATCGCCATCAATCTCTACAGGAACGTT q S1_54 7&-').206&(+B)+58/'67860,)-)'. a score=37 s Q2LCP8 251 50 + 492 valthrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGlnLysLeuIleArgPhe s S1_61 95 150 + 442 ATAACGCTTTCTGGGATTATTGCCGTTGGTATGACCTTTGTGATCCTCTCTGGCGGTATCGATCTCTCCGTCGGTTCGGTGATCGCTTTTACCGGCGTGTTTCTGGCAAAAGTGATTGGCGACTTCGGCCTCTCGCCGTTGCTGGCATTT q S1_61 \~Mb.~~y[Sn~~;l@~@bm3N_H9x?~~8~W~~hpaZ~l[Y~~^k~~tHla[}m_C`=:cs[~Ysnj~Z25w0~+Y~(~~YYA~wf~1X~Q~~~~amhD~jHUX3Uux:X`H`g}3~n~,S~~~~|RFJ[~{T,~V;G~~c?-~n~~g. a score=43 s Q2LCP8 205 72 + 492 IleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIleAlaProPheHisGlyTrpLeuIleAspValTyrGluGlyAlaGlyMetLeuMetThrPheTyrLeuThrIleThrGlnLysleuvalthrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleu s S1_67 215 207 - 496 CTGGAGCTGGCTATCAGCTCTGTAGTGCTCGCTGTAATCATCGGTTTAATTGGCGCT---------GGCGGTAAGCTCTCGCAAAATCGGCTTTCGGGGCTGATTTTCGAAGGGTACACCACGCTGATTCGAGGCGTGCCGGACTTGGTGTTGATGCTGCTGATTTTCTACGGTTTGCAGATTGCACTAAACACGGTGACGGAGGCGATGGGCGTC q S1_67 cT+aPL7Z~5W@:.E>SIT@KIq~I<`_D0f*GS{kc*E]~T>@N?VV~=WMC\OY;---------\?B~@IP3te1G^O^ICV:A]~bv~~yg3Ku]Br`:c~CQ2RWWPI@)t=ONfTx8/=bAo7\VN[YFj*E~KOJ@yOU^H>n~Q^W3UYjPW'~98{DqTgjMUwWMJJ:JY9F a score=37 s Q2LCP8 197 24 + 492 MetGluAsnThrAspAspTyrArgIleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeu s S1_68 178 72 + 460 CTCGACAGCACCGCCGACTACCCGCAACAGCCGGGTGTGGTGCTGATCAAAGTGCCGAAAACACTGGCATTG q S1_68 ~J{4P~MPxQU~{I~Oc~R~N~c~^g~y~0~~LS~K~~^h~wJdo~c~~z|~T~oa[V;[WwGS~~`~jn~V a score=44 s Q2LCP8 389 27 + 492 ProProMetThrAsnPheIleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgVal-TyrLeuThrMetLeu s S1_80 199 80 - 550 CCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAATT/TATTTACTGCTGATA q S1_80 ]RNv~v:~r~cJO~Us~Pq|~7~]~D:m}~`~i~~~8\~d~~~~MUSCrmKiV~YfbYH~~~_k~{/{buwAnE~~rX~~KB a score=41 s Q2LCP8 437 21 + 492 AspLysValGlnThrHisGluGlnGlyValAlaGluLeuGluIleThrSerLysProThrLys s S1_85 153 63 + 361 GATTCGGTAAAATCATCCCAGTTAACGCGCGCCAGGCTCGAAGTCATCAGCACGCCAACAAAG q S1_85 {:V>0J^U[P\4D>QA?C@]>9U54CBM='SK;)+OKoHe/X0I9^.IPD^C1O*;HD>36ZSL&K^H;ODH;*O1C^DPI.^9I0X/eHoKO+); a score=56 s Q2LCP8 395 44 + 492 IleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMet-IleTyrTyrMetAsnLeuValLysIleIleIleIleAspLys s S1_91 49 131 - 418 ATTTCTCGCTTCAGAATAGTAACTCCCGGGTTGATTTATGCTCGGGAATATTTGTTGTTGAGTTTTTGGTATGTTTCTGTTGGTATAATA/ATGTTGCGGCAATTTATTTGCCGCATAATTTTTATTCATAAA q S1_91 V1;>H>JC6:C2B%EC5?6CB~LCC4P.aK/SO:EA3Oi@HC]`GD8,PHJ<8+4$G*<);42516B.,K*6:6--I)IQTE3JK0&DCE/E7/):.(15?7IL>CT=%2Me9LG. a score=37 s Q2LCP8 44 14 + 492 LeuLysLeuthrleuilevalilemetilevalileGlyIle s S1_93 119 42 - 650 CTCAAAGCCATCCTGGTGATGATTATGGTGGTCATTGCGCTG q S1_93 ?_sI~R_lA`PhDjXLL>'am3:HU<5[W@3~THK~As~IS~J[DET_\~F~i~aAO~8m:D~~;p~~]L~GE9?~~oird]ra~} a score=41 s Q2LCP8 344 15 + 492 SerLeuIleMetGlyPheLeuArgLeuAsnAspArgGlyThrIle s S1_99 437 45 + 621 ACCCTGACGATGGGTTTCATGCCTGTAAATCCCCGGGCCACCATT q S1_99 BE>R;B61+*C9,QB%C[BJ?EL2HT;JEa48D4H-:*J=CaMHO # Query sequences=100 normal letters=45801 TEST lastal -Q1 -pbadcodon.mat -a17 -F0 -j4 -X1 -D1000 /tmp/last-test sd-ccs-100.fq lastal: quality data not used for DNA-versus-protein alignment # # a=17 b=2 A=17 B=2 F=0 e=56 d=45 x=55 y=43 z=55 D=1000 E=9.46738e+11 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.34294 j=4 Q=1 # /tmp/last-test # Reference sequences=1 normal letters=492 # lambda=0.215571 K=0.165586 # # GCC GCG GCA GCT TGC TGT GAC GAT GAG GAA TTC TTT GGC GGT GGA GGG CAC CAT ATC ATT ATA AAG AAA TTG TTA CTT CTA CTC CTG ATG AAC AAT CCC CCG CCA CCT CAG CAA AGG AGA CGG CGC CGT CGA TCC AGC TCG TCA TCT AGT ACC ACT ACA ACG GTC GTG GTT GTA TGG TAC TAT TAG TGA TAA # A 9 7 8 9 -9 -9 -1 -1 -5 -3 -4 -5 -1 -1 -2 -4 -9 -10 0 0 -1 -9 -7 -7 -5 -6 -6 -5 -9 -3 -5 -5 -1 -3 -2 -1 -14 -11 -8 -7 -13 -9 -9 -10 0 -5 -1 0 0 -5 5 4 4 3 5 1 5 4 -12 -8 -9 -11 -9 -9 # C -10 -17 -17 -10 12 12 -5 -5 -14 -13 1 1 0 1 -7 -8 1 1 -8 -8 -15 -13 -12 -7 -5 -4 -11 -4 -13 -16 -4 -4 -5 -12 -12 -5 -8 -6 -7 -6 -2 7 7 0 0 1 -6 -6 0 2 -9 -9 -16 -16 -9 -17 -9 -16 4 7 7 -1 6 0 # D 0 -7 -6 0 -3 -2 9 9 0 1 -8 -8 5 6 -2 -3 1 1 -3 -3 -10 -4 -3 -16 -14 -9 -16 -9 -18 -12 5 5 -10 -17 -16 -10 -9 -7 -7 -6 -12 -3 -3 -10 -9 1 -15 -15 -9 1 -4 -4 -11 -11 1 -7 2 -6 -10 2 2 -6 -9 -4 # E -8 2 1 -7 -11 -10 1 2 9 9 -16 -15 -3 -2 5 5 -7 -6 -12 -11 -3 4 4 -7 -7 -16 -8 -17 -9 -3 -3 -2 -18 -8 -9 -17 0 0 1 1 -4 -12 -10 -3 -17 -8 -7 -8 -16 -6 -12 -11 -4 -3 -7 1 -6 2 -2 -6 -5 2 -1 3 # F -5 -12 -12 -5 2 2 -10 -10 -19 -18 10 10 -10 -9 -17 -18 -3 -3 1 1 -6 -18 -16 2 4 5 -2 5 -4 -7 -8 -9 0 -7 -7 0 -13 -11 -17 -16 -12 -3 -3 -10 5 -9 -1 -1 5 -9 -4 -4 -11 -11 0 -8 0 -7 -6 2 2 -6 -4 -4 # G -2 -1 -1 -3 1 0 3 2 2 2 -10 -11 9 8 8 8 -5 -6 -5 -6 -5 -2 -2 -10 -9 -11 -10 -11 -12 -6 -1 -2 -12 -11 -11 -12 -7 -6 4 4 -1 0 0 0 -11 4 -9 -10 -12 3 -6 -7 -6 -5 -1 -1 -1 0 1 -4 -5 -4 2 -3 # H -10 -17 -17 -10 2 2 -1 -1 -10 -9 -3 -3 -5 -5 -12 -13 11 11 -8 -8 -15 -9 -8 -11 -9 1 -5 2 -8 -16 1 0 1 -7 -6 0 1 3 -12 -11 -2 7 7 0 -4 -4 -10 -10 -4 -4 -9 -9 -16 -16 -9 -17 -9 -16 -6 7 6 -1 -4 0 # I -1 -6 -4 -1 -8 -8 -6 -6 -13 -9 0 0 -6 -5 -9 -12 -9 -9 9 9 7 -7 -4 -5 -2 0 -3 0 -7 3 0 0 -6 -11 -8 -6 -16 -12 -7 -3 -15 -9 -8 -11 -5 -1 -9 -7 -5 0 4 4 2 -1 4 -2 4 2 -14 -8 -8 -14 -10 -10 # K -14 -4 -5 -12 -11 -10 -4 -3 3 3 -16 -15 -9 -7 0 0 -7 -6 -7 -6 1 9 9 -7 -7 -16 -8 -17 -9 1 1 2 -18 -8 -9 -17 0 0 5 5 -4 -12 -10 -3 -17 -3 -7 -8 -16 -2 -8 -7 0 2 -12 -4 -11 -4 -2 -6 -5 2 -1 3 # L -9 -4 -7 -9 -6 -5 -13 -13 -11 -13 3 3 -13 -13 -12 -10 -2 -2 -3 -3 -1 -10 -12 8 7 7 7 7 8 0 -12 -12 2 5 2 1 -1 -2 -9 -11 0 -2 -1 -1 -2 -12 4 1 -2 -12 -8 -8 -6 -3 -3 -1 -3 -2 -1 -5 -5 -1 -2 -2 # M -9 3 -2 -8 -16 -15 -13 -12 -4 -8 -7 -6 -13 -12 -8 -3 -16 -15 2 3 8 1 -3 3 0 -7 -2 -8 1 12 -8 -7 -13 -2 -7 -12 -8 -11 2 -2 -7 -16 -15 -10 -12 -8 0 -6 -11 -7 -4 -2 3 8 -3 6 -2 3 -5 -15 -14 -5 -9 -9 # N -5 -12 -12 -5 -3 -2 4 4 -5 -4 -8 -8 0 0 -8 -9 1 1 1 1 -6 0 1 -16 -14 -9 -16 -9 -18 -7 9 9 -10 -17 -16 -10 -9 -7 -3 -2 -12 -3 -3 -10 -9 5 -15 -15 -9 5 0 0 -7 -7 -4 -13 -4 -11 -10 2 2 -6 -9 -4 # P -2 -3 -1 -1 -4 -4 -11 -11 -15 -13 0 0 -12 -11 -12 -14 0 0 -5 -5 -5 -14 -11 -2 0 5 4 4 1 -8 -10 -10 9 7 9 9 -4 0 -13 -11 -3 0 1 0 4 -11 4 5 5 -10 -1 0 0 -2 -6 -9 -6 -6 -6 -4 -4 -6 -3 -3 # Q -18 -8 -10 -17 -6 -5 -9 -8 -1 -2 -11 -10 -13 -12 -6 -4 3 4 -16 -15 -8 1 -1 -2 -3 -6 1 -7 2 -7 -8 -7 -8 2 0 -7 11 10 -3 -5 7 -1 0 6 -12 -12 -1 -4 -11 -11 -17 -16 -9 -7 -17 -8 -16 -9 3 -2 -1 8 3 7 # R -13 -6 -7 -13 3 2 -8 -8 -4 -3 -8 -8 -2 -2 3 3 2 1 -9 -8 -1 1 2 -5 -5 -4 -2 -3 -3 -2 -4 -4 -4 -2 -3 -5 2 2 7 7 8 7 7 8 -9 1 -5 -6 -9 1 -10 -9 -2 -2 -12 -7 -12 -6 5 -2 -3 0 6 0 # S -3 -5 -4 -2 1 1 -3 -4 -12 -10 2 2 1 1 -6 -7 -4 -4 -1 -2 -5 -7 -6 -1 2 -2 -3 -2 -7 -8 2 1 2 -1 1 2 -10 -7 -2 -1 -8 0 -1 -5 7 7 5 7 7 6 0 0 -2 -3 -5 -10 -5 -7 -3 0 -1 -4 -1 -1 # T 3 2 3 3 -9 -9 -7 -7 -10 -8 -5 -5 -7 -7 -7 -9 -10 -10 4 4 4 -5 -2 -7 -4 -6 -6 -6 -9 1 -1 -1 -1 -3 -1 -1 -14 -10 -4 -2 -13 -10 -10 -10 0 -2 -1 0 0 -2 8 8 9 7 -1 -4 -1 -1 -11 -9 -9 -11 -8 -8 # V 2 5 3 2 -10 -10 -2 -2 -1 -3 -2 -2 -2 -2 -3 -1 -11 -11 3 3 3 -6 -7 1 -1 -2 -2 -3 -1 5 -7 -7 -8 -5 -7 -8 -10 -11 -5 -7 -10 -11 -10 -11 -7 -7 -3 -6 -7 -7 -2 -2 -2 1 7 9 8 8 -8 -10 -10 -8 -9 -9 # W -18 -7 -12 -17 3 5 -13 -12 -4 -8 -7 -6 -8 -7 -2 2 -7 -6 -16 -15 -10 -3 -7 3 0 -11 -6 -12 -3 -6 -12 -11 -13 -2 -7 -12 2 -1 3 -1 8 -1 0 5 -8 -7 4 -1 -7 -6 -17 -16 -11 -6 -17 -7 -16 -11 14 -2 -1 9 11 5 # Y -10 -17 -17 -10 6 6 -1 -1 -10 -9 1 1 -5 -5 -12 -13 6 6 -8 -8 -15 -9 -8 -7 -5 -4 -11 -4 -13 -16 1 0 -5 -12 -12 -5 -4 -2 -12 -11 -7 2 2 -6 0 -4 -6 -6 0 -4 -9 -9 -16 -16 -9 -17 -9 -16 -2 11 11 3 0 5 # * -18 -10 -8 -17 2 3 -11 -10 -4 -2 -7 -6 -10 -8 0 -4 -4 -3 -16 -15 -6 -3 -1 0 3 -11 -2 -12 -6 -10 -9 -8 -13 -5 -3 -12 2 4 -3 1 2 -3 -2 7 -8 -9 0 2 -7 -8 -17 -16 -7 -9 -17 -11 -16 -7 8 1 2 9 13 11 # X 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=59 EG2=5e+11 E=0.24 fullScore=69.8 s Q2LCP8 405 14 + 492 MetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePhe s S1_5 472 42 + 558 GTGATGGTTGCTCCGGTTCGTCTGATGACGCTGGCTTATTTC q S1_5 =w~mon~[~K~cI~Fj7~:rh'~~g~~aPi1VG~rfQh~~xt p """######%%%&&&,,,///666999>>>~~~~~~///+++ a score=72 EG2=3e+10 E=0.01 fullScore=85.5 s Q2LCP8 426 15 + 492 TyrTyrMetAsnLeuValLysIleIleIleIleAspLysValGln s S1_8 93 45 + 438 CGCAATAGGAGACTGATGTGAATCATCATGATTGATGAAATGCAG q S1_8 U;BEA:EK&E4%`=6+B;Q?P5cD,_@=1?JrKCXCQ@E39>=O&?6':;88NK---MWF4U*=B9E??a^T,A_ p $$$%%%'''...222~~~~~~DDD@@@;;;:::777***))),,,000000///---''''''&&&&&&%%%$$$ a score=56 EG2=9.5e+11 E=0.45 fullScore=68.3 s Q2LCP8 13 18 + 492 TyrSerIleTyrIleLeuPro------LeuIleIleLeuIleValLeuSerIleSerIle s S1_19 323 60 - 552 TACTTAATCCCCATTCTGCCCCCGCGGTTACGCTTTCTTATCTATTTTTCAATCAGCACT q S1_19 OnoBv^~~Dn~S~+{Zj~~Ksboh{.~~Xw~[~NP~UpQ~~~~~~~w[[j~E~m~|~\WN p +++...111222~~~~~~~~~###(((###%%%''')))******+++++++++)))&&& a score=61 EG2=3.2e+11 E=0.14 fullScore=68 s Q2LCP8 276 16 + 492 leuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySer s S1_21 109 48 - 510 CTGGTATTGGTGATTCTGACCATGCTGGCGGCAGTCACGACCGGTTCA q S1_21 8~d)A5S']cqHE\N[;@+Sc~>>;;;888666555222...''' a score=59 EG2=5e+11 E=0.21 fullScore=68.5 s Q2LCP8 404 13 + 492 TyrMetValLeuGlyArgValTyrLeuThrMetLeuAla s S1_21 100 39 - 510 CACCTGATGCTGGTATTGGTGATTCTGACCATGCTGGCG q S1_21 Ab~2M/?7;8~d)A5S']cqHE\N[;@+Sc~>>888333,,,+++,,,+++******)))''''''''''''&&& a score=62 EG2=2.6e+11 E=0.18 fullScore=77.5 s Q2LCP8 266 17 + 492 tyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuVal s S1_26 644 51 - 786 TTCACTATTGCGAACAGCCTCCTCAACAGGTTAATTATATTCTTTCTAGTA q S1_26 wd~~~~]F~nep~\=~}d~.~@m~X~yMF~cK~~o|M~{b~[~Pzv~~h7h p $$$'''((())))))))),,,---444999~~~~~~~~~333///---))) a score=67 EG2=8.8e+10 E=0.043 fullScore=77.7 s Q2LCP8 250 35 + 492 leuvalthrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuValThrLeu s S1_40 51 105 - 579 CCGACAACGCTTGCTGGTCGCATTTATTCCTACGTAAGCATTATCGGCCATTTCAGCTTCCTGGTGTTCGCCACCTACTTGCTGATCCTCTTCCCGCTGACTTTA q S1_40 MkG\Hp~1C7&JI58.YCWaaO5~A@EvMZLKND8QznFq$=SGLkJ=fJYeQ:~G/WL-N;D? p %%%(((~~~~~~666666:::@@@===;;;<<<666777222222222777666777444444:::>>>666444444444000111111000///---,,,((( a score=63 EG2=2.1e+11 E=0.1 fullScore=78.2 s Q2LCP8 271 27 + 492 metphethrasnglyleuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGlnLysLeu s S1_40 327 69 - 579 ATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAA---CTGGTGTTTGCGACG---------TGGAGCTGGCAAAAGCTG q S1_40 ^RJrHiP~l5eVT:Q\OQjqNK?M&JG8P_~k=mG[---B\L?OY4tXC:u.\Y---------DJ5H;rW=[RGacq~@,> p ~~~~~~BBB@@@<<<;;;666333,,,%%%$$$######((('''&&&%%%$$$%%%$$$$$$$$$%%%'''((((((''' a score=60 EG2=4e+11 E=0.2 fullScore=74.5 s Q2LCP8 280 16 + 492 IleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGln s S1_40 3 48 - 579 ATTCTGCTTTCGCTCGTCATTGGCGCCGTTACCTGTTTTCGCCGACTG q S1_40 P|N_kqaM3BuHMQ~H~IT~>`VdH,VHZ'O13q~HfOn\2W]HRScD p ~~~~~~======AAAAAA>>><<<444///---,,,,,,+++)))&&& a score=66 EG2=1.1e+11 E=0.053 fullScore=80.3 s Q2LCP8 384 31 + 492 TyrLeuAlaGlyLeuProProMetThrAsnPheIleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgValTyrLeuThrMet s S1_55 247 93 - 578 TGCTTTTTCTGCGTTCATTCAATGTCGAATGCGATGTTGACACGTCTTAtccttcaatgtcggatgcgacgctgccgcgtctATCCGACCACG q S1_55 325GA,4&47/FN+J9.6?*1S0L-?2<80+>@7>@AJX??)L5*>&)+ME:A9;:.&>&?=-%HAR'5)Z1-7;&8(6B,1M59B(,8%'LW p $$$$$$%%%%%%&&&(((,,,/////////---.........///~~~~~~~~~...,,,,,,...,,,...000555;;;:::555111+++ a score=56 EG2=9.5e+11 E=0.37 fullScore=67.3 s Q2LCP8 409 17 + 492 ArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMetIle s S1_68 38 51 - 460 AAAGTGCAATTAATCAGGCGCGCTTTTTTCCATGCCAGCGTAGTGGTGGTC q S1_68 Xgqc~{KG[?~`~CNo~~C]~^tDKvP~cwR~~Hi~ZYvLZxbNbUfnU~~ p %%%***,,,111444666888~~~~~~~~~((($$$############""" a score=57 EG2=7.6e+11 E=0.33 fullScore=65.6 s Q2LCP8 126 11 + 492 AlaHisAsnLeuIleThrLeuPheLeuSerLeu s S1_69 4 33 - 505 GTACACAGCGCGATTTCACCGTTCtcgtcgttg q S1_69 >=<<^A_CkT~jN/WM5-7>^V>>FFFFFF~~~~~~ a score=61 EG2=3.2e+11 E=0.17 fullScore=70.8 s Q2LCP8 229 13 + 492 LeuIleAspValTyrGluGlyAlaGlyMetLeuMetThr s S1_81 367 39 + 615 CTGGTTAACGTAGGCGCGGCGGCGGGGATGTTACCGACC q S1_81 ;8;xX&ML'60<%A23a;9KM>8B~-aAQ4]@O7@IF2> p (((+++///000000222333~~~~~~~~~~~~)))''' a score=57 EG2=7.6e+11 E=0.31 fullScore=66.2 s Q2LCP8 249 11 + 492 Lysleuvalthrleumetvalleuileasnleu s S1_84 311 33 + 484 AAAATGACTGCCCTGATGATCCTCATCACTCTG q S1_84 5~~u~Z~pA<~tm~`Y\xA~hM~YnayNlWA[~ p '''((()))---~~~~~~:::555111(((&&& a score=70 EG2=4.6e+10 E=0.013 fullScore=81.1 s Q2LCP8 447 11 + 492 AlaGluLeuGluIleThrSerLysProThrLys s S1_85 183 33 + 361 GCCAGGCTCGAAGTCATCAGCACGCCAACAAAG q S1_85 SK;)+OKoHe/X0I9^.IPD^C1O*;HD>'am3:HU<5[EaMN.m~~O~W~E~Fdcpa{bYy}~Uaf~YEIu~~J[~q~D_~~~o7~_Y0~j_jp~C\~~gxfl4~~sbFd~T~~M~~y3~e~~aQOaCJe~u~{d_ p $$$$$$$$$$$$$$$$$$%%%%%%%%%%%%%%%%%%&&&&&&'''***~~~~~~666222//////......***--"""#########-((()))))))))(((%%%%%%%%%%%%%%%%%%%%%$$$### a score=69.2 EG2=5.2e+11 E=0.29 s Q2LCP8 405 14 + 492 MetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePhe s S1_5 472 42 + 558 GTGATGGTTGCTCCGGTTCGTCTGATGACGCTGGCTTATTTC q S1_5 =w~mon~[~K~cI~Fj7~:rh'~~g~~aPi1VG~rfQh~~xt p #########%%%&&&,,,000666999@@@~~~~~~///+++ a score=85.7 EG2=1.2e+10 E=0.0051 s Q2LCP8 426 15 + 492 TyrTyrMetAsnLeuValLysIleIleIleIleAspLysValGln s S1_8 93 45 + 438 CGCAATAGGAGACTGATGTGAATCATCATGATTGATGAAATGCAG q S1_8 U;BEA:EK&E4%`=6+B;Q?P5cD,_@=1?JrKCXCQ@E3>>999444+++***(((''' a score=71.8 EG2=2.9e+11 E=0.085 s Q2LCP8 21 13 + 492 IleIleLeuIleValLeuSerIleSerIleLysLysAsp s S1_15 99 39 + 296 actgcttttattgTGTTGTTTATGTCAACTATAACAAAT q S1_15 ~H~~d~xl~Nw5~~LhE~~~~Q~~M]wXNQI~HA~q~[~ p ###%%%,,,~~~~~~~~~:::666222,,,(((&&&%%% a score=70.9 EG2=3.5e+11 E=0.1 s Q2LCP8 89 29 + 492 IleIleLysMetPheGluGluGlyValThrGluGlyLysLysThrLysIleThrAspGluGlyLeuIle---LeuIleTyrSerSerIle s S1_15 174 90 - 296 ATAAACAACACAATAAAAGCAGTTGcaataaaaaatgtgttaataaaaaTAAAAGACGAACAAATGATATTTTTGATTTTCTTATTGATT q S1_15 ~Q~~~~EhL~~5wN~lx~d~~H~=~~F~~M>5lJ~d~R~ITp\E~'Y~NkNDnK~C~J~~~HcBbs~~~I~I1p3B~~~A~3_{L-RbV~ p """"""#########&&&'''(((((()))************111~~~~~~<<<999222***(((&&&---&&&(((((('''&&&&&& a score=75.0 EG2=1.4e+11 E=0.087 s Q2LCP8 204 25 + 492 ArgIleGlnMetGlyIleAlaLeuIleValLeuGlyLeuIleLeuLysLeuGlyIleAlaProPheHisGlyTrp s S1_17 388 72 - 643 CGCGGTGAGACGGAAATAGCATCGACCGATCCGGGACCA---TTGAGGCCGAGGATCTGTTTATCACGTCGCCGG q S1_17 =7ACG23;8K*[O82;T89K==8,>9>=O&?6':;88NK---MWF4U*=B9E??a^T,A_ p $$$$$$&&&...111~~~~~~EEEAAA<<<;;;888***---,,,000000///---''''''&&&&&&%%%$$$ a score=69.7 EG2=4.7e+11 E=0.23 s Q2LCP8 287 11 + 492 GlyThrIleGlySerLeuArgGlnGlnLysLeu s S1_21 101 33 + 510 GGCACCATCAGCTCTTAGCAACGATAACAATCA q S1_21 1\:~LMgWKJGLNb4~'[M~T7O;+K6CJI0~h p ###&&&))),,,~~~~~~~~~~~~~~~ a score=84.7 EG2=1.5e+10 E=0.0085 s Q2LCP8 250 35 + 492 leuvalthrleumetvalleuileasnleutyrglnasnleuileiletyrthrasnalailemetphethrasnglyleuileIleLeuIleLeuValThrLeu s S1_40 51 105 - 579 CCGACAACGCTTGCTGGTCGCATTTATTCCTACGTAAGCATTATCGGCCATTTCAGCTTCCTGGTGTTCGCCACCTACTTGCTGATCCTCTTCCCGCTGACTTTA q S1_40 MkG\Hp~1C7&JI58.YCWaaO5~A@EvMZLKND8QznFq$=SGLkJ=fJYeQ:~G/WL-N;D? p %%%(((~~~~~~888888;;;BBB@@@>>>@@@999;;;555555444;;;:::;;;777777===CCC888777666666111222222111000...---((( a score=74.4 EG2=1.6e+11 E=0.09 s Q2LCP8 271 27 + 492 metphethrasnglyleuileIleLeuIleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGlnLysLeu s S1_40 327 69 - 579 ATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAA---CTGGTGTTTGCGACG---------TGGAGCTGGCAAAAGCTG q S1_40 ^RJrHiP~l5eVT:Q\OQjqNK?M&JG8P_~k=mG[---B\L?OY4tXC:u.\Y---------DJ5H;rW=[RGacq~@,> p ~~~~~~EEEBBB>>>===777444---%%%$$$###---''''''&&&%%%$$$---------###$$$%%%&&&&&&%%% a score=71.7 EG2=3e+11 E=0.17 s Q2LCP8 280 16 + 492 IleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGln s S1_40 3 48 - 579 ATTCTGCTTTCGCTCGTCATTGGCGCCGTTACCTGTTTTCGCCGACTG q S1_40 P|N_kqaM3BuHMQ~H~IT~>`VdH,VHZ'O13q~HfOn\2W]HRScD p ~~~~~~@@@???CCCCCC???===444///,,,++++++)))'''%%% a score=79.3 EG2=5.1e+10 E=0.029 s Q2LCP8 384 31 + 492 TyrLeuAlaGlyLeuProProMetThrAsnPheIleSerLysIleLeuIleLeuLeuProTyrMetValLeuGlyArgValTyrLeuThrMet s S1_55 247 93 - 578 TGCTTTTTCTGCGTTCATTCAATGTCGAATGCGATGTTGACACGTCTTAtccttcaatgtcggatgcgacgctgccgcgtctATCCGACCACG q S1_55 325GA,4&47/FN+J9.6?*1S0L-?2<80+>@7>@AJX??)L5*>&)+ME:A9;:.&>&?=-%HAR'5)Z1-7;&8(6B,1M59B(,8%'LW p $$$$$$$$$%%%&&&(((,,,/////////.../////////000~~~~~~~~~000......///...000222777>>>===888333+++ a score=66.4 EG2=9.9e+11 E=0.45 s Q2LCP8 409 17 + 492 ArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMetIle s S1_68 38 51 - 460 AAAGTGCAATTAATCAGGCGCGCTTTTTTCCATGCCAGCGTAGTGGTGGTC q S1_68 Xgqc~{KG[?~`~CNo~~C]~^tDKvP~cwR~~Hi~ZYvLZxbNbUfnU~~ p %%%***,,,111444666888~~~~~~~~~)))$$$######$$$###""" a score=70.3 EG2=4e+11 E=0.24 s Q2LCP8 229 13 + 492 LeuIleAspValTyrGluGlyAlaGlyMetLeuMetThr s S1_81 367 39 + 615 CTGGTTAACGTAGGCGCGGCGGCGGGGATGTTACCGACC q S1_81 ;8;xX&ML'60<%A23a;9KM>8B~-aAQ4]@O7@IF2> p (((+++...111111333555~~~~~~~~~~~~***((( a score=78.7 EG2=5.9e+10 E=0.021 s Q2LCP8 447 11 + 492 AlaGluLeuGluIleThrSerLysProThrLys s S1_85 183 33 + 361 GCCAGGCTCGAAGTCATCAGCACGCCAACAAAG q S1_85 SK;)+OKoHe/X0I9^.IPD^C1O*;HD>>>AAAFFFFFF~~~~~~~~~ a score=67.0 EG2=8.7e+11 E=0.31 s Q2LCP8 236 10 + 492 AlaGlyMetLeuMetThrPheTyrLeuThr s S1_85 149 30 - 361 GTTGGCGTGCTGATGACTTCGAGCCTGGCG q S1_85 >DH;*O1C^DPI.^9I0X/eHoKO+);KS' p ###(((---~~~~~~~~~+++)))((($$$ a score=67.7 EG2=7.4e+11 E=0.21 s Q2LCP8 183 10 + 492 SerThrGlySerLeuMetTyrThrAspLeu s S1_92 157 30 + 283 CCCATTGGCCTGTTGATGTATGCCAATCTG q S1_92 8AFN8I??GG](>Q=CNG/G>@(;^X49RH p $$$(((,,,,,,~~~~~~~~~777222*** a score=66.7 EG2=9.4e+11 E=0.6 s Q2LCP8 44 12 + 492 LeuLysLeuthrleuilevalilemetilevalile s S1_93 119 36 - 650 CTCAAAGCCATCCTGGTGATGATTATGGTGGTCATT q S1_93 ?_sI~R_lA`PhDjXLL>'am3:HU<5[=8776655654/-,))((''''&&% a score=67.4 s Q2LCP8 176 14 + 492 GIVSIYKSTGSLMY s S1_26 537 42 + 786 GIVAVYFVVLSMIY p ~~~?<90/...-,* a score=65.2 s Q2LCP8 394 14 + 492 FISKILILLPYMVL s S1_26 709 42 + 786 WISVILVTLPLNLL p (~~::97442)('& a score=63.1 s Q2LCP8 98 39 + 492 TEGKKTKITDEGLILIYSSIIGMLISME--AHNLITLFLSL s S1_26 483 116 + 786 TQGKKV*IIEAWFLFITCGIVAVYFVV-/FIHDLYEMILCL p /4~~~*''&%$##########"""!!!---""""""""""" a score=62.0 s Q2LCP8 133 13 + 492 FLSLEISSICFYI s S1_26 628 39 + 786 FVSVFVLSVCYVI p ~<8321111/$## a score=61.6 s Q2LCP8 323 39 + 492 ELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDI s S1_26 297 117 + 786 EFFLNLINHRIGKSAGWVFLLCLLLGFRGKYSVGSNDEI p &&'())********+,,-.2458:=~~'%$$$$$#"""" a score=60.7 s Q2LCP8 90 25 + 492 IKMFEEGVTEGKKTKITDEGLILIY s S1_26 455 75 + 786 VAIAKETIFHSGKKSINHRGLVSIY p """""""""""""##&((,~~/*)( a score=59.6 s Q2LCP8 359 30 + 492 EDIYQLKNMWVINMFGAIVYILVLMYLAGL s S1_26 583 90 + 786 DDFMLKKTFSLFLWFFVSVFVLSVCYVIGV p )~'&%%%$$$$$$%(()*-./.----+*)% a score=58.6 s Q2LCP8 394 19 + 492 FISKILILLPYMVLGRVYL s S1_26 525 57 + 786 FITCGIVAVYFVVLSMIYM p ~~/******+-/011/.-' a score=57.8 s Q2LCP8 333 16 + 492 INYIIGLTVLMSLIMG s S1_26 673 48 - 786 VNYILSSTVVITIFFG p )~~~>989741/.,+* a score=58.7 s Q2LCP8 246 33 + 492 ITQKlvtlmvlinlyqnliiytnaimftngliI s S1_36 117 99 - 604 LTASALNL*SNVGFFCSLLAPSDAILFQEGVSV p "####$$$$$$%&'()+,--.04~~?;432+(' a score=56.4 s Q2LCP8 135 21 + 492 SLEISSICFYILALNKNSRKG s S1_40 89 63 + 579 SAQIYTTCEAIKAINKNAASG p &')**,.22367>;62*'$##"! a score=56.5 s Q2LCP8 59 31 + 492 ESIYVKLNGHLIKTELIKLFEYLLLGVSYMI s S1_40 174 93 - 579 DEVFVRHSGTAGMTLLLIDSEVLLVSISILI p %',/00001/.-./---,,.47~~8541+*( a score=62.6 s Q2LCP8 211 31 + 492 LIVLGLILKLGIAPFHGW---LIDVYEGAGMLMT s S1_61 233 98 + 442 LLAFPLVLVMGCAFAHLW/GLLIDALKIPAFIIT p ###$$$%%%$$##""""!---~~~+'&%$$$$$$ a score=57.0 s Q2LCP8 251 50 + 492 vtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRF s S1_61 95 150 + 442 ITLSGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVIGDFGLSPLLAF p (~~533310002367665452221310/,+*)*****+++(&&%%%%$## a score=73.1 s Q2LCP8 205 72 + 492 IQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngl s S1_67 215 207 - 496 LELAISSVVLAVIIGLIGA---GGKLSQNRLSGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNTVTEAMGV p &)+-0016~~1-+&$#"!!---###$$%&'(*/12233867521//...----,---..--,++*(%####" a score=56.2 s Q2LCP8 299 15 + 492 RFIAYSAIVNSALLI s S1_67 446 45 - 496 RWYYYSSVLSTVLIL p %&&(~~3.,)(&%$# a score=61.7 s Q2LCP8 197 24 + 492 MENTDDYRIQMGIALIVLGLILKL s S1_68 178 72 + 460 LDSTADYPQQPGVVLIKVPKTLAL p *.157~~6576730.+'&$$###" a score=56.5 s Q2LCP8 389 22 + 492 PPMTNFISKILILLPYMVLGRV s S1_80 199 66 - 550 PPTARFVAEYSIQLSYGCIGKI p ~~:9:=74322556660/.-)$ a score=58.6 s Q2LCP8 40 26 + 492 IIQSLKLtlivimiviGIEESIYVKL s S1_82 384 78 - 636 LVAQFHLLKVVMLLVSGILDVVHAGL p $%%%&'(()+,-./12~~20-+(%$# a score=63.4 s Q2LCP8 204 47 + 492 RIQMGIALIVLGLILKLGI-APFHGWLIDVYEGAGMLMTFYLTITQKl s S1_85 34 142 - 361 RCRTGLTAVVVGVMFLLVM\SSHRGGMVPPYATAGALIFVGVLMTSSL p ~<;;=9545532*('&%#"-"###%%'())...//-,*(('('((&%% a score=78.1 s Q2LCP8 395 30 + 492 ISKILILLPYMVLGRVYLTMLAFFLSVGVM s S1_91 49 90 - 418 ISRFRIVTPGLIYAREYLLLSFWYVSVGII p '()*+/13658989;9;4.-,,-05~~~+% a score=65.4 s Q2LCP8 344 15 + 492 SLIMGFLRLNDRGTI s S1_99 437 45 + 621 TLTMGFMPVNPRATI p &+/~~~?:<=8731, # Query sequences=100 normal letters=45801 >Q2LCP8 MVCLFENLMNMIKYSIYILPLIILIVLSISIKKDVQRVHIIIQSLKLtlivimiviGIEESIYVKLNGHLIKTELIKLFEYLLLGVSYMIIKMFEEGVTEGKKTKITDEGLILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDIYQLKNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLAFFLSVGVMIYYMNLVKIIIIDKVQTHEQGVAELEITSKPTKGGRRIVLGVMWLIFSQLYLDEILNVIKVIVALI* TEST lastal -Q1 -pbadcodon.mat -a17 -b1 -F9,9,9,9 -X1 -D1e3 /tmp/last-test sd-ccs-100.fq lastal: quality data not used for DNA-versus-protein alignment # # a=17 b=1 A=17 B=1 F=9,9,9,9 e=66.3236 d=45 x=66 y=43 z=66 D=1000 E=1.01626e+12 # R=01 u=2 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.34294 j=3 Q=1 # /tmp/last-test # Reference sequences=1 normal letters=492 # lambda=0.230259 K=4.35887 # # GCC GCG GCA GCT TGC TGT GAC GAT GAG GAA TTC TTT GGC GGT GGA GGG CAC CAT ATC ATT ATA AAG AAA TTG TTA CTT CTA CTC CTG ATG AAC AAT CCC CCG CCA CCT CAG CAA AGG AGA CGG CGC CGT CGA TCC AGC TCG TCA TCT AGT ACC ACT ACA ACG GTC GTG GTT GTA TGG TAC TAT TAG TGA TAA # A 9 7 8 9 -9 -9 -1 -1 -5 -3 -4 -5 -1 -1 -2 -4 -9 -10 0 0 -1 -9 -7 -7 -5 -6 -6 -5 -9 -3 -5 -5 -1 -3 -2 -1 -14 -11 -8 -7 -13 -9 -9 -10 0 -5 -1 0 0 -5 5 4 4 3 5 1 5 4 -12 -8 -9 -11 -9 -9 # C -10 -17 -17 -10 12 12 -5 -5 -14 -13 1 1 0 1 -7 -8 1 1 -8 -8 -15 -13 -12 -7 -5 -4 -11 -4 -13 -16 -4 -4 -5 -12 -12 -5 -8 -6 -7 -6 -2 7 7 0 0 1 -6 -6 0 2 -9 -9 -16 -16 -9 -17 -9 -16 4 7 7 -1 6 0 # D 0 -7 -6 0 -3 -2 9 9 0 1 -8 -8 5 6 -2 -3 1 1 -3 -3 -10 -4 -3 -16 -14 -9 -16 -9 -18 -12 5 5 -10 -17 -16 -10 -9 -7 -7 -6 -12 -3 -3 -10 -9 1 -15 -15 -9 1 -4 -4 -11 -11 1 -7 2 -6 -10 2 2 -6 -9 -4 # E -8 2 1 -7 -11 -10 1 2 9 9 -16 -15 -3 -2 5 5 -7 -6 -12 -11 -3 4 4 -7 -7 -16 -8 -17 -9 -3 -3 -2 -18 -8 -9 -17 0 0 1 1 -4 -12 -10 -3 -17 -8 -7 -8 -16 -6 -12 -11 -4 -3 -7 1 -6 2 -2 -6 -5 2 -1 3 # F -5 -12 -12 -5 2 2 -10 -10 -19 -18 10 10 -10 -9 -17 -18 -3 -3 1 1 -6 -18 -16 2 4 5 -2 5 -4 -7 -8 -9 0 -7 -7 0 -13 -11 -17 -16 -12 -3 -3 -10 5 -9 -1 -1 5 -9 -4 -4 -11 -11 0 -8 0 -7 -6 2 2 -6 -4 -4 # G -2 -1 -1 -3 1 0 3 2 2 2 -10 -11 9 8 8 8 -5 -6 -5 -6 -5 -2 -2 -10 -9 -11 -10 -11 -12 -6 -1 -2 -12 -11 -11 -12 -7 -6 4 4 -1 0 0 0 -11 4 -9 -10 -12 3 -6 -7 -6 -5 -1 -1 -1 0 1 -4 -5 -4 2 -3 # H -10 -17 -17 -10 2 2 -1 -1 -10 -9 -3 -3 -5 -5 -12 -13 11 11 -8 -8 -15 -9 -8 -11 -9 1 -5 2 -8 -16 1 0 1 -7 -6 0 1 3 -12 -11 -2 7 7 0 -4 -4 -10 -10 -4 -4 -9 -9 -16 -16 -9 -17 -9 -16 -6 7 6 -1 -4 0 # I -1 -6 -4 -1 -8 -8 -6 -6 -13 -9 0 0 -6 -5 -9 -12 -9 -9 9 9 7 -7 -4 -5 -2 0 -3 0 -7 3 0 0 -6 -11 -8 -6 -16 -12 -7 -3 -15 -9 -8 -11 -5 -1 -9 -7 -5 0 4 4 2 -1 4 -2 4 2 -14 -8 -8 -14 -10 -10 # K -14 -4 -5 -12 -11 -10 -4 -3 3 3 -16 -15 -9 -7 0 0 -7 -6 -7 -6 1 9 9 -7 -7 -16 -8 -17 -9 1 1 2 -18 -8 -9 -17 0 0 5 5 -4 -12 -10 -3 -17 -3 -7 -8 -16 -2 -8 -7 0 2 -12 -4 -11 -4 -2 -6 -5 2 -1 3 # L -9 -4 -7 -9 -6 -5 -13 -13 -11 -13 3 3 -13 -13 -12 -10 -2 -2 -3 -3 -1 -10 -12 8 7 7 7 7 8 0 -12 -12 2 5 2 1 -1 -2 -9 -11 0 -2 -1 -1 -2 -12 4 1 -2 -12 -8 -8 -6 -3 -3 -1 -3 -2 -1 -5 -5 -1 -2 -2 # M -9 3 -2 -8 -16 -15 -13 -12 -4 -8 -7 -6 -13 -12 -8 -3 -16 -15 2 3 8 1 -3 3 0 -7 -2 -8 1 12 -8 -7 -13 -2 -7 -12 -8 -11 2 -2 -7 -16 -15 -10 -12 -8 0 -6 -11 -7 -4 -2 3 8 -3 6 -2 3 -5 -15 -14 -5 -9 -9 # N -5 -12 -12 -5 -3 -2 4 4 -5 -4 -8 -8 0 0 -8 -9 1 1 1 1 -6 0 1 -16 -14 -9 -16 -9 -18 -7 9 9 -10 -17 -16 -10 -9 -7 -3 -2 -12 -3 -3 -10 -9 5 -15 -15 -9 5 0 0 -7 -7 -4 -13 -4 -11 -10 2 2 -6 -9 -4 # P -2 -3 -1 -1 -4 -4 -11 -11 -15 -13 0 0 -12 -11 -12 -14 0 0 -5 -5 -5 -14 -11 -2 0 5 4 4 1 -8 -10 -10 9 7 9 9 -4 0 -13 -11 -3 0 1 0 4 -11 4 5 5 -10 -1 0 0 -2 -6 -9 -6 -6 -6 -4 -4 -6 -3 -3 # Q -18 -8 -10 -17 -6 -5 -9 -8 -1 -2 -11 -10 -13 -12 -6 -4 3 4 -16 -15 -8 1 -1 -2 -3 -6 1 -7 2 -7 -8 -7 -8 2 0 -7 11 10 -3 -5 7 -1 0 6 -12 -12 -1 -4 -11 -11 -17 -16 -9 -7 -17 -8 -16 -9 3 -2 -1 8 3 7 # R -13 -6 -7 -13 3 2 -8 -8 -4 -3 -8 -8 -2 -2 3 3 2 1 -9 -8 -1 1 2 -5 -5 -4 -2 -3 -3 -2 -4 -4 -4 -2 -3 -5 2 2 7 7 8 7 7 8 -9 1 -5 -6 -9 1 -10 -9 -2 -2 -12 -7 -12 -6 5 -2 -3 0 6 0 # S -3 -5 -4 -2 1 1 -3 -4 -12 -10 2 2 1 1 -6 -7 -4 -4 -1 -2 -5 -7 -6 -1 2 -2 -3 -2 -7 -8 2 1 2 -1 1 2 -10 -7 -2 -1 -8 0 -1 -5 7 7 5 7 7 6 0 0 -2 -3 -5 -10 -5 -7 -3 0 -1 -4 -1 -1 # T 3 2 3 3 -9 -9 -7 -7 -10 -8 -5 -5 -7 -7 -7 -9 -10 -10 4 4 4 -5 -2 -7 -4 -6 -6 -6 -9 1 -1 -1 -1 -3 -1 -1 -14 -10 -4 -2 -13 -10 -10 -10 0 -2 -1 0 0 -2 8 8 9 7 -1 -4 -1 -1 -11 -9 -9 -11 -8 -8 # V 2 5 3 2 -10 -10 -2 -2 -1 -3 -2 -2 -2 -2 -3 -1 -11 -11 3 3 3 -6 -7 1 -1 -2 -2 -3 -1 5 -7 -7 -8 -5 -7 -8 -10 -11 -5 -7 -10 -11 -10 -11 -7 -7 -3 -6 -7 -7 -2 -2 -2 1 7 9 8 8 -8 -10 -10 -8 -9 -9 # W -18 -7 -12 -17 3 5 -13 -12 -4 -8 -7 -6 -8 -7 -2 2 -7 -6 -16 -15 -10 -3 -7 3 0 -11 -6 -12 -3 -6 -12 -11 -13 -2 -7 -12 2 -1 3 -1 8 -1 0 5 -8 -7 4 -1 -7 -6 -17 -16 -11 -6 -17 -7 -16 -11 14 -2 -1 9 11 5 # Y -10 -17 -17 -10 6 6 -1 -1 -10 -9 1 1 -5 -5 -12 -13 6 6 -8 -8 -15 -9 -8 -7 -5 -4 -11 -4 -13 -16 1 0 -5 -12 -12 -5 -4 -2 -12 -11 -7 2 2 -6 0 -4 -6 -6 0 -4 -9 -9 -16 -16 -9 -17 -9 -16 -2 11 11 3 0 5 # * -18 -10 -8 -17 2 3 -11 -10 -4 -2 -7 -6 -10 -8 0 -4 -4 -3 -16 -15 -6 -3 -1 0 3 -11 -2 -12 -6 -10 -9 -8 -13 -5 -3 -12 2 4 -3 1 2 -3 -2 7 -8 -9 0 2 -7 -8 -17 -16 -7 -9 -17 -11 -16 -7 8 1 2 9 13 11 # X 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=69.2 EG2=5.2e+11 E=0.29 s Q2LCP8 405 14 + 492 MetValLeuGlyArgValTyrLeuThrMetLeuAlaPhePhe s S1_5 472 42 + 558 GTGATGGTTGCTCCGGTTCGTCTGATGACGCTGGCTTATTTC q S1_5 =w~mon~[~K~cI~Fj7~:rh'~~g~~aPi1VG~rfQh~~xt a score=85.7 EG2=1.2e+10 E=0.0051 s Q2LCP8 426 15 + 492 TyrTyrMetAsnLeuValLysIleIleIleIleAspLysValGln s S1_8 93 45 + 438 CGCAATAGGAGACTGATGTGAATCATCATGATTGATGAAATGCAG q S1_8 U;BEA:EK&E4%`=6+B;Q?P5cD,_@=1?JrKCXCQ@E39>=O&?6':;88NK---MWF4U*=B9E??a^T,A_ a score=71.5 EG2=3.1e+11 E=0.16 s Q2LCP8 404 13 + 492 TyrMetValLeuGlyArgValTyrLeuThrMetLeuAla s S1_21 100 39 - 510 CACCTGATGCTGGTATTGGTGATTCTGACCATGCTGGCG q S1_21 Ab~2M/?7;8~d)A5S']cqHE\N[;@+Sc~~h a score=71.6 EG2=3e+11 E=0.17 s Q2LCP8 280 16 + 492 IleLeuValThrLeuValValGlyThrIleGlySerLeuArgGlnGln s S1_40 3 48 - 579 ATTCTGCTTTCGCTCGTCATTGGCGCCGTTACCTGTTTTCGCCGACTG q S1_40 P|N_kqaM3BuHMQ~H~IT~>`VdH,VHZ'O13q~HfOn\2W]HRScD a score=66.4 EG2=9.9e+11 E=0.45 s Q2LCP8 409 17 + 492 ArgValTyrLeuThrMetLeuAlaPhePheLeuSerValGlyValMetIle s S1_68 38 51 - 460 AAAGTGCAATTAATCAGGCGCGCTTTTTTCCATGCCAGCGTAGTGGTGGTC q S1_68 Xgqc~{KG[?~`~CNo~~C]~^tDKvP~cwR~~Hi~ZYvLZxbNbUfnU~~ a score=69.1 EG2=5.4e+11 E=0.32 s Q2LCP8 229 13 + 492 LeuIleAspValTyrGluGlyAlaGlyMetLeuMetThr s S1_81 367 39 + 615 CTGGTTAACGTAGGCGCGGCGGCGGGGATGTTACCGACC q S1_81 ;8;xX&ML'60<%A23a;9KM>8B~-aAQ4]@O7@IF2> a score=78.7 EG2=5.9e+10 E=0.021 s Q2LCP8 447 11 + 492 AlaGluLeuGluIleThrSerLysProThrLys s S1_85 183 33 + 361 GCCAGGCTCGAAGTCATCAGCACGCCAACAAAG q S1_85 SK;)+OKoHe/X0I9^.IPD^C1O*;HD>Q=CNG/G>@(;^X49RH # Query sequences=100 normal letters=45801 TEST lastal -fBlastTab -pBL62 -b1 -F15 -D1e3 /tmp/last-test galGal3-M-32.fa # # a=11 b=1 A=11 B=1 F=15 e=36 d=29 x=35 y=31 z=35 D=1000 E=9.29879e+11 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=491 # lambda=0.314572 K=0.0770249 # # A R N D C Q E G H I L K M F P S T W Y V B J Z X * # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4 # R -1 5 0 -2 -3 1 0 -2 0 -3 -2 2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2 0 -1 -4 # N -2 0 6 1 -3 0 0 0 1 -3 -3 0 -2 -3 -2 1 0 -4 -2 -3 4 -3 0 -1 -4 # D -2 -2 1 6 -3 0 2 -1 -1 -3 -4 -1 -3 -3 -1 0 -1 -4 -3 -3 4 -3 1 -1 -4 # C 0 -3 -3 -3 9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4 # Q -1 1 0 0 -3 5 2 -2 0 -3 -2 1 0 -3 -1 0 -1 -2 -1 -2 0 -2 4 -1 -4 # E -1 0 0 2 -4 2 5 -2 0 -3 -3 1 -2 -3 -1 0 -1 -3 -2 -2 1 -3 4 -1 -4 # G 0 -2 0 -1 -3 -2 -2 6 -2 -4 -4 -2 -3 -3 -2 0 -2 -2 -3 -3 -1 -4 -2 -1 -4 # H -2 0 1 -1 -3 0 0 -2 8 -3 -3 -1 -2 -1 -2 -1 -2 -2 2 -3 0 -3 0 -1 -4 # I -1 -3 -3 -3 -1 -3 -3 -4 -3 4 2 -3 1 0 -3 -2 -1 -3 -1 3 -3 3 -3 -1 -4 # L -1 -2 -3 -4 -1 -2 -3 -4 -3 2 4 -2 2 0 -3 -2 -1 -2 -1 1 -4 3 -3 -1 -4 # K -1 2 0 -1 -3 1 1 -2 -1 -3 -2 5 -1 -3 -1 0 -1 -3 -2 -2 0 -3 1 -1 -4 # M -1 -1 -2 -3 -1 0 -2 -3 -2 1 2 -1 5 0 -2 -1 -1 -1 -1 1 -3 2 -1 -1 -4 # F -2 -3 -3 -3 -2 -3 -3 -3 -1 0 0 -3 0 6 -4 -2 -2 1 3 -1 -3 0 -3 -1 -4 # P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4 7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4 # S 1 -1 1 0 -1 0 0 0 -1 -2 -2 0 -1 -2 -1 4 1 -3 -2 -2 0 -2 0 -1 -4 # T 0 -1 0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1 1 5 -2 -2 0 -1 -1 -1 -1 -4 # W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1 1 -4 -3 -2 11 2 -3 -4 -2 -2 -1 -4 # Y -2 -2 -2 -3 -2 -1 -2 -3 2 -1 -1 -2 -1 3 -3 -2 -2 2 7 -1 -3 -1 -2 -1 -4 # V 0 -3 -3 -3 -1 -2 -2 -3 -3 3 1 -2 1 -1 -2 -2 0 -3 -1 4 -3 2 -2 -1 -4 # B -2 -1 4 4 -3 0 1 -1 0 -3 -4 0 -3 -3 -2 0 -1 -4 -3 -3 4 -3 0 -1 -4 # J -1 -2 -3 -3 -1 -2 -3 -4 -3 3 3 -3 2 0 -3 -2 -1 -2 -1 2 -3 3 -3 -1 -4 # Z -1 0 0 1 -3 4 4 -2 0 -3 -3 1 -1 -3 -1 0 -1 -2 -2 -2 0 -3 4 -1 -4 # X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4 # * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 1 # # Fields: query id, subject id, % identity, alignment length, mismatches, gap opens, q. start, q. end, s. start, s. end, evalue, bit score chrM Q2LCP8 24.22 322 211 8 5259 6128 111 431 2.6e-19 84.9 chrM Q2LCP8 27.27 88 60 2 11753 12007 102 188 0.0097 30.5 chrM Q2LCP8 32.00 50 30 2 13893 14033 171 219 0.034 28.7 chrM Q2LCP8 20.69 290 206 8 13446 14258 118 402 0.089 27.3 chrM Q2LCP8 22.53 182 122 5 12314 12811 293 471 0.32 25.5 chrM Q2LCP8 29.63 27 19 0 11768 11848 395 421 0.32 25.5 chrM Q2LCP8 20.61 262 171 10 13572 12843 113 353 0.44 25 chrM Q2LCP8 35.71 42 21 1 5607 5714 376 417 0.44 25 chrM Q2LCP8 55.00 20 8 1 7362 7306 203 222 1.1 23.7 chrM Q2LCP8 25.00 68 49 1 11678 11881 11 76 1.6 23.2 chrM Q2LCP8 16.98 53 44 0 13953 14111 32 84 1.6 23.2 chrM Q2LCP8 25.64 39 28 1 14081 14195 17 54 1.6 23.2 chrM Q2LCP8 23.08 39 26 2 7710 7823 315 350 1.6 23.2 chrM Q2LCP8 36.36 33 18 1 7065 7163 375 404 1.6 23.2 chrM Q2LCP8 22.99 87 56 4 15931 16185 404 481 2.1 22.8 chrM Q2LCP8 29.55 44 30 1 8445 8573 16 59 2.1 22.8 chrM Q2LCP8 41.67 24 14 0 55 126 167 190 2.1 22.8 chrM Q2LCP8 28.57 42 26 1 9224 9099 338 375 2.9 22.3 chrM Q2LCP8 20.59 34 27 0 16579 16478 1 34 2.9 22.3 chrM Q2LCP8 28.57 56 30 3 15331 15495 370 416 4 21.9 chrM Q2LCP8 40.00 20 12 0 14566 14507 407 426 4 21.9 chrM Q2LCP8 55.56 18 3 1 6123 6070 459 471 4 21.9 chrM Q2LCP8 25.93 81 50 2 6693 6914 160 237 5.5 21.4 chrM Q2LCP8 27.59 58 38 2 16660 16490 194 248 5.5 21.4 chrM Q2LCP8 27.16 81 48 4 9282 9497 208 286 7.6 20.9 chrM Q2LCP8 28.85 52 35 1 13083 13232 239 290 7.6 20.9 chrM Q2LCP8 30.00 30 21 0 16312 16223 110 139 7.6 20.9 chrM Q2LCP8 26.17 107 67 4 12449 12748 191 292 10 20.5 chrM Q2LCP8 27.59 58 38 1 11798 11959 164 221 10 20.5 chrM Q2LCP8 26.67 45 31 1 14562 14696 133 175 10 20.5 chrM Q2LCP8 31.43 35 20 1 10944 10840 154 184 10 20.5 chrM Q2LCP8 30.00 30 18 1 15928 15848 212 241 10 20.5 chrM Q2LCP8 29.63 27 18 1 9354 9277 141 167 10 20.5 chrM Q2LCP8 29.63 27 19 0 2512 2432 374 400 10 20.5 chrM Q2LCP8 38.10 21 13 0 9342 9280 51 71 10 20.5 chrM Q2LCP8 36.84 19 12 0 10031 10087 267 285 10 20.5 chrM Q2LCP8 33.33 18 12 0 16589 16536 368 385 10 20.5 chrM Q2LCP8 23.40 94 68 2 9651 9920 130 223 14 20 chrM Q2LCP8 21.57 51 33 1 13195 13064 193 243 14 20 chrM Q2LCP8 34.48 29 19 0 12881 12795 160 188 14 20 chrM Q2LCP8 34.78 23 14 1 10307 10239 157 178 14 20 chrM Q2LCP8 42.11 19 11 0 13299 13355 131 149 14 20 chrM Q2LCP8 47.06 17 8 1 12569 12522 277 293 14 20 chrM Q2LCP8 40.00 15 9 0 15562 15606 331 345 14 20 chrM Q2LCP8 50.00 12 6 0 8526 8561 18 29 14 20 chrM Q2LCP8 50.00 10 5 0 1314 1343 225 234 14 20 chr32 Q2LCP8 23.21 56 42 1 43 210 8 62 0.59 20.5 # Query sequences=2 normal letters=17803 TEST lastal -fBlastTab+ -pBL62 -b1 -F15 -D1e3 /tmp/last-test galGal3-M-32.fa # # a=11 b=1 A=11 B=1 F=15 e=36 d=29 x=35 y=31 z=35 D=1000 E=9.29879e+11 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=491 # lambda=0.314572 K=0.0770249 # # A R N D C Q E G H I L K M F P S T W Y V B J Z X * # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4 # R -1 5 0 -2 -3 1 0 -2 0 -3 -2 2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2 0 -1 -4 # N -2 0 6 1 -3 0 0 0 1 -3 -3 0 -2 -3 -2 1 0 -4 -2 -3 4 -3 0 -1 -4 # D -2 -2 1 6 -3 0 2 -1 -1 -3 -4 -1 -3 -3 -1 0 -1 -4 -3 -3 4 -3 1 -1 -4 # C 0 -3 -3 -3 9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4 # Q -1 1 0 0 -3 5 2 -2 0 -3 -2 1 0 -3 -1 0 -1 -2 -1 -2 0 -2 4 -1 -4 # E -1 0 0 2 -4 2 5 -2 0 -3 -3 1 -2 -3 -1 0 -1 -3 -2 -2 1 -3 4 -1 -4 # G 0 -2 0 -1 -3 -2 -2 6 -2 -4 -4 -2 -3 -3 -2 0 -2 -2 -3 -3 -1 -4 -2 -1 -4 # H -2 0 1 -1 -3 0 0 -2 8 -3 -3 -1 -2 -1 -2 -1 -2 -2 2 -3 0 -3 0 -1 -4 # I -1 -3 -3 -3 -1 -3 -3 -4 -3 4 2 -3 1 0 -3 -2 -1 -3 -1 3 -3 3 -3 -1 -4 # L -1 -2 -3 -4 -1 -2 -3 -4 -3 2 4 -2 2 0 -3 -2 -1 -2 -1 1 -4 3 -3 -1 -4 # K -1 2 0 -1 -3 1 1 -2 -1 -3 -2 5 -1 -3 -1 0 -1 -3 -2 -2 0 -3 1 -1 -4 # M -1 -1 -2 -3 -1 0 -2 -3 -2 1 2 -1 5 0 -2 -1 -1 -1 -1 1 -3 2 -1 -1 -4 # F -2 -3 -3 -3 -2 -3 -3 -3 -1 0 0 -3 0 6 -4 -2 -2 1 3 -1 -3 0 -3 -1 -4 # P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4 7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4 # S 1 -1 1 0 -1 0 0 0 -1 -2 -2 0 -1 -2 -1 4 1 -3 -2 -2 0 -2 0 -1 -4 # T 0 -1 0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1 1 5 -2 -2 0 -1 -1 -1 -1 -4 # W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1 1 -4 -3 -2 11 2 -3 -4 -2 -2 -1 -4 # Y -2 -2 -2 -3 -2 -1 -2 -3 2 -1 -1 -2 -1 3 -3 -2 -2 2 7 -1 -3 -1 -2 -1 -4 # V 0 -3 -3 -3 -1 -2 -2 -3 -3 3 1 -2 1 -1 -2 -2 0 -3 -1 4 -3 2 -2 -1 -4 # B -2 -1 4 4 -3 0 1 -1 0 -3 -4 0 -3 -3 -2 0 -1 -4 -3 -3 4 -3 0 -1 -4 # J -1 -2 -3 -3 -1 -2 -3 -4 -3 3 3 -3 2 0 -3 -2 -1 -2 -1 2 -3 3 -3 -1 -4 # Z -1 0 0 1 -3 4 4 -2 0 -3 -3 1 -1 -3 -1 0 -1 -2 -2 -2 0 -3 4 -1 -4 # X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4 # * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 1 # # Fields: query id, subject id, % identity, alignment length, mismatches, gap opens, q. start, q. end, s. start, s. end, evalue, bit score, query length, subject length, raw score chrM Q2LCP8 24.22 322 211 8 5259 6128 111 431 2.6e-19 84.9 16775 491 179 chrM Q2LCP8 27.27 88 60 2 11753 12007 102 188 0.0097 30.5 16775 491 59 chrM Q2LCP8 32.00 50 30 2 13893 14033 171 219 0.034 28.7 16775 491 55 chrM Q2LCP8 20.69 290 206 8 13446 14258 118 402 0.089 27.3 16775 491 52 chrM Q2LCP8 22.53 182 122 5 12314 12811 293 471 0.32 25.5 16775 491 48 chrM Q2LCP8 29.63 27 19 0 11768 11848 395 421 0.32 25.5 16775 491 48 chrM Q2LCP8 20.61 262 171 10 13572 12843 113 353 0.44 25 16775 491 47 chrM Q2LCP8 35.71 42 21 1 5607 5714 376 417 0.44 25 16775 491 47 chrM Q2LCP8 55.00 20 8 1 7362 7306 203 222 1.1 23.7 16775 491 44 chrM Q2LCP8 25.00 68 49 1 11678 11881 11 76 1.6 23.2 16775 491 43 chrM Q2LCP8 16.98 53 44 0 13953 14111 32 84 1.6 23.2 16775 491 43 chrM Q2LCP8 25.64 39 28 1 14081 14195 17 54 1.6 23.2 16775 491 43 chrM Q2LCP8 23.08 39 26 2 7710 7823 315 350 1.6 23.2 16775 491 43 chrM Q2LCP8 36.36 33 18 1 7065 7163 375 404 1.6 23.2 16775 491 43 chrM Q2LCP8 22.99 87 56 4 15931 16185 404 481 2.1 22.8 16775 491 42 chrM Q2LCP8 29.55 44 30 1 8445 8573 16 59 2.1 22.8 16775 491 42 chrM Q2LCP8 41.67 24 14 0 55 126 167 190 2.1 22.8 16775 491 42 chrM Q2LCP8 28.57 42 26 1 9224 9099 338 375 2.9 22.3 16775 491 41 chrM Q2LCP8 20.59 34 27 0 16579 16478 1 34 2.9 22.3 16775 491 41 chrM Q2LCP8 28.57 56 30 3 15331 15495 370 416 4 21.9 16775 491 40 chrM Q2LCP8 40.00 20 12 0 14566 14507 407 426 4 21.9 16775 491 40 chrM Q2LCP8 55.56 18 3 1 6123 6070 459 471 4 21.9 16775 491 40 chrM Q2LCP8 25.93 81 50 2 6693 6914 160 237 5.5 21.4 16775 491 39 chrM Q2LCP8 27.59 58 38 2 16660 16490 194 248 5.5 21.4 16775 491 39 chrM Q2LCP8 27.16 81 48 4 9282 9497 208 286 7.6 20.9 16775 491 38 chrM Q2LCP8 28.85 52 35 1 13083 13232 239 290 7.6 20.9 16775 491 38 chrM Q2LCP8 30.00 30 21 0 16312 16223 110 139 7.6 20.9 16775 491 38 chrM Q2LCP8 26.17 107 67 4 12449 12748 191 292 10 20.5 16775 491 37 chrM Q2LCP8 27.59 58 38 1 11798 11959 164 221 10 20.5 16775 491 37 chrM Q2LCP8 26.67 45 31 1 14562 14696 133 175 10 20.5 16775 491 37 chrM Q2LCP8 31.43 35 20 1 10944 10840 154 184 10 20.5 16775 491 37 chrM Q2LCP8 30.00 30 18 1 15928 15848 212 241 10 20.5 16775 491 37 chrM Q2LCP8 29.63 27 18 1 9354 9277 141 167 10 20.5 16775 491 37 chrM Q2LCP8 29.63 27 19 0 2512 2432 374 400 10 20.5 16775 491 37 chrM Q2LCP8 38.10 21 13 0 9342 9280 51 71 10 20.5 16775 491 37 chrM Q2LCP8 36.84 19 12 0 10031 10087 267 285 10 20.5 16775 491 37 chrM Q2LCP8 33.33 18 12 0 16589 16536 368 385 10 20.5 16775 491 37 chrM Q2LCP8 23.40 94 68 2 9651 9920 130 223 14 20 16775 491 36 chrM Q2LCP8 21.57 51 33 1 13195 13064 193 243 14 20 16775 491 36 chrM Q2LCP8 34.48 29 19 0 12881 12795 160 188 14 20 16775 491 36 chrM Q2LCP8 34.78 23 14 1 10307 10239 157 178 14 20 16775 491 36 chrM Q2LCP8 42.11 19 11 0 13299 13355 131 149 14 20 16775 491 36 chrM Q2LCP8 47.06 17 8 1 12569 12522 277 293 14 20 16775 491 36 chrM Q2LCP8 40.00 15 9 0 15562 15606 331 345 14 20 16775 491 36 chrM Q2LCP8 50.00 12 6 0 8526 8561 18 29 14 20 16775 491 36 chrM Q2LCP8 50.00 10 5 0 1314 1343 225 234 14 20 16775 491 36 chr32 Q2LCP8 23.21 56 42 1 43 210 8 62 0.59 20.5 1028 491 37 # Query sequences=2 normal letters=17803 TEST lastal -j4 -pBL62 -b1 -F0 -D1e3 /tmp/last-test galGal3-M-32.fa # # a=11 b=1 A=11 B=1 F=0 e=36 d=29 x=35 y=31 z=35 D=1000 E=8.72478e+11 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=3.08611 j=4 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=491 # lambda=0.321453 K=0.0925849 # # A R N D C Q E G H I L K M F P S T W Y V B J Z X * # A 4 -1 -2 -2 0 -1 -1 0 -2 -1 -1 -1 -1 -2 -1 1 0 -3 -2 0 -2 -1 -1 -1 -4 # R -1 5 0 -2 -3 1 0 -2 0 -3 -2 2 -1 -3 -2 -1 -1 -3 -2 -3 -1 -2 0 -1 -4 # N -2 0 6 1 -3 0 0 0 1 -3 -3 0 -2 -3 -2 1 0 -4 -2 -3 4 -3 0 -1 -4 # D -2 -2 1 6 -3 0 2 -1 -1 -3 -4 -1 -3 -3 -1 0 -1 -4 -3 -3 4 -3 1 -1 -4 # C 0 -3 -3 -3 9 -3 -4 -3 -3 -1 -1 -3 -1 -2 -3 -1 -1 -2 -2 -1 -3 -1 -3 -1 -4 # Q -1 1 0 0 -3 5 2 -2 0 -3 -2 1 0 -3 -1 0 -1 -2 -1 -2 0 -2 4 -1 -4 # E -1 0 0 2 -4 2 5 -2 0 -3 -3 1 -2 -3 -1 0 -1 -3 -2 -2 1 -3 4 -1 -4 # G 0 -2 0 -1 -3 -2 -2 6 -2 -4 -4 -2 -3 -3 -2 0 -2 -2 -3 -3 -1 -4 -2 -1 -4 # H -2 0 1 -1 -3 0 0 -2 8 -3 -3 -1 -2 -1 -2 -1 -2 -2 2 -3 0 -3 0 -1 -4 # I -1 -3 -3 -3 -1 -3 -3 -4 -3 4 2 -3 1 0 -3 -2 -1 -3 -1 3 -3 3 -3 -1 -4 # L -1 -2 -3 -4 -1 -2 -3 -4 -3 2 4 -2 2 0 -3 -2 -1 -2 -1 1 -4 3 -3 -1 -4 # K -1 2 0 -1 -3 1 1 -2 -1 -3 -2 5 -1 -3 -1 0 -1 -3 -2 -2 0 -3 1 -1 -4 # M -1 -1 -2 -3 -1 0 -2 -3 -2 1 2 -1 5 0 -2 -1 -1 -1 -1 1 -3 2 -1 -1 -4 # F -2 -3 -3 -3 -2 -3 -3 -3 -1 0 0 -3 0 6 -4 -2 -2 1 3 -1 -3 0 -3 -1 -4 # P -1 -2 -2 -1 -3 -1 -1 -2 -2 -3 -3 -1 -2 -4 7 -1 -1 -4 -3 -2 -2 -3 -1 -1 -4 # S 1 -1 1 0 -1 0 0 0 -1 -2 -2 0 -1 -2 -1 4 1 -3 -2 -2 0 -2 0 -1 -4 # T 0 -1 0 -1 -1 -1 -1 -2 -2 -1 -1 -1 -1 -2 -1 1 5 -2 -2 0 -1 -1 -1 -1 -4 # W -3 -3 -4 -4 -2 -2 -3 -2 -2 -3 -2 -3 -1 1 -4 -3 -2 11 2 -3 -4 -2 -2 -1 -4 # Y -2 -2 -2 -3 -2 -1 -2 -3 2 -1 -1 -2 -1 3 -3 -2 -2 2 7 -1 -3 -1 -2 -1 -4 # V 0 -3 -3 -3 -1 -2 -2 -3 -3 3 1 -2 1 -1 -2 -2 0 -3 -1 4 -3 2 -2 -1 -4 # B -2 -1 4 4 -3 0 1 -1 0 -3 -4 0 -3 -3 -2 0 -1 -4 -3 -3 4 -3 0 -1 -4 # J -1 -2 -3 -3 -1 -2 -3 -4 -3 3 3 -3 2 0 -3 -2 -1 -2 -1 2 -3 3 -3 -1 -4 # Z -1 0 0 1 -3 4 4 -2 0 -3 -3 1 -1 -3 -1 0 -1 -2 -2 -2 0 -3 4 -1 -4 # X -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -4 # * -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 -4 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=179 EG2=9.5e-09 E=1e-19 fullScore=293 s Q2LCP8 110 321 + 491 LILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVLMSLI-MGFLRLNDRGTIEDIYQLKNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLAFFLSVGVMIYYMNL s chrM 5258 870 + 16775 LICTVSLIMGTSITISSNH*ILA*TGLEINTLAIIPLISKSHHPRAIEATIKYFLTQSTASALILFSSITNA*STGQ*DITQL-----------NHPTSCLILTIAIAIKLGLVPFHF*FPEVLQGSSLITALLLSTLIKLPPITLLLLTSQSL----Nttllt---llaISSTLIGG*MG-LNQTQTRKILAFSSISHLG*IIIII--SYNPQLTI--LTFILYTIMTSTVFLSLAQIKVLKLSTLLIS*TKTPILNATVI---------LTLLSLAGLPPLTGFMPK*LIIQELTKQEITPiatiitilsllslfFYLRL p $%%%&((*+-,+,++**)((((((*-~~~2-*(&$$$####$$%(+37559=:73/.---,++**)('''&''*++'%$###"$%%%$$##$$$!!!!"""##$%%&'*14667A?9-,--13232,*(&%%%$$$###$$""""""!!!""""###"!!!!!!##""""###%%%%%%%$"%&&&&&&'(*,--,+('&&%%%%%$##"###$$#"""!""""""###$%%%%%$#"!""""""!!!!!!!!!!!!!!!!!"###"""#!()+,-28@BDD??;:410**(%#"!!!!!!!!!!!!!!"""""##$%%%%% a score=59 EG2=5.4e+08 E=0.0079 fullScore=129 s Q2LCP8 101 87 + 491 KKTKITDEGLILIYSSIIGMLISMEAHNLITLFLSLEISSICFYILALN-KNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSL s chrM 11752 255 + 16775 KRKRIFISTLIIIQPFII---LAFSATELILFYISFEATLIPTLILITR*GNQPERLSAGIYLLFYTLISSLPLLVSILYLHTNTGTL p $$$%&%%&&'''&&%$$#$$"%&'()*+./../010/*)((&%%%%$#"#"###$$%&&&$""!!"""$%%&'~~65410011121*' a score=55 EG2=1.9e+09 E=0.029 fullScore=89.1 s Q2LCP8 170 49 + 491 TTILLLGIVS-IYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLIL s chrM 13892 141 + 16775 TTCLCLGALSTLFAATCALTQNDIKKIIAFSTSS---QLGLIIVTIGLDL p &(())*)&%$"&)+,../0//02.+*))('''%#'&$*.3100115~~'& a score=52 EG2=5.1e+09 E=0.076 fullScore=196 s Q2LCP8 117 285 + 491 IIGMLISMEAHNLITLFLSLE-ISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTIGSLRQQKLIRFIAYSAIVNSALLILMLAGSMSE----ELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDIYQLKNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILIL s chrM 13445 813 + 16775 liailTLTIANNIFLLFVG*EGVGIMSFLLIG**QGRAEANTAALQAIIYNRIGDIGLILSIA*L---ASSLNT*EIQQITHPNQTPTLPLLGLILAATGKSAQFGL---HP*LPAAIEGPTPVSALLHSSTIVVAGIFLLIRTHP--FLSSNKTALTTCLCLGALSTLFAATC-ALTQNDIKKIIAFSTSSQLGLIIVTIGLDLPQLAFLHISTHAFFKAILFLCSGLIIHSL-------NGEQDIRKIGCLQKTLPITTSCLTIGNLALI---GTPFLAGFYSKDLII p #$$$$$$$%)+,,,,--+*(("""""""""""""""!!""""""#""""""""""""######"""""""######$#$$$$$$#""""""#$$$$$$$$$$$$$%$"""##$%%%%&''%###""""""""!""""#######"""""##$%%%%%&&&&&&&&''(('''&$"$'()(()))*+,+*&%$$$$$$$$###"""""""""!!!!!!!!!!!!!!!!!!!!!!!"""""""$$###########""""""!!!!!!!!!!!!"!!+,-,-./57~~,+)& a score=48 EG2=1.8e+10 E=0.28 fullScore=166 s Q2LCP8 292 179 + 491 LRQQKLIRFIAYSAIVNSALLILMLAGSMSEELMVNSVYYLINYIIGLTVLMSLIMGFLRLNDRGTIEDIYQL-KNMWVINMFGAIVYILVLMYLAGLPPMTNFISKILILLPYM--VLGRVYLTMLAFFLSVGVMIYYMNLVKIIIIDKVQTHEQGVAELEITSKPTKGGRRIVLGVMWLI s chrM 12313 498 + 16775 LRQTDLKSLIAYSSVSHMGLV---IAASIIQTQ*SFSGAIILIISHGLT--SSLLFCLANTNYERTHSRILILTRGLQPLLPLISV**LLANLTNMALPPTTNLIAELTIIVALFN*SSPTIILTGTATLLTASYTLYIL-----------LSTQRGTLPSHITTTPNSNTREHLLITLHII p )./.-.--/3793.+('&&%$""""####""!!!!!!!!!!!!!!"%%$"""####""####""""""""""""!!!!!!!!!!!!!!"""""""#&~~~;<=53/,)''&$#""$%!!"#$$%&%&&&&&&%%$$$$"!%%%&%$$$%&%!""$'*)))*,/0/./+))('%$##"""""! a score=48 EG2=1.8e+10 E=0.28 fullScore=85.1 s Q2LCP8 394 27 + 491 FISKILILLPYMVLGRVYLTMLAFFLS s chrM 11767 81 + 16775 FISTLIIIQPFIILAFSATELILFYIS p ~~~63333362-+)&$$$$$$%%%%%% a score=47 EG2=2.5e+10 E=0.38 fullScore=74.5 s Q2LCP8 375 42 + 491 AIVYILVLMYLAGLPPMTNFISKILILLPYMVLGRVYLTMLA s chrM 5606 108 + 16775 SLITALLLSTLIKLPPIT------LLLLTSQSLNttlltlla p #$%%&''()*+,/~~~+('))*)&$%&'''((****+,,+*) a score=43 EG2=9.2e+10 E=1.4 fullScore=85.4 s Q2LCP8 10 66 + 491 MIKYSIYILPLIILIVLSISIKKDVQRVHIIIQSLKLtlivimiviGIEESI--YVKLNGHLIKTELI s chrM 11677 204 + 16775 LLVLSCWFLPLIIIASQGHLQHEPHKRKRIFISTLIIIQPFIILAFSATELILFYISFEATLIPTLIL p ##$%(),.~~~~~'%#"""""""""#$$$%%%$#"""!!!!""""""""#""$#&''''''''&%#"" a score=43 EG2=9.2e+10 E=1.4 fullScore=92.9 s Q2LCP8 31 53 + 491 KKDVQRVHIIIQSLKLtlivimiviGIEESIYVKLNGHLIKTELIKLFEYLLL s chrM 13952 159 + 16775 QNDIKKIIAFSTSSQLGLIIVTIGLDLPQLAFLHISTHAFFKAILFLCSGLII p $&****(''''(*+-23~~/+)('('((((()('''''$#"!!!!!!!!!!!! a score=43 EG2=9.2e+10 E=1.4 fullScore=89.4 s Q2LCP8 314 36 + 491 LMLAGSMSEELMVNSVYYLI---NYIIGLTVLMSLIMGF s chrM 7709 114 + 16775 IVLANS-SLDIALHDTYYVVAHFHYVLSMGAVFAILAGF p $$%%$$"$$&''(**+--)&&(&&+----,,-./013~~ a score=43 EG2=9.2e+10 E=1.4 fullScore=93.2 s Q2LCP8 374 30 + 491 GAIVYILVLMYLAGLPPM---TNFISKILILLP s chrM 7064 99 + 16775 gasvdlaifhylagVSSILGAINFITTIINIKP p )**++,-./0~~~~*'%$$%$$*,,+*)(&%%% a score=42 EG2=1.3e+11 E=1.9 fullScore=83.6 s Q2LCP8 15 44 + 491 IYILPLIILIVLSISIKKDVQRVHIIIQSLKLtlivimiviGIE s chrM 8444 129 + 16775 LYLLTLILIEKLS-SNTVDAQEVELI*TILPAIVlvllalpslq p ',/25~~,*((('"""#$'''''&%$""""!!!!!!!!!!!!!! a score=42 EG2=1.3e+11 E=1.9 fullScore=57.4 s Q2LCP8 166 24 + 491 GGIATTILLLGIVSIYKSTGSLMY s chrM 54 72 + 16775 GGILCIIVHTFIYHIYYGTGNIYY p ~~~.+**)))*+,.2435871-*) a score=42 EG2=1.3e+11 E=1.9 fullScore=107 s Q2LCP8 403 78 + 491 PYMVLGRV----YLT-MLAFFLSVGVM----IYYMNLVKIIIIDKVQTHEQGVAELEITSKPTKGGRRIVLGVMWLIFSQLYLDEIL s chrM 15930 255 + 16775 PFIIIGQIASLSYFTILLILFPTIGTLENKILNY*NT--LIVYEKHWSCKPKTEDSTLLRVSEKEGSNLHLQLPKLVFSNKLLSETL p &&''''&$%%%$$$$""#$%&'())&$$$$""####"""#$$$$$"""""!!!!!!!"""""#$%(()**++++,17~~.,+,+*'& a score=40 EG2=2.4e+11 E=3.7 fullScore=89.2 s Q2LCP8 369 47 + 491 VINMFGAIVYILVLM-------YLAGLPPMTNFISKILILLPYMVLG--RVYLTML s chrM 15330 165 + 16775 ITNLFSAIPYIGHTLVE*A*GGFSVDNPTLTRFFA-LHFLLPFAIAGITIIHLTFL p $%,069~~2/)#""!"#%%&%$""##%*+-.-,(%#$$&),20-+)(""!"###"" a score=39 EG2=3.3e+11 E=5.1 fullScore=84.1 s Q2LCP8 159 78 + 491 GLKYYIIG---GIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGA s chrM 6692 222 + 16775 GTLYLIFGTWAGIAGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAF-------VIIFFIVIPIMIGGFGN*LVPLIIGA p %%&('('%,*&~~~.-+)('&&&&%&&')+++*(((&%###"""""""$#$##"""###$$%%%%&&''('''(('''&'& a score=38 EG2=4.6e+11 E=7.1 fullScore=100 s Q2LCP8 207 79 + 491 MGIALIVLGLILKLGIAPFHG--WLIDVYEGAGMLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLV s chrM 9281 216 + 16775 LGIPLILPslllpalllpsPGNRWI------NNRLSTIQL*FTH-LITKQLITPL--NKAGHK*ALLLTSLILILLSINLL p )~~52/,+++*)&$$$###""""+'""###$!!"""""""!!!!!!!!!!!!!!!##!!"""""#####"""""!!!!!!! a score=38 EG2=4.6e+11 E=7.1 fullScore=68.1 s Q2LCP8 238 52 + 491 MLMTFYLTITQKlvtlmvlinlyqnliiytnaimftngliILILVTLVVGTI s chrM 13082 150 + 16775 LLLNTlttlt--lltlltpiILPPLLNLKNSPISITKTIKTAFLISLIPTTI p """"""""""##)-~~*%##"""""""""""""""""""""""""""""""" a score=37 EG2=6.3e+11 E=9.8 fullScore=86.8 s Q2LCP8 23 31 + 491 LIVLSISIKKDVQRVHIIIQSLKLtlivimi s chrM 14102 93 + 16775 LIIHSLNGEQDIRKIGCLQKTLPITTSCLTI p ~~945420247520.+*)(((('&&#""""! a score=37 EG2=6.3e+11 E=9.8 fullScore=104 s Q2LCP8 132 43 + 491 LFLSLEISSICFYILALNKNSRKGIEGGLKYY--IIGGIATTILL s chrM 14561 135 + 16775 IILALELSSLSYSLTPPKHNPLINFSSSLGYFNPLTHRISPSILL p $&*.~~;63.)'&%%$$$$%$$$%%%&&&&&%##"""######## a score=37 EG2=6.3e+11 E=9.8 fullScore=131 s Q2LCP8 163 58 + 491 YIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKL s chrM 11797 162 + 16775 FIILAFSATELIL----FYISFEATLIPTLILITR*GNQPERLSAGIYLLFYTLISSL p #############""""!""""""""###$$$$$$$%%&'(.124~~0.+*)(((&%% a score=37 EG2=6.3e+11 E=9.8 fullScore=129 s Q2LCP8 190 102 + 491 TDLLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvt-lmvlinlyq----nliiytnaimftngliILILVTLVVGTIGS s chrM 12448 300 + 16775 TSSLLFCLANTNYERTHSRI------LILTRGLQPLLP-LISV**LLANLTNMALPPTTNLIAELTIIVALFN*SSPTIILTGTATLLTASYTLYILLSTQRGTLPS p ###$$%&)+~~+(((''&%%"""###""###$$$$#""$####""""""""###########""########"###"""""""$%&''(''&&&''''&&&&'&%$# a score=37 EG2=6.3e+11 E=9.8 fullScore=64.5 s Q2LCP8 266 19 + 491 ytnaimftngliILILVTL s chrM 10030 57 + 16775 yssttlltIGLLSILLVML p &'(()+,/1~~-*)))(&% a score=36 EG2=8.7e+11 E=14 fullScore=78.7 s Q2LCP8 17 12 + 491 ILPLIILIVLSI s chrM 8525 36 + 16775 ILPAIVlvllal p ~~~320/-,*(& a score=36 EG2=8.7e+11 E=14 fullScore=100 s Q2LCP8 129 94 + 491 LITLFLSLEISSICFYILALNKNSRKGIEGGLKYYIIGGIATTILLLGIVSIYKSTGSLMYTDLLVIVMENTDDYRIQMGIALIVLGLILKLGI s chrM 9650 270 + 16775 LIPALIIIETTSLLIRPLALGVRLTANLTAG--HLLIQlistatial--lpimpsisaltalilflltilevaVAIIQAYVFVLLLSLYLQENI p &'''(()+../0/.../~~~*'&%%%%%$$$"#"""#####"!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!""##############""" a score=36 EG2=8.7e+11 E=14 fullScore=63.1 s Q2LCP8 130 19 + 491 ITLFLSLEISSICFYILAL s chrM 13298 57 + 16775 IPISLKIDIYSIIFFPIAL p $$%&'()+,.~~640,++( a score=36 EG2=8.7e+11 E=14 fullScore=48 s Q2LCP8 224 10 + 491 PFHGWLIDVY s chrM 1313 30 + 16775 PFYWFLLDIY p ~~5..2472- a score=36 EG2=8.7e+11 E=14 fullScore=95.5 s Q2LCP8 330 15 + 491 YYLINYIIGLTVLMS s chrM 15561 45 + 16775 YYSFKDILGLTLILT p *++,,-26~~~+('% a score=44 EG2=6.7e+10 E=1 fullScore=66.4 s Q2LCP8 202 20 + 491 DYRIQMGIALIVLGLILKLG s chrM 9413 57 - 16775 DRRIrigvg-iglglllqlG p )+-..--*'#$'~~~:620+ a score=41 EG2=1.7e+11 E=2.7 fullScore=59.2 s Q2LCP8 0 34 + 491 MVCLFENLMNMIKYSIYILPLIILIVLSISIKKD s chrM 196 102 - 16775 LVSLGVSFVSLALFLVYLGGMLVVFVYSVSLAAD p %~41,,,,,,,,,-./0.,,--...00321.+)( a score=41 EG2=1.7e+11 E=2.7 fullScore=64.6 s Q2LCP8 337 38 + 491 IGLTVLMSLIMGFLRLNDRG----TIEDIYQLKNMWVINMFG s chrM 7551 126 - 16775 VGLVVVILFAGLFVRVNERSLGWISREKVNQVRSMMENHGFG p '~~+)'%$####*-444/+$%$%$"#'(**++**)%%$$$%$ a score=40 EG2=2.4e+11 E=3.7 fullScore=56.8 s Q2LCP8 406 20 + 491 VLGRVYLTMLAFFLSVGVMI s chrM 2209 60 - 16775 IIPrvvtmmaavfvmvgivi p $&'~~+))**,-0//0/+(& a score=40 EG2=2.4e+11 E=3.7 fullScore=60.6 s Q2LCP8 458 13 + 491 GGRRIVLGV-----MWLI s chrM 10652 54 - 16775 GGRRIGLGVIVL**LWLL p ~~~~~100*#&'((#&%$ a score=39 EG2=3.3e+11 E=5.1 fullScore=88.3 s Q2LCP8 193 55 + 491 LVIVMENTDDYRIQMGI---ALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTFYLTIT s chrM 115 171 - 16775 VLAVASNPSPYYGVVGLVVASVIGCGWLVSLGVSFVSLALFLVYLG-GMLVVFVYSVS p !!!""#######"""#"!""""##%'(*,0~~,'$$$$$%%&()'&$(**))(%%$$# a score=38 EG2=4.6e+11 E=7.1 fullScore=77.6 s Q2LCP8 109 30 + 491 GLILIYSSIIGMLISMEAHNLITLFLSLEI s chrM 463 90 - 16775 GVAVFYSCgvglflvag*glLLALFVVLEL p ,--/1~~0.//*'&%$$$$%'()*+*))(% a score=38 EG2=4.6e+11 E=7.1 fullScore=103 s Q2LCP8 217 41 + 491 ILKLGIAPFHGWLIDVYEGAGMLMTFYLTITQKlvtlmvli s chrM 3475 120 - 16775 ILKLGINCHSQWVAMLSAPEWMKIVVGIRLIRKAV-LMVLV p ~~~~~~*(''(*&$###""########$$$$%%$$"##### a score=37 EG2=6.3e+11 E=9.8 fullScore=52.8 s Q2LCP8 50 21 + 491 vimiviGIEESIYVKLNGHLI s chrM 7433 63 - 16775 LVMEVGGLEEGVMGGLEGFLV p #%''()/5~~41-,,---+*' a score=37 EG2=6.3e+11 E=9.8 fullScore=56 s Q2LCP8 112 32 + 491 LIYSSIIGMLISMEAHNLITLFLSLEISSICF s chrM 3203 96 - 16775 LCWLQLVLVIIQ*EGMT*FLLLLILQIGGICY p ""###$$$$%%%%&&%%%%&'()*-0347~~' a score=37 EG2=6.3e+11 E=9.8 fullScore=61.4 s Q2LCP8 140 27 + 491 SICFYILALNKNSRKGIEGGLKYYIIG s chrM 7421 78 - 16775 SIGFLVMEVG-GLEEGVMGGLEGFLVG p #$$%$$$$###"#%(.11~~~4/.-,) a score=37 EG2=6.3e+11 E=9.8 fullScore=70.2 s Q2LCP8 153 31 + 491 RKGIEGGLKYYIIGGI----ATTILLLGIVSIYKS s chrM 5831 105 - 16775 RIGLRMGVGLILVGQIRIRTVTVFLCLGLFGLVKS p %%''''''''()**'&$&&$"$%&(*~~40/.--) a score=37 EG2=6.3e+11 E=9.8 fullScore=60.2 s Q2LCP8 211 30 + 491 LIVLGLILKLGIAPFHGWLIDVYEGAGMLM s chrM 847 81 - 16775 VLLVGFRFRLG*---EGWLLEVRIGFGRVV p "##$''''(((#%)$&~~~852-,,))&%# a score=37 EG2=6.3e+11 E=9.8 fullScore=57.8 s Q2LCP8 367 18 + 491 MWVINMFGAIVYILVLMY s chrM 186 54 - 16775 MWVVSEFGCFFCFLGVIF p ~~~;6331)&$$##"""" a score=37 EG2=6.3e+11 E=9.8 fullScore=71.2 s Q2LCP8 373 27 + 491 FGAIVYILVLMYLAGLPPMTNFISKIL s chrM 14263 81 - 16775 FSLLFHLSLAVQLASIAPG*SFLSPIL p ##$$$%%%&'(+~~9633/.01.,'&$ a score=36 EG2=8.7e+11 E=14 fullScore=56.5 s Q2LCP8 156 22 + 491 IEGGLKY-YIIGGIATTILLLGI s chrM 6468 69 - 16775 LQGGLGV*LLLGAIGPPVLVLGL p #&(((%$##%'+,../1468~~' a score=36 EG2=8.7e+11 E=14 fullScore=64.2 s Q2LCP8 159 29 + 491 GLKYYIIGGIATTILLLGIVSIYKSTGSL s chrM 3894 87 - 16775 GLNYVCIEGFLRLVLV*G*VLVWG*CGGL p ~~9621312/.--..--0..--,*)))'% a score=36 EG2=8.7e+11 E=14 fullScore=76.1 s Q2LCP8 192 51 + 491 LLVIVMENTDDYRIQMGIALIVLGLILKLGIAPFHGWLIDVYEGAGMLMTF s chrM 3580 132 - 16775 LMVLVMDMGEFFRFRRGGRIIGVRRVSSVNV-------VRVLRSSGVSITF p ')-0~~2/./.01/-+*&%$$##""""""""##$$%$#$$%%&&'''&&&& a score=36 EG2=8.7e+11 E=14 fullScore=65.8 s Q2LCP8 276 17 + 491 liILILVTLVVGTIGSL s chrM 4206 48 - 16775 lviiilism-vggvggl p '((((('%##~~430*' a score=37 EG2=6.3e+11 E=0.55 fullScore=64.1 s Q2LCP8 7 55 + 491 LMNMIKYSIYILPLIILIVLSISIKKDVQRVHIIIQSLKLtliv-imiviGIEESI s chr32 42 168 + 1028 ILNLSQQLTLTHpltqsialslsltlsqtlaltiaptpaltvmvnlmiiltltqtl p #$$$$$$#$$%&~~-+*+***))'$#"""!""""""###$$###"#$$$$$$$##" # Query sequences=2 normal letters=17803 TEST lastal -S1 -pBISF -Q1 -e120 -f0 -j4 /tmp/last-test bs100.fastq # # a=21 b=9 A=21 B=9 e=120 d=64 x=119 y=44 z=119 D=1e+06 E=2.97648e+07 # R=10 u=0 s=2 S=1 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.37109 j=4 Q=1 # /tmp/last-test # Reference sequences=1 normal letters=16571 # lambda=0.22862 K=0.399124 # # A C G T M S K W R Y B D H V # A 6 -18 -18 -18 6 -18 -18 1 3 -18 -18 0 1 3 # C -18 6 -18 3 -18 -18 1 1 -18 3 1 0 1 -18 # G -18 -18 6 -18 -18 6 1 -18 3 -18 1 0 -18 3 # T -18 -18 -18 3 -18 -18 1 1 -18 3 1 0 1 -18 # M 3 3 -18 0 3 -18 -2 1 0 0 -2 0 1 0 # S -18 3 3 0 -18 3 1 -2 0 0 1 0 -2 0 # K -18 -18 3 0 -18 3 1 -2 0 0 1 0 -2 0 # W 3 -18 -18 0 3 -18 -2 1 0 0 -2 0 1 0 # R 3 -18 3 -18 3 3 -2 -2 3 -18 -2 0 -2 3 # Y -18 3 -18 3 -18 -18 1 1 -18 3 1 0 1 -18 # B -18 1 1 1 -18 1 1 -1 -2 1 1 0 -1 -2 # D 1 -18 1 -2 1 1 -1 -1 1 -2 -1 0 -1 1 # H 1 1 -18 1 1 -18 -1 1 -2 1 -1 0 1 -2 # V 1 1 1 -2 1 1 -1 -1 1 -2 -1 0 -1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 441 chrM 13913 87 + 16571 0 0 87 - 87 87 EG2=6.5e-27 E=1.8e-42 fullScore=444 429 chrM 1543 87 + 16571 1 0 87 + 87 87 EG2=1e-25 E=1e-40 fullScore=432 370 chrM 12300 84 + 16571 2 3 84 + 87 84 EG2=7.3e-20 E=6e-33 fullScore=377 258 chrM 12453 69 + 16571 3 18 69 - 87 69 EG2=9.7e-09 E=8.5e-21 fullScore=272 432 chrM 5737 87 + 16571 4 0 87 + 87 87 EG2=5.1e-26 E=3.7e-41 fullScore=435 283 chrM 6106 67 + 16571 5 20 67 - 87 67 EG2=3.2e-11 E=2.2e-23 fullScore=295 380 chrM 11106 87 + 16571 6 0 87 + 87 87 EG2=7.4e-21 E=3.6e-34 fullScore=384 346 chrM 143 85 + 16571 7 2 85 - 87 85 EG2=1.8e-17 E=3.8e-30 fullScore=355 377 chrM 5006 87 + 16571 8 0 87 + 87 87 EG2=1.5e-20 E=8.4e-34 fullScore=380 387 chrM 7901 87 + 16571 9 0 87 + 87 87 EG2=1.5e-21 E=4.7e-35 fullScore=391 211 chrM 3290 63 + 16571 10 0 63 + 87 63 EG2=0.00045 E=5.6e-16 fullScore=225 403 chrM 15997 87 + 16571 11 0 87 - 87 87 EG2=3.9e-23 E=3.9e-37 fullScore=406 369 chrM 3253 87 + 16571 12 0 87 + 87 87 EG2=9.2e-20 E=7.9e-33 fullScore=373 381 chrM 1368 87 + 16571 13 0 87 - 87 87 EG2=5.9e-21 E=2.7e-34 fullScore=383 379 chrM 6781 86 + 16571 14 1 86 - 87 86 EG2=9.4e-21 E=4.8e-34 fullScore=385 358 chrM 12881 86 + 16571 15 1 86 + 87 86 EG2=1.1e-18 E=1.6e-31 fullScore=363 384 chrM 360 87 + 16571 16 0 87 - 87 87 EG2=3e-21 E=1.1e-34 fullScore=389 321 chrM 10589 87 + 16571 18 0 87 + 87 87 EG2=5.4e-15 E=2.1e-27 fullScore=325 372 chrM 14174 87 + 16571 19 0 87 + 87 87 EG2=4.6e-20 E=3.4e-33 fullScore=373 341 chrM 5859 87 + 16571 20 0 87 + 87 87 EG2=5.5e-17 E=1.4e-29 fullScore=346 387 chrM 80 87 + 16571 21 0 87 + 87 87 EG2=1.5e-21 E=4.7e-35 fullScore=391 386 chrM 15082 82 + 16571 22 5 82 - 87 82 EG2=1.9e-21 E=6.3e-35 fullScore=394 386 chrM 3176 87 + 16571 23 0 87 - 87 87 EG2=1.9e-21 E=6.3e-35 fullScore=392 378 chrM 10081 87 + 16571 24 0 87 + 87 87 EG2=1.2e-20 E=6.3e-34 fullScore=383 337 chrM 1208 87 + 16571 25 0 87 + 87 87 EG2=1.4e-16 E=3.8e-29 fullScore=342 294 chrM 4660 75 + 16571 26 0 75 + 87 75 EG2=2.6e-12 E=1.5e-24 fullScore=306 378 chrM 14124 87 + 16571 27 0 87 + 87 87 EG2=1.2e-20 E=6.3e-34 fullScore=382 405 chrM 918 87 + 16571 28 0 87 + 87 87 EG2=2.5e-23 E=2.1e-37 fullScore=409 345 chrM 4775 81 + 16571 29 0 81 + 87 81 EG2=2.2e-17 E=4.9e-30 fullScore=353 357 chrM 6055 86 + 16571 30 0 86 + 87 86 EG2=1.4e-18 E=2.1e-31 fullScore=362 385 chrM 2794 86 + 16571 31 0 86 + 87 86 EG2=2.4e-21 E=8.5e-35 fullScore=392 369 chrM 8060 87 + 16571 32 0 87 + 87 87 EG2=9.2e-20 E=7.9e-33 fullScore=372 173 chrM 12857 72 + 16571 33 0 72 + 87 72 EG2=2.7 E=4.1e-12 fullScore=186 423 chrM 3260 87 + 16571 34 0 87 - 87 87 EG2=4e-25 E=7.1e-40 fullScore=427 363 chrM 4796 87 + 16571 35 0 87 + 87 87 EG2=3.6e-19 E=4.1e-32 fullScore=369 364 chrM 14459 87 + 16571 36 0 87 + 87 87 EG2=2.9e-19 E=3.1e-32 fullScore=370 375 chrM 10096 87 + 16571 37 0 87 + 87 87 EG2=2.3e-20 E=1.5e-33 fullScore=379 206 chrM 3664 49 + 16571 38 38 49 - 87 49 EG2=0.0014 E=1.8e-15 fullScore=220 378 chrM 7893 87 + 16571 39 0 87 + 87 87 EG2=1.2e-20 E=6.3e-34 fullScore=381 363 chrM 5186 87 + 16571 40 0 87 + 87 87 EG2=3.6e-19 E=4.1e-32 fullScore=366 304 chrM 10193 87 + 16571 41 0 87 + 87 87 EG2=2.6e-13 E=1.4e-25 fullScore=310 406 chrM 5520 87 + 16571 42 0 87 + 87 87 EG2=2e-23 E=1.6e-37 fullScore=409 224 chrM 14308 48 + 16571 43 39 48 - 87 48 EG2=2.3e-05 E=2.6e-17 fullScore=232 137 chrM 6497 39 + 16571 44 48 39 - 87 39 EG2=1e+04 E=1.8e-08 fullScore=150 385 chrM 9710 79 + 16571 45 8 79 - 87 79 EG2=2.4e-21 E=8.5e-35 fullScore=390 390 chrM 12475 87 + 16571 46 0 87 + 87 87 EG2=7.6e-22 E=2e-35 fullScore=393 365 chrM 6330 87 + 16571 47 0 87 + 87 87 EG2=2.3e-19 E=2.4e-32 fullScore=368 372 chrM 6202 86 + 16571 48 0 86 + 87 86 EG2=4.6e-20 E=3.4e-33 fullScore=379 369 chrM 12896 87 + 16571 49 0 87 + 87 87 EG2=9.2e-20 E=7.9e-33 fullScore=373 155 chrM 6025 36 + 16571 50 0 36 + 87 36 EG2=1.6e+02 E=2.7e-10 fullScore=171 378 chrM 9664 87 + 16571 51 0 87 + 87 87 EG2=1.2e-20 E=6.3e-34 fullScore=382 132 chrM 10545 43 + 16571 52 0 43 + 87 43 EG2=3.1e+04 E=5.8e-08 fullScore=143 386 chrM 14458 87 + 16571 53 0 87 + 87 87 EG2=1.9e-21 E=6.3e-35 fullScore=390 388 chrM 6397 86 + 16571 54 1 86 - 87 86 EG2=1.2e-21 E=3.5e-35 fullScore=394 399 chrM 36 87 + 16571 55 0 87 + 87 87 EG2=9.7e-23 E=1.3e-36 fullScore=402 417 chrM 9569 87 + 16571 56 0 87 - 87 87 EG2=1.6e-24 E=4.9e-39 fullScore=421 313 chrM 11219 85 + 16571 57 0 85 + 87 85 EG2=3.3e-14 E=1.5e-26 fullScore=319 409 chrM 12834 85 + 16571 58 2 85 - 87 85 EG2=9.8e-24 E=6.1e-38 fullScore=414 356 chrM 9915 84 + 16571 59 3 84 - 87 84 EG2=1.8e-18 E=2.7e-31 fullScore=365 386 chrM 12614 87 + 16571 60 0 87 - 87 87 EG2=1.9e-21 E=6.3e-35 fullScore=391 207 chrM 16062 72 + 16571 63 0 72 + 87 72 EG2=0.0011 E=1.4e-15 fullScore=219 348 chrM 13007 87 + 16571 64 0 87 + 87 87 EG2=1.1e-17 E=2.2e-30 fullScore=352 362 chrM 12002 86 + 16571 65 0 86 + 87 86 EG2=4.6e-19 E=5.4e-32 fullScore=369 378 chrM 14921 87 + 16571 66 0 87 + 87 87 EG2=1.2e-20 E=6.3e-34 fullScore=382 401 chrM 9520 87 + 16571 67 0 87 - 87 87 EG2=6.1e-23 E=7.2e-37 fullScore=406 401 chrM 15820 87 + 16571 68 0 87 - 87 87 EG2=6.1e-23 E=7.2e-37 fullScore=403 358 chrM 5660 87 + 16571 69 0 87 + 87 87 EG2=1.1e-18 E=1.6e-31 fullScore=364 343 chrM 7675 84 + 16571 70 0 84 + 87 84 EG2=3.5e-17 E=8.2e-30 fullScore=351 354 chrM 15444 87 + 16571 71 0 87 + 87 87 EG2=2.8e-18 E=4.6e-31 fullScore=360 270 chrM 11021 84 + 16571 72 0 84 + 87 84 EG2=6.2e-10 E=4.9e-22 fullScore=279 324 chrM 14598 86 + 16571 73 1 86 - 87 86 EG2=2.7e-15 E=1e-27 fullScore=330 233 chrM 4239 66 + 16571 74 21 66 - 87 66 EG2=2.9e-06 E=3.1e-18 fullScore=245 400 chrM 6363 85 + 16571 75 2 85 - 87 85 EG2=7.7e-23 E=9.8e-37 fullScore=405 358 chrM 4155 87 + 16571 76 0 87 + 87 87 EG2=1.1e-18 E=1.6e-31 fullScore=364 381 chrM 10777 87 + 16571 77 0 87 - 87 87 EG2=5.9e-21 E=2.7e-34 fullScore=385 332 chrM 11894 85 + 16571 78 0 85 + 87 85 EG2=4.3e-16 E=1.4e-28 fullScore=340 369 chrM 10826 87 + 16571 79 0 87 + 87 87 EG2=9.2e-20 E=7.9e-33 fullScore=373 362 chrM 8356 87 + 16571 81 0 87 + 87 87 EG2=4.6e-19 E=5.4e-32 fullScore=367 431 chrM 9713 87 + 16571 82 0 87 - 87 87 EG2=6.4e-26 E=5.1e-41 fullScore=435 338 chrM 1726 87 + 16571 83 0 87 - 87 87 EG2=1.1e-16 E=2.9e-29 fullScore=341 318 chrM 11566 86 + 16571 85 0 86 + 87 86 EG2=1.1e-14 E=4.4e-27 fullScore=323 363 chrM 9190 85 + 16571 86 2 85 - 87 85 EG2=3.6e-19 E=4.1e-32 fullScore=371 375 chrM 15011 87 + 16571 87 0 87 + 87 87 EG2=2.3e-20 E=1.5e-33 fullScore=379 363 chrM 715 87 + 16571 88 0 87 + 87 87 EG2=3.6e-19 E=4.1e-32 fullScore=367 358 chrM 8407 87 + 16571 89 0 87 + 87 87 EG2=1.1e-18 E=1.6e-31 fullScore=362 278 chrM 1598 66 + 16571 90 21 66 - 87 66 EG2=1e-10 E=7.2e-23 fullScore=289 415 chrM 3741 87 + 16571 91 0 87 - 87 87 EG2=2.5e-24 E=9.3e-39 fullScore=418 372 chrM 5909 83 + 16571 92 0 83 + 87 83 EG2=4.6e-20 E=3.4e-33 fullScore=380 220 chrM 3782 49 + 16571 93 38 49 - 87 49 EG2=5.7e-05 E=6.7e-17 fullScore=233 329 chrM 12018 87 + 16571 94 0 87 + 87 87 EG2=8.6e-16 E=2.9e-28 fullScore=336 289 chrM 131 74 + 16571 95 0 74 + 87 74 EG2=8.1e-12 E=5.2e-24 fullScore=302 381 chrM 3991 87 + 16571 96 0 87 + 87 87 EG2=5.9e-21 E=2.7e-34 fullScore=384 259 chrM 569 65 + 16571 97 0 65 + 87 65 EG2=7.7e-09 E=6.7e-21 fullScore=272 223 chrM 6938 71 + 16571 98 16 71 - 87 71 EG2=2.9e-05 E=3.3e-17 fullScore=235 290 chrM 8939 87 + 16571 99 0 87 - 87 87 EG2=6.4e-12 E=4.1e-24 fullScore=302 # Query sequences=100 normal letters=8700 TEST lastal -D1000 -fTAB -K2 /tmp/last-test galGal3-M-32.fa # # a=7 b=1 A=7 B=1 e=15 d=13 x=14 y=9 z=14 D=1000 E=2.43016e+10 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 K=2 k=1 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=16571 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 847 chrM 5902 1595 + 16571 chrM 6645 1589 + 16775 450,3:0,1085,3:0,54 EG2=0 E=0 524 chrM 14756 1124 + 16571 chrM 14904 1124 + 16775 1124 EG2=1.3e-232 E=6.2e-242 426 chrM 10944 1266 + 16571 chrM 11669 1266 + 16775 1266 EG2=5.6e-186 E=2.8e-195 404 chrM 9109 918 + 16571 chrM 9824 918 + 16775 918 EG2=1.7e-175 E=8.4e-185 366 chrM 3334 920 + 16571 chrM 4097 920 + 16775 920 EG2=2e-157 E=1e-166 259 chrM 7524 722 + 16571 chrM 8266 721 + 16775 45,0:1,17,0:1,154,3:0,503 EG2=1.8e-106 E=9.1e-116 249 chrM 13168 681 + 16571 chrM 13901 681 + 16775 681 EG2=1e-101 E=5.3e-111 242 chrM 12461 671 + 16571 chrM 13197 668 + 16775 505,3:0,163 EG2=2.2e-98 E=1.1e-107 193 chrM 4321 800 + 16571 chrM 5093 798 + 16775 66,3:0,69,0:1,662 EG2=4.6e-75 E=2.4e-84 160 chrM 2908 255 + 16571 chrM 3629 255 + 16775 146,0:1,53,1:0,55 EG2=2.3e-59 E=1.2e-68 149 chrM 1042 401 + 16571 chrM 1702 407 + 16775 114,0:2,92,0:4,33,0:1,27,0:1,45,1:0,32,1:0,56 EG2=4e-54 E=2.1e-63 122 chrM 2409 334 + 16571 chrM 3112 338 + 16775 41,2:0,38,0:1,32,0:2,37,0:3,184 EG2=2.8e-41 E=1.5e-50 114 chrM 5208 523 + 16571 chrM 5978 529 + 16775 233,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80 EG2=1.8e-37 E=9.9e-47 108 chrM 595 352 + 16571 chrM 1243 356 + 16775 56,1:0,82,0:3,63,0:1,19,0:1,55,1:0,57,0:1,18 EG2=1.3e-34 E=7.1e-44 95 chrM 1742 281 + 16571 chrM 2432 295 + 16775 26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83 EG2=2e-28 E=1.1e-37 92 chrM 10106 346 + 16571 chrM 10825 349 + 16775 299,0:3,47 EG2=5.4e-27 E=2.9e-36 90 chrM 10518 272 + 16571 chrM 11243 272 + 16775 272 EG2=4.9e-26 E=2.6e-35 72 chrM 8638 216 + 16571 chrM 9353 216 + 16775 216 EG2=1.8e-17 E=9.8e-27 67 chrM 8897 151 + 16571 chrM 9612 151 + 16775 151 EG2=4.3e-15 E=2.4e-24 60 chrM 12211 128 + 16571 chrM 12944 128 + 16775 128 EG2=9.2e-12 E=5.1e-21 48 chrM 14425 318 + 16571 chrM 16456 319 + 16775 247,0:2,54,1:0,16 EG2=4.8e-06 E=2.6e-15 40 chrM 1546 60 + 16571 chrM 2216 60 + 16775 60 EG2=0.031 E=1.7e-11 36 chrM 5764 129 + 16571 chrM 6510 134 + 16775 78,0:2,33,0:3,18 EG2=2.5 E=1.4e-09 33 chrM 1450 53 + 16571 chrM 2122 53 + 16775 53 EG2=66 E=3.6e-08 26 chrM 12989 94 + 16571 chrM 5538 94 + 16775 94 EG2=1.4e+05 E=7.8e-05 26 chrM 198 48 + 16571 chrM 856 48 + 16775 48 EG2=1.4e+05 E=7.8e-05 25 chrM 3237 70 + 16571 chrM 3973 69 + 16775 38,1:0,31 EG2=4.2e+05 E=0.00023 24 chrM 2807 38 + 16571 chrM 3520 38 + 16775 38 EG2=1.3e+06 E=0.0007 24 chrM 3279 28 + 16571 chrM 10177 28 - 16775 28 EG2=1.3e+06 E=0.0007 23 chrM 15975 49 + 16571 chrM 16128 49 + 16775 49 EG2=3.8e+06 E=0.0021 22 chrM 12976 102 + 16571 chrM 12073 105 + 16775 69,0:3,33 EG2=1.1e+07 E=0.0063 22 chrM 14065 78 + 16571 chrM 14801 78 + 16775 78 EG2=1.1e+07 E=0.0063 20 chrM 15293 44 + 16571 chrM 7673 44 + 16775 44 EG2=1e+08 E=0.056 20 chrM 3316 68 + 16571 chrM 7217 68 + 16775 68 EG2=1e+08 E=0.056 19 chrM 14091 55 + 16571 chrM 11832 55 + 16775 55 EG2=3e+08 E=0.17 19 chrM 14757 47 + 16571 chrM 14646 47 + 16775 47 EG2=3e+08 E=0.17 19 chrM 15279 67 + 16571 chrM 11771 67 + 16775 67 EG2=3e+08 E=0.17 19 chrM 9322 33 + 16571 chrM 9810 33 + 16775 33 EG2=3e+08 E=0.17 18 chrM 10840 40 + 16571 chrM 14173 40 + 16775 40 EG2=9.1e+08 E=0.5 18 chrM 10947 40 + 16571 chrM 13143 40 + 16775 40 EG2=9.1e+08 E=0.5 18 chrM 11594 60 + 16571 chrM 13952 60 + 16775 60 EG2=9.1e+08 E=0.5 18 chrM 11718 30 + 16571 chrM 10920 30 + 16775 30 EG2=9.1e+08 E=0.5 18 chrM 12087 38 + 16571 chrM 9483 38 + 16775 38 EG2=9.1e+08 E=0.5 18 chrM 15450 50 + 16571 chrM 9450 50 + 16775 50 EG2=9.1e+08 E=0.5 18 chrM 545 30 + 16571 chrM 6185 30 + 16775 30 EG2=9.1e+08 E=0.5 17 chrM 12543 31 + 16571 chrM 8689 31 + 16775 31 EG2=2.7e+09 E=1.5 17 chrM 13233 71 + 16571 chrM 5767 71 + 16775 71 EG2=2.7e+09 E=1.5 17 chrM 15620 29 + 16571 chrM 11956 29 + 16775 29 EG2=2.7e+09 E=1.5 17 chrM 15629 37 + 16571 chrM 13202 37 + 16775 37 EG2=2.7e+09 E=1.5 17 chrM 2171 23 + 16571 chrM 2890 23 + 16775 23 EG2=2.7e+09 E=1.5 17 chrM 2287 35 + 16571 chrM 2996 35 + 16775 35 EG2=2.7e+09 E=1.5 17 chrM 4152 43 + 16571 chrM 2363 43 + 16775 43 EG2=2.7e+09 E=1.5 17 chrM 4301 27 + 16571 chrM 12901 27 + 16775 27 EG2=2.7e+09 E=1.5 17 chrM 464 43 + 16571 chrM 5614 43 + 16775 43 EG2=2.7e+09 E=1.5 17 chrM 5354 37 + 16571 chrM 5635 37 + 16775 37 EG2=2.7e+09 E=1.5 17 chrM 5842 33 + 16571 chrM 3861 33 - 16775 33 EG2=2.7e+09 E=1.5 17 chrM 7784 43 + 16571 chrM 11497 43 + 16775 43 EG2=2.7e+09 E=1.5 17 chrM 8549 35 + 16571 chrM 473 35 + 16775 35 EG2=2.7e+09 E=1.5 17 chrM 9346 21 + 16571 chrM 4764 21 + 16775 21 EG2=2.7e+09 E=1.5 16 chrM 10412 44 + 16571 chrM 10713 44 + 16775 44 EG2=8.1e+09 E=4.5 16 chrM 11201 48 + 16571 chrM 12709 48 + 16775 48 EG2=8.1e+09 E=4.5 16 chrM 11715 28 + 16571 chrM 12489 28 + 16775 28 EG2=8.1e+09 E=4.5 16 chrM 13128 26 + 16571 chrM 1473 26 - 16775 26 EG2=8.1e+09 E=4.5 16 chrM 13647 60 + 16571 chrM 9068 60 + 16775 60 EG2=8.1e+09 E=4.5 16 chrM 14115 28 + 16571 chrM 9646 28 + 16775 28 EG2=8.1e+09 E=4.5 16 chrM 14155 42 + 16571 chrM 16201 42 + 16775 42 EG2=8.1e+09 E=4.5 16 chrM 14327 24 + 16571 chrM 16607 24 + 16775 24 EG2=8.1e+09 E=4.5 16 chrM 14980 22 + 16571 chrM 11973 22 + 16775 22 EG2=8.1e+09 E=4.5 16 chrM 15450 32 + 16571 chrM 13086 32 + 16775 32 EG2=8.1e+09 E=4.5 16 chrM 15624 58 + 16571 chrM 12812 58 + 16775 58 EG2=8.1e+09 E=4.5 16 chrM 1668 36 + 16571 chrM 1653 36 + 16775 36 EG2=8.1e+09 E=4.5 16 chrM 3683 22 + 16571 chrM 8403 22 + 16775 22 EG2=8.1e+09 E=4.5 16 chrM 4760 42 + 16571 chrM 9538 42 + 16775 42 EG2=8.1e+09 E=4.5 16 chrM 5296 26 + 16571 chrM 15247 26 + 16775 26 EG2=8.1e+09 E=4.5 16 chrM 5427 26 + 16571 chrM 16421 26 + 16775 26 EG2=8.1e+09 E=4.5 16 chrM 5443 20 + 16571 chrM 15250 20 + 16775 20 EG2=8.1e+09 E=4.5 16 chrM 6457 46 + 16571 chrM 8517 46 + 16775 46 EG2=8.1e+09 E=4.5 16 chrM 7692 44 + 16571 chrM 4788 44 + 16775 44 EG2=8.1e+09 E=4.5 16 chrM 8312 24 + 16571 chrM 9034 24 + 16775 24 EG2=8.1e+09 E=4.5 16 chrM 8362 42 + 16571 chrM 9080 42 + 16775 42 EG2=8.1e+09 E=4.5 16 chrM 8434 44 + 16571 chrM 16482 44 + 16775 44 EG2=8.1e+09 E=4.5 16 chrM 8462 46 + 16571 chrM 2154 46 + 16775 46 EG2=8.1e+09 E=4.5 16 chrM 8572 34 + 16571 chrM 6725 34 + 16775 34 EG2=8.1e+09 E=4.5 16 chrM 9094 38 + 16571 chrM 13088 38 + 16775 38 EG2=8.1e+09 E=4.5 16 chrM 9119 42 + 16571 chrM 5697 42 + 16775 42 EG2=8.1e+09 E=4.5 15 chrM 10086 29 + 16571 chrM 14405 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 10604 17 + 16571 chrM 12789 17 + 16775 17 EG2=2.4e+10 E=13 15 chrM 11138 25 + 16571 chrM 5342 25 + 16775 25 EG2=2.4e+10 E=13 15 chrM 11344 71 + 16571 chrM 5521 71 + 16775 71 EG2=2.4e+10 E=13 15 chrM 11486 41 + 16571 chrM 5639 41 + 16775 41 EG2=2.4e+10 E=13 15 chrM 11497 43 + 16571 chrM 16399 43 + 16775 43 EG2=2.4e+10 E=13 15 chrM 11804 35 + 16571 chrM 11166 35 + 16775 35 EG2=2.4e+10 E=13 15 chrM 12025 19 + 16571 chrM 7144 19 + 16775 19 EG2=2.4e+10 E=13 15 chrM 12322 69 + 16571 chrM 14423 69 + 16775 69 EG2=2.4e+10 E=13 15 chrM 12408 29 + 16571 chrM 2374 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 12485 29 + 16571 chrM 5874 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 12741 45 + 16571 chrM 9823 45 + 16775 45 EG2=2.4e+10 E=13 15 chrM 12964 33 + 16571 chrM 5645 33 + 16775 33 EG2=2.4e+10 E=13 15 chrM 13064 23 + 16571 chrM 10214 23 + 16775 23 EG2=2.4e+10 E=13 15 chrM 13105 25 + 16571 chrM 15792 25 + 16775 25 EG2=2.4e+10 E=13 15 chrM 13839 27 + 16571 chrM 9513 27 + 16775 27 EG2=2.4e+10 E=13 15 chrM 14047 19 + 16571 chrM 11770 19 + 16775 19 EG2=2.4e+10 E=13 15 chrM 14112 29 + 16571 chrM 15587 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 14117 19 + 16571 chrM 9819 19 + 16775 19 EG2=2.4e+10 E=13 15 chrM 14211 21 + 16571 chrM 5231 21 + 16775 21 EG2=2.4e+10 E=13 15 chrM 14860 37 + 16571 chrM 13198 37 + 16775 37 EG2=2.4e+10 E=13 15 chrM 15298 39 + 16571 chrM 4273 39 + 16775 39 EG2=2.4e+10 E=13 15 chrM 15627 21 + 16571 chrM 11301 21 + 16775 21 EG2=2.4e+10 E=13 15 chrM 15627 25 + 16571 chrM 5970 25 + 16775 25 EG2=2.4e+10 E=13 15 chrM 16148 31 + 16571 chrM 4131 31 + 16775 31 EG2=2.4e+10 E=13 15 chrM 16260 37 + 16571 chrM 15631 37 + 16775 37 EG2=2.4e+10 E=13 15 chrM 1818 25 + 16571 chrM 12429 25 + 16775 25 EG2=2.4e+10 E=13 15 chrM 2481 31 + 16571 chrM 2388 31 + 16775 31 EG2=2.4e+10 E=13 15 chrM 3359 29 + 16571 chrM 14685 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 3785 35 + 16571 chrM 15982 35 + 16775 35 EG2=2.4e+10 E=13 15 chrM 4176 23 + 16571 chrM 15836 23 + 16775 23 EG2=2.4e+10 E=13 15 chrM 4230 17 + 16571 chrM 5293 17 + 16775 17 EG2=2.4e+10 E=13 15 chrM 473 27 + 16571 chrM 5926 27 + 16775 27 EG2=2.4e+10 E=13 15 chrM 4761 23 + 16571 chrM 9904 23 - 16775 23 EG2=2.4e+10 E=13 15 chrM 4870 37 + 16571 chrM 11633 37 + 16775 37 EG2=2.4e+10 E=13 15 chrM 4920 21 + 16571 chrM 15243 21 + 16775 21 EG2=2.4e+10 E=13 15 chrM 4922 33 + 16571 chrM 8985 33 + 16775 33 EG2=2.4e+10 E=13 15 chrM 5187 53 + 16571 chrM 13097 53 + 16775 53 EG2=2.4e+10 E=13 15 chrM 5296 43 + 16571 chrM 13674 43 + 16775 43 EG2=2.4e+10 E=13 15 chrM 5306 25 + 16571 chrM 5344 25 + 16775 25 EG2=2.4e+10 E=13 15 chrM 5326 29 + 16571 chrM 14622 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 5369 25 + 16571 chrM 14296 25 + 16775 25 EG2=2.4e+10 E=13 15 chrM 5836 17 + 16571 chrM 13783 17 + 16775 17 EG2=2.4e+10 E=13 15 chrM 6415 29 + 16571 chrM 16654 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 6447 43 + 16571 chrM 9290 43 + 16775 43 EG2=2.4e+10 E=13 15 chrM 6467 47 + 16571 chrM 4360 47 + 16775 47 EG2=2.4e+10 E=13 15 chrM 6518 37 + 16571 chrM 3056 37 + 16775 37 EG2=2.4e+10 E=13 15 chrM 7303 29 + 16571 chrM 10169 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 7383 29 + 16571 chrM 4317 29 + 16775 29 EG2=2.4e+10 E=13 15 chrM 8362 21 + 16571 chrM 10302 21 + 16775 21 EG2=2.4e+10 E=13 15 chrM 8406 41 + 16571 chrM 5604 41 + 16775 41 EG2=2.4e+10 E=13 15 chrM 8413 103 + 16571 chrM 6097 103 + 16775 103 EG2=2.4e+10 E=13 15 chrM 8418 53 + 16571 chrM 15469 53 + 16775 53 EG2=2.4e+10 E=13 15 chrM 8436 21 + 16571 chrM 14920 21 + 16775 21 EG2=2.4e+10 E=13 15 chrM 8564 33 + 16571 chrM 9971 33 + 16775 33 EG2=2.4e+10 E=13 15 chrM 8569 27 + 16571 chrM 15768 27 + 16775 27 EG2=2.4e+10 E=13 15 chrM 8720 15 + 16571 chrM 8597 15 + 16775 15 EG2=2.4e+10 E=13 15 chrM 8953 35 + 16571 chrM 14396 35 + 16775 35 EG2=2.4e+10 E=13 15 chrM 9337 33 + 16571 chrM 11283 33 + 16775 33 EG2=2.4e+10 E=13 15 chrM 9848 43 + 16571 chrM 4315 43 + 16775 43 EG2=2.4e+10 E=13 18 chrM 15816 34 + 16571 chr32 172 34 + 1028 34 EG2=9.1e+08 E=0.03 16 chrM 10338 22 + 16571 chr32 177 22 + 1028 22 EG2=8.1e+09 E=0.27 15 chrM 13147 33 + 16571 chr32 78 33 + 1028 33 EG2=2.4e+10 E=0.8 15 chrM 1676 23 + 16571 chr32 71 23 + 1028 23 EG2=2.4e+10 E=0.8 15 chrM 6590 19 + 16571 chr32 2 19 + 1028 19 EG2=2.4e+10 E=0.8 # Query sequences=2 normal letters=17803 TEST lastal -D1000 -fTAB -K0 /tmp/last-test galGal3-M-32.fa # # a=7 b=1 A=7 B=1 e=15 d=13 x=14 y=9 z=14 D=1000 E=2.43016e+10 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 K=0 k=1 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=16571 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 847 chrM 5902 1595 + 16571 chrM 6645 1589 + 16775 450,3:0,1085,3:0,54 EG2=0 E=0 524 chrM 14756 1124 + 16571 chrM 14904 1124 + 16775 1124 EG2=1.3e-232 E=6.2e-242 426 chrM 10944 1266 + 16571 chrM 11669 1266 + 16775 1266 EG2=5.6e-186 E=2.8e-195 404 chrM 9109 918 + 16571 chrM 9824 918 + 16775 918 EG2=1.7e-175 E=8.4e-185 366 chrM 3334 920 + 16571 chrM 4097 920 + 16775 920 EG2=2e-157 E=1e-166 259 chrM 7524 722 + 16571 chrM 8266 721 + 16775 45,0:1,17,0:1,154,3:0,503 EG2=1.8e-106 E=9.1e-116 249 chrM 13168 681 + 16571 chrM 13901 681 + 16775 681 EG2=1e-101 E=5.3e-111 242 chrM 12461 671 + 16571 chrM 13197 668 + 16775 505,3:0,163 EG2=2.2e-98 E=1.1e-107 193 chrM 4321 800 + 16571 chrM 5093 798 + 16775 66,3:0,69,0:1,662 EG2=4.6e-75 E=2.4e-84 160 chrM 2908 255 + 16571 chrM 3629 255 + 16775 146,0:1,53,1:0,55 EG2=2.3e-59 E=1.2e-68 149 chrM 1042 401 + 16571 chrM 1702 407 + 16775 114,0:2,92,0:4,33,0:1,27,0:1,45,1:0,32,1:0,56 EG2=4e-54 E=2.1e-63 122 chrM 2409 334 + 16571 chrM 3112 338 + 16775 41,2:0,38,0:1,32,0:2,37,0:3,184 EG2=2.8e-41 E=1.5e-50 114 chrM 5208 523 + 16571 chrM 5978 529 + 16775 233,3:0,84,0:5,39,0:3,14,1:0,69,0:2,80 EG2=1.8e-37 E=9.9e-47 108 chrM 595 352 + 16571 chrM 1243 356 + 16775 56,1:0,82,0:3,63,0:1,19,0:1,55,1:0,57,0:1,18 EG2=1.3e-34 E=7.1e-44 95 chrM 1742 281 + 16571 chrM 2432 295 + 16775 26,0:1,12,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83 EG2=2e-28 E=1.1e-37 92 chrM 10106 346 + 16571 chrM 10825 349 + 16775 299,0:3,47 EG2=5.4e-27 E=2.9e-36 90 chrM 10518 272 + 16571 chrM 11243 272 + 16775 272 EG2=4.9e-26 E=2.6e-35 72 chrM 8638 216 + 16571 chrM 9353 216 + 16775 216 EG2=1.8e-17 E=9.8e-27 67 chrM 8897 151 + 16571 chrM 9612 151 + 16775 151 EG2=4.3e-15 E=2.4e-24 60 chrM 12211 128 + 16571 chrM 12944 128 + 16775 128 EG2=9.2e-12 E=5.1e-21 48 chrM 14425 318 + 16571 chrM 16456 319 + 16775 247,0:2,54,1:0,16 EG2=4.8e-06 E=2.6e-15 40 chrM 1546 60 + 16571 chrM 2216 60 + 16775 60 EG2=0.031 E=1.7e-11 36 chrM 5764 129 + 16571 chrM 6510 134 + 16775 78,0:2,33,0:3,18 EG2=2.5 E=1.4e-09 33 chrM 1450 53 + 16571 chrM 2122 53 + 16775 53 EG2=66 E=3.6e-08 26 chrM 198 48 + 16571 chrM 856 48 + 16775 48 EG2=1.4e+05 E=7.8e-05 25 chrM 3237 70 + 16571 chrM 3973 69 + 16775 38,1:0,31 EG2=4.2e+05 E=0.00023 24 chrM 2807 38 + 16571 chrM 3520 38 + 16775 38 EG2=1.3e+06 E=0.0007 24 chrM 3279 28 + 16571 chrM 10177 28 - 16775 28 EG2=1.3e+06 E=0.0007 23 chrM 15975 49 + 16571 chrM 16128 49 + 16775 49 EG2=3.8e+06 E=0.0021 22 chrM 14065 78 + 16571 chrM 14801 78 + 16775 78 EG2=1.1e+07 E=0.0063 19 chrM 14757 47 + 16571 chrM 14646 47 + 16775 47 EG2=3e+08 E=0.17 18 chrM 10947 40 + 16571 chrM 13143 40 + 16775 40 EG2=9.1e+08 E=0.5 17 chrM 2171 23 + 16571 chrM 2890 23 + 16775 23 EG2=2.7e+09 E=1.5 17 chrM 2287 35 + 16571 chrM 2996 35 + 16775 35 EG2=2.7e+09 E=1.5 17 chrM 4152 43 + 16571 chrM 2363 43 + 16775 43 EG2=2.7e+09 E=1.5 17 chrM 5842 33 + 16571 chrM 3861 33 - 16775 33 EG2=2.7e+09 E=1.5 17 chrM 8549 35 + 16571 chrM 473 35 + 16775 35 EG2=2.7e+09 E=1.5 16 chrM 13128 26 + 16571 chrM 1473 26 - 16775 26 EG2=8.1e+09 E=4.5 16 chrM 13647 60 + 16571 chrM 9068 60 + 16775 60 EG2=8.1e+09 E=4.5 16 chrM 14155 42 + 16571 chrM 16201 42 + 16775 42 EG2=8.1e+09 E=4.5 16 chrM 15450 32 + 16571 chrM 13086 32 + 16775 32 EG2=8.1e+09 E=4.5 16 chrM 1668 36 + 16571 chrM 1653 36 + 16775 36 EG2=8.1e+09 E=4.5 16 chrM 5427 26 + 16571 chrM 16421 26 + 16775 26 EG2=8.1e+09 E=4.5 16 chrM 8312 24 + 16571 chrM 9034 24 + 16775 24 EG2=8.1e+09 E=4.5 16 chrM 8362 42 + 16571 chrM 9080 42 + 16775 42 EG2=8.1e+09 E=4.5 16 chrM 9094 38 + 16571 chrM 13088 38 + 16775 38 EG2=8.1e+09 E=4.5 15 chrM 473 27 + 16571 chrM 5926 27 + 16775 27 EG2=2.4e+10 E=13 15 chrM 4761 23 + 16571 chrM 9904 23 - 16775 23 EG2=2.4e+10 E=13 15 chrM 6447 43 + 16571 chrM 9290 43 + 16775 43 EG2=2.4e+10 E=13 15 chrM 6518 37 + 16571 chrM 3056 37 + 16775 37 EG2=2.4e+10 E=13 18 chrM 15816 34 + 16571 chr32 172 34 + 1028 34 EG2=9.1e+08 E=0.03 15 chrM 13147 33 + 16571 chr32 78 33 + 1028 33 EG2=2.4e+10 E=0.8 15 chrM 1676 23 + 16571 chr32 71 23 + 1028 23 EG2=2.4e+10 E=0.8 15 chrM 6590 19 + 16571 chr32 2 19 + 1028 19 EG2=2.4e+10 E=0.8 # Query sequences=2 normal letters=17803 TEST lastal -W19 -fTAB /tmp/last-test hg19-M.fa # # a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.13155e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=19 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 1107 chrM 6510 2477 + 16775 chrM 5764 2482 + 16571 78,2:0,35,3:0,17,0:8,450,0:3,1085,0:3,67,5:0,57,1:0,19,1:0,152,0:3,505 EG2=0 E=0 540 chrM 11243 1829 + 16775 chrM 10518 1821 + 16571 1692,8:0,129 EG2=3.1e-240 E=1.6e-249 538 chrM 4097 1794 + 16775 chrM 3334 1787 + 16571 914,0:2,27,2:0,44,9:0,66,0:3,61,1:0,670 EG2=2.8e-239 E=1.4e-248 524 chrM 14904 1124 + 16775 chrM 14756 1124 + 16571 1124 EG2=1.3e-232 E=6.6e-242 509 chrM 9353 1389 + 16775 chrM 8638 1389 + 16571 1389 EG2=1.8e-225 E=9.1e-235 473 chrM 13197 1385 + 16775 chrM 12461 1388 + 16571 510,0:3,875 EG2=2.4e-208 E=1.3e-217 186 chrM 1702 574 + 16775 chrM 1042 564 + 16571 114,2:0,92,4:0,33,1:0,27,1:0,45,0:1,32,0:1,61,6:0,55,0:2,101 EG2=9.8e-72 E=5.5e-81 160 chrM 3629 255 + 16775 chrM 2908 255 + 16571 146,1:0,53,0:1,55 EG2=2.3e-59 E=1.3e-68 122 chrM 3112 338 + 16775 chrM 2409 334 + 16571 41,0:2,38,1:0,32,2:0,37,3:0,184 EG2=2.8e-41 E=1.6e-50 114 chrM 5978 529 + 16775 chrM 5208 523 + 16571 233,0:3,84,5:0,39,3:0,14,0:1,69,2:0,80 EG2=1.8e-37 E=1e-46 108 chrM 1243 356 + 16775 chrM 595 352 + 16571 56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,57,1:0,18 EG2=1.3e-34 E=7.5e-44 95 chrM 2432 295 + 16775 chrM 1742 281 + 16571 26,1:0,12,4:0,25,4:0,11,2:0,57,0:1,42,1:0,24,3:0,83 EG2=2e-28 E=1.2e-37 92 chrM 10825 349 + 16775 chrM 10106 346 + 16571 299,3:0,47 EG2=5.4e-27 E=3.1e-36 48 chrM 16456 319 + 16775 chrM 14425 318 + 16571 247,2:0,54,0:1,16 EG2=4.8e-06 E=2.8e-15 26 chrM 856 48 + 16775 chrM 198 48 + 16571 48 EG2=1.4e+05 E=8.3e-05 26 chrM 5538 94 + 16775 chrM 12989 94 + 16571 94 EG2=1.4e+05 E=8.3e-05 25 chrM 3973 69 + 16775 chrM 3237 70 + 16571 38,0:1,31 EG2=4.2e+05 E=0.00025 22 chrM 12073 105 + 16775 chrM 12976 102 + 16571 69,3:0,33 EG2=1.1e+07 E=0.0066 24 chrM 6570 28 + 16775 chrM 13264 28 - 16571 28 EG2=1.3e+06 E=0.00074 # Query sequences=1 normal letters=16571 TEST lastal -W1 -M -fTAB /tmp/last-test hg19-M.fa # # a=0 b=4 A=0 B=4 e=42 d=23 x=41 y=16 z=41 D=1e+06 E=2.19598e+07 # R=10 u=0 s=2 S=0 M=1 T=0 m=10 l=1 n=10 k=1 w=1000 t=1.57796 j=3 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=0.545793 K=0.198192 # # A C G T M S K W R Y B D H V # A 2 -3 -3 -3 1 -3 -3 1 1 -3 -3 0 0 0 # C -3 2 -3 -3 1 1 -3 -3 -3 1 0 -3 0 0 # G -3 -3 2 -3 -3 1 1 -3 1 -3 0 0 -3 0 # T -3 -3 -3 2 -3 -3 1 1 -3 1 0 0 0 -3 # M 1 1 -3 -3 1 0 -3 0 0 0 -1 -1 0 0 # S -3 1 1 -3 0 1 0 -3 0 0 0 -1 -1 0 # K -3 -3 1 1 -3 0 1 0 0 0 0 0 -1 -1 # W 1 -3 -3 1 0 -3 0 1 0 0 -1 0 0 -1 # R 1 -3 1 -3 0 0 0 0 1 -3 -1 0 -1 0 # Y -3 1 -3 1 0 0 0 0 -3 1 0 -1 0 -1 # B -3 0 0 0 -1 0 0 -1 -1 0 0 0 0 0 # D 0 -3 0 0 -1 -1 0 0 0 -1 0 0 0 0 # H 0 0 -3 0 0 -1 -1 0 -1 0 0 0 0 0 # V 0 0 0 -3 0 0 -1 -1 0 -1 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 1757 chrM 6536 2451 + 16775 chrM 5790 2456 + 16571 27,0:1,2,1:0,21,1:0,1,1:0,14,1:0,3,0:1,15,3:0,19,0:8,61,1:0,3,0:1,71,0:1,2,0:1,2,1:0,2,1:0,105,0:1,4,1:0,70,1:0,2,0:1,79,1:0,4,0:1,34,0:1,5,0:2,21,1:0,2,0:1,48,0:1,2,1:0,48,1:0,2,0:1,15,1:0,7,0:1,387,0:1,6,1:0,292,0:1,4,1:0,52,0:1,2,1:0,51,1:0,2,0:1,58,1:0,4,0:1,5,1:0,3,1:0,3,0:1,1,0:1,59,0:1,2,0:1,1,0:1,23,1:0,4,0:1,23,2:0,6,1:0,2,1:0,2,0:1,3,1:0,4,1:0,17,0:1,3,1:0,7,1:0,4,0:1,5,1:0,3,0:1,10,1:0,19,1:0,5,0:1,6,1:0,11,0:1,2,1:0,93,0:2,4,1:0,4,1:0,23,0:1,1,0:1,1,0:1,182,0:1,11,1:0,286,1:0,2,0:1,20 EG2=0 E=0 1264 chrM 11669 2917 + 16775 chrM 10944 2907 + 16571 21,1:0,3,0:1,45,1:0,3,0:1,3,2:0,6,0:2,38,0:1,4,1:0,48,0:1,2,1:0,22,1:0,8,0:1,49,1:0,3,0:1,14,1:0,4,0:1,21,1:0,2,0:1,15,1:0,10,3:0,2,1:0,2,1:0,20,0:1,1,0:1,3,0:2,3,0:1,1,0:1,15,0:2,1,0:2,5,1:0,7,2:0,1,1:0,28,1:0,5,0:1,142,0:1,4,1:0,255,1:0,4,0:1,139,0:2,14,1:0,4,1:0,4,1:0,3,1:0,5,0:2,12,1:0,2,0:1,17,0:1,2,1:0,16,0:2,9,1:0,2,1:0,6,0:1,5,0:1,6,2:0,16,1:0,6,0:1,16,1:0,6,0:1,5,1:0,10,0:1,22,0:1,9,1:0,47,1:0,2,0:1,4,0:2,4,1:0,1,1:0,12,3:0,1,5:0,4,0:1,2,1:0,20,1:0,12,1:0,5,0:1,3,0:1,79,2:0,1,1:0,2,1:0,1,1:0,1,1:0,5,0:1,2,1:0,1,1:0,1,2:0,18,0:1,3,1:0,17,3:0,20,0:1,3,0:1,17,0:2,4,0:1,6,0:1,5,0:3,52,1:0,4,0:1,27,0:1,3,2:0,13,0:1,27,1:0,2,0:1,136,1:0,3,0:1,159,1:0,5,0:1,9,0:1,14,1:0,34,0:1,4,1:0,10,0:1,4,0:2,158,2:0,1,1:0,1,3:0,3,1:0,1,1:0,11,0:2,3,0:1,1,0:1,2,0:1,1,0:1,2,0:1,2,0:1,15,2:0,11,0:1,2,0:1,170,0:1,4,1:0,174,1:0,3,1:0,2,0:1,1,0:1,38,0:1,3,1:0,9,0:1,3,1:0,6,0:1,4,1:0,17,1:0,2,0:1,11,1:0,7,0:1,16,0:1,4,0:1,11,1:0,4,1:0,25,1:0,2,0:1,6,3:0,3,2:0,12,0:2,4,0:1,16,0:1,4,0:1,7,1:0,3,1:0,2,1:0,2,0:1,2,0:1,7,0:1,44,1:0,1,1:0,5 EG2=4.8e-283 E=2.4e-292 813 chrM 14883 1145 + 16775 chrM 14737 1143 + 16571 5,0:1,6,1:0,1,1:0,6,1:0,5,0:1,7,1:0,40,0:1,4,1:0,41,0:1,5,1:0,91,1:0,8,0:1,147,0:1,1,0:1,2,1:0,3,1:0,101,0:1,7,1:0,36,0:1,5,1:0,55,1:0,7,0:1,113,1:0,2,0:1,8,0:1,6,1:0,68,1:0,2,0:1,155,0:1,2,1:0,28,1:0,4,0:1,53,1:0,3,0:1,34,0:1,4,1:0,61 EG2=3.9e-176 E=2e-185 711 chrM 9633 1385 + 16775 chrM 8918 1381 + 16571 23,0:1,5,1:0,123,0:1,10,2:0,13,1:0,10,0:1,3,0:1,5,0:1,3,1:0,124,0:1,4,1:0,108,1:0,2,0:1,10,1:0,4,0:1,169,0:1,7,1:0,145,1:0,3,0:1,56,1:0,6,0:1,129,0:1,6,1:0,129,1:0,12,1:0,1,1:0,4,0:2,19,0:1,4,0:1,3,1:0,4,1:0,4,0:1,7,1:0,2,3:0,6,1:0,2,1:0,2,0:1,2,0:1,5,1:0,4,0:1,23,0:1,6,1:0,12,1:0,1,1:0,5,0:1,2,0:1,70,0:2,3,1:0,1,1:0,55 EG2=5.8e-152 E=3.1e-161 461 chrM 4084 702 + 16775 chrM 3319 704 + 16571 5,0:2,2,0:1,5,1:0,169,1:0,6,0:1,33,1:0,4,0:1,8,1:0,5,0:1,11,0:1,4,1:0,2,0:1,4,1:0,8,0:1,2,1:0,185,0:1,10,1:0,14,1:0,2,0:1,15,1:0,13,0:1,185 EG2=1.1e-92 E=5.9e-102 390 chrM 1707 603 + 16775 chrM 1047 592 + 16571 72,1:0,3,0:1,2,0:1,3,0:1,3,1:0,1,1:0,18,1:0,4,1:0,75,1:0,2,0:1,2,0:1,2,1:0,11,2:0,3,2:0,28,1:0,10,0:1,5,1:0,11,0:1,2,1:0,3,1:0,3,1:0,3,0:1,34,0:1,30,0:1,56,2:0,3,2:0,4,2:0,53,1:0,1,1:0,1,1:0,3,1:0,1,1:0,6,0:2,8,0:2,10,0:1,8,0:1,1,0:1,52,0:1,3,0:1,2,1:0,7,1:0,4,1:0,20 EG2=7.1e-76 E=4e-85 331 chrM 5399 1101 + 16775 chrM 4629 1095 + 16571 40,3:0,7,1:0,1,1:0,7,0:1,3,0:1,4,0:1,1,0:2,6,1:0,1,1:0,2,0:1,1,0:1,21,1:0,3,1:0,3,0:1,11,0:1,73,0:1,3,1:0,17,1:0,2,0:1,12,0:1,3,1:0,2,1:0,6,0:1,44,1:0,3,1:0,3,0:2,1,0:1,2,0:1,1,0:1,10,1:0,2,2:0,16,1:0,3,0:1,8,1:0,3,0:1,16,1:0,3,0:1,48,1:0,6,1:0,3,0:1,2,0:1,8,1:0,4,0:1,53,1:0,1,2:0,2,1:0,15,1:0,5,1:0,12,0:1,1,0:1,5,2:0,4,0:1,6,3:0,2,1:0,5,0:1,3,0:1,1,0:1,3,0:2,3,0:1,5,0:2,1,0:1,75,1:0,9,1:0,8,0:2,19,2:0,7,0:2,28,2:0,3,1:0,9,0:3,17,2:0,1,1:0,25,0:1,20,0:1,5,0:2,5,0:2,7,1:0,1,1:0,8,1:0,12,0:1,13,1:0,5,1:0,4,0:1,2,0:2,2,0:1,13,1:0,6,3:0,2,1:0,7,0:1,2,1:0,20,2:0,7,1:0,13,0:1,9,0:1,2,0:2,12,2:0,1,1:0,46,1:0,3,1:0,12,0:1,9,0:1,9,2:0,34 EG2=6.9e-62 E=3.9e-71 325 chrM 3617 415 + 16775 chrM 2897 400 + 16571 9,1:0,43,0:1,5,1:0,99,1:0,53,0:1,42,0:1,5,1:0,9,1:0,10,2:0,2,2:0,1,1:0,3,0:1,2,1:0,10,2:0,2,1:0,3,1:0,8,1:0,6,1:0,1,1:0,1,1:0,13,1:0,43,1:0,4,0:3,2,1:0,17 EG2=1.8e-60 E=1e-69 242 chrM 2890 560 + 16775 chrM 2171 572 + 16571 25,1:0,9,0:1,2,1:0,6,0:2,1,0:1,4,0:1,1,0:3,14,1:0,6,0:2,2,0:1,3,1:0,5,0:1,22,0:2,35,0:1,4,0:1,6,0:1,1,0:1,1,0:1,1,0:1,1,0:2,8,0:1,1,0:1,3,0:1,5,0:1,2,0:1,1,0:1,3,2:0,9,1:0,1,1:0,15,1:0,9,0:1,6,1:0,3,1:0,4,1:0,1,1:0,27,0:1,3,0:1,6,0:2,8,1:0,1,1:0,21,1:0,26,1:0,2,0:1,3,1:0,3,1:0,31,2:0,3,1:0,87,0:1,3,1:0,10,1:0,2,1:0,4,0:2,38,2:0,3,0:1,4,0:1,28 EG2=8.6e-41 E=4.9e-50 222 chrM 1234 365 + 16775 chrM 585 362 + 16571 9,0:1,9,0:1,3,1:0,24,1:0,2,1:0,2,0:1,1,0:1,12,0:1,34,0:1,4,1:0,28,2:0,5,0:1,3,0:1,5,3:0,15,0:1,3,1:0,11,2:0,8,0:1,1,0:1,13,1:0,3,0:1,4,1:0,20,1:0,52,0:1,60,1:0,18 EG2=4.7e-36 E=2.7e-45 212 chrM 2432 326 + 16775 chrM 1742 311 + 16571 18,0:1,3,1:0,1,1:0,16,1:0,1,1:0,1,2:0,19,1:0,2,1:0,1,2:0,10,2:0,55,0:1,28,0:1,4,1:0,7,1:0,2,1:0,2,0:1,24,3:0,66,0:1,2,1:0,14,4:0,3,0:1,2,0:1,1,0:1,21 EG2=1.1e-33 E=6.4e-43 208 chrM 4850 400 + 16775 chrM 4087 393 + 16571 24,1:0,6,0:1,117,1:0,3,0:1,9,0:1,5,0:1,5,0:1,4,1:0,12,1:0,5,1:0,23,0:1,3,0:1,4,1:0,3,1:0,1,1:0,3,1:0,1,1:0,1,2:0,2,1:0,3,2:0,2,1:0,3,0:1,8,1:0,11,0:1,6,1:0,2,1:0,3,0:1,21,0:1,13,0:2,50,0:1,2,1:0,3,1:0,21 EG2=9.9e-33 E=5.7e-42 138 chrM 11219 296 + 16775 chrM 10493 297 + 16571 6,0:1,7,0:1,3,0:1,3,1:0,3,1:0,34,0:1,2,1:0,15,0:1,2,1:0,21,0:1,7,0:1,3,2:0,2,0:1,6,1:0,2,1:0,7,1:0,8,1:0,7,0:3,9,0:1,4,1:0,27,1:0,5,0:1,21,0:1,5,0:1,2,2:0,9,1:0,2,0:1,59 EG2=3.9e-16 E=2.2e-25 82 chrM 9353 216 + 16775 chrM 8638 216 + 16571 110,1:0,3,0:1,4,0:1,9,1:0,25,1:0,3,1:0,3,0:1,1,0:1,44,1:0,5,0:1,4 EG2=0.0072 E=4.2e-12 57 chrM 16456 319 + 16775 chrM 14425 318 + 16571 84,1:0,3,2:0,2,1:0,6,0:1,13,0:2,5,0:1,2,0:2,8,2:0,13,1:0,9,0:1,3,0:2,8,1:0,3,1:0,4,0:1,2,1:0,19,0:1,13,1:0,4,0:1,21,1:0,15,1:0,1,1:0,12,0:1,8,1:0,3,1:0,9,0:1,17,0:1,16 EG2=6.1e+03 E=3.6e-06 42 chrM 5620 47 + 16775 chrM 5336 50 + 16571 3,1:0,4,0:1,3,0:1,2,0:1,2,0:1,8,1:0,8,0:1,15 EG2=2.2e+07 E=0.013 42 chrM 9034 64 + 16775 chrM 8312 68 + 16571 24,0:1,7,1:0,6,0:1,6,0:1,1,0:1,1,0:1,18 EG2=2.2e+07 E=0.013 46 chrM 6575 23 + 16775 chrM 13269 23 - 16571 23 EG2=2.5e+06 E=0.0015 # Query sequences=1 normal letters=16571 TEST lastal -fTAB -j4 -A2 -B2 /tmp/last-test hg19-M.fa # # a=7 b=1 A=2 B=2 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.16774e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=3 w=1000 t=0.910239 j=4 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=1.09024 K=0.30481 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 1116 chrM 6510 2477 + 16775 chrM 5764 2482 + 16571 78,2:0,35,3:0,17,0:8,445,0:1,8,0:2,1082,0:3,67,5:0,57,1:0,19,1:0,150,0:2,4,0:1,503 EG2=0 E=0 fullScore=1.13e+03 583 chrM 9353 1821 + 16775 chrM 8638 1814 + 16571 432,0:1,10,2:0,28,0:1,934,1:0,21,0:1,26,4:0,313,3:0,47 EG2=2.8e-259 E=1.4e-268 fullScore=594 545 chrM 4097 1794 + 16775 chrM 3334 1787 + 16571 914,0:2,27,2:0,26,0:1,13,10:0,70,0:3,61,1:0,670 EG2=2.7e-241 E=1.4e-250 fullScore=558 540 chrM 11243 1829 + 16775 chrM 10518 1821 + 16571 1692,8:0,129 EG2=6.3e-239 E=3.2e-248 fullScore=548 524 chrM 14904 1124 + 16775 chrM 14756 1124 + 16571 1124 EG2=2.4e-231 E=1.2e-240 fullScore=528 475 chrM 13197 1385 + 16775 chrM 12461 1388 + 16571 510,0:3,875 EG2=3.8e-208 E=2e-217 fullScore=490 203 chrM 1702 617 + 16775 chrM 1042 606 + 16571 114,2:0,92,4:0,33,1:0,27,1:0,45,0:1,32,0:1,61,6:0,54,0:1,10,0:1,85,0:1,14,2:0,34 EG2=2.3e-79 E=1.3e-88 fullScore=221 164 chrM 3629 255 + 16775 chrM 2908 255 + 16571 146,1:0,53,0:1,55 EG2=6.8e-61 E=3.8e-70 fullScore=169 131 chrM 2890 560 + 16775 chrM 2171 572 + 16571 27,0:3,8,0:3,32,0:1,15,0:1,24,0:2,37,0:2,22,0:1,13,0:2,19,0:1,66,0:2,38,1:0,32,2:0,37,3:0,184 EG2=2.9e-45 E=1.6e-54 fullScore=151 120 chrM 5978 529 + 16775 chrM 5208 523 + 16571 233,0:3,84,5:0,39,3:0,14,0:1,69,2:0,80 EG2=4.6e-40 E=2.7e-49 fullScore=131 119 chrM 1234 365 + 16775 chrM 585 362 + 16571 9,0:1,56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,57,1:0,18 EG2=1.4e-39 E=7.9e-49 fullScore=127 99 chrM 2432 295 + 16775 chrM 1742 281 + 16571 26,1:0,12,4:0,25,4:0,11,2:0,57,0:1,42,1:0,24,3:0,83 EG2=4.1e-30 E=2.3e-39 fullScore=110 52 chrM 16456 319 + 16775 chrM 14425 318 + 16571 247,2:0,54,0:1,16 EG2=7.3e-08 E=4.2e-17 fullScore=56.1 29 chrM 3973 69 + 16775 chrM 3237 70 + 16571 38,0:1,31 EG2=5.7e+03 E=3.3e-06 fullScore=32.3 26 chrM 856 48 + 16775 chrM 198 48 + 16571 48 EG2=1.5e+05 E=8.7e-05 fullScore=27.8 26 chrM 5538 94 + 16775 chrM 12989 94 + 16571 94 EG2=1.5e+05 E=8.7e-05 fullScore=28.9 24 chrM 3520 38 + 16775 chrM 2807 38 + 16571 38 EG2=1.3e+06 E=0.00077 fullScore=26.9 23 chrM 16128 49 + 16775 chrM 15975 49 + 16571 49 EG2=3.9e+06 E=0.0023 fullScore=25 22 chrM 9034 88 + 16775 chrM 8312 92 + 16571 24,0:2,20,0:2,44 EG2=1.2e+07 E=0.0069 fullScore=28 22 chrM 12073 105 + 16775 chrM 12976 102 + 16571 69,3:0,33 EG2=1.2e+07 E=0.0069 fullScore=24.7 22 chrM 14801 78 + 16775 chrM 14065 78 + 16571 78 EG2=1.2e+07 E=0.0069 fullScore=25.8 24 chrM 6570 28 + 16775 chrM 13264 28 - 16571 28 EG2=1.3e+06 E=0.00077 fullScore=25.6 # Query sequences=1 normal letters=16571 TEST lastal -fTAB -j4 -Q1 -e90 -a7 -A12 -B4 /tmp/last-test SRR001981-1k.fastq # # a=7 b=9 A=12 B=4 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.41478e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=3 w=1000 t=4.36661 j=4 Q=1 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=0.218273 K=0.335682 # # A C G T M S K W R Y B D H V # A 6 -18 -18 -18 3 -18 -18 3 3 -18 -18 1 1 1 # C -18 6 -18 -18 3 3 -18 -18 -18 3 1 -18 1 1 # G -18 -18 6 -18 -18 3 3 -18 3 -18 1 1 -18 1 # T -18 -18 -18 6 -18 -18 3 3 -18 3 1 1 1 -18 # M 3 3 -18 -18 3 0 -18 0 0 0 -2 -2 1 1 # S -18 3 3 -18 0 3 0 -18 0 0 1 -2 -2 1 # K -18 -18 3 3 -18 0 3 0 0 0 1 1 -2 -2 # W 3 -18 -18 3 0 -18 0 3 0 0 -2 1 1 -2 # R 3 -18 3 -18 0 0 0 0 3 -18 -2 1 -2 1 # Y -18 3 -18 3 0 0 0 0 -18 3 1 -2 1 -2 # B -18 1 1 1 -2 1 1 -2 -2 1 1 -1 -1 -1 # D 1 -18 1 1 -2 -2 1 1 1 -2 -1 1 -1 -1 # H 1 1 -18 1 1 -2 -2 1 -2 1 -1 -1 1 -1 # V 1 1 1 -18 1 1 -2 -2 1 -2 -1 -1 -1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 93 chrM 963 25 + 16775 SRR001981.67 6 24 + 36 18,1:0,6 EG2=5.1e+08 E=0.00031 fullScore=101 104 chrM 973 20 + 16775 SRR001981.107 7 21 + 36 17,0:1,3 EG2=4.6e+07 E=2.4e-05 fullScore=112 100 chrM 957 29 + 16775 SRR001981.202 0 31 - 36 6,0:1,8,0:2,10,1:0,4 EG2=1.1e+08 E=6.2e-05 fullScore=112 119 chrM 952 33 + 16775 SRR001981.279 0 33 - 36 33 EG2=1.8e+06 E=7.1e-07 fullScore=131 104 chrM 949 33 + 16775 SRR001981.279 1 33 - 36 33 EG2=4.6e+07 E=2.4e-05 fullScore=112 99 chrM 960 28 + 16775 SRR001981.279 0 28 - 36 28 EG2=1.4e+08 E=7.8e-05 fullScore=109 97 chrM 960 28 + 16775 SRR001981.279 5 26 - 36 9,2:0,17 EG2=2.1e+08 E=0.00012 fullScore=117 96 chrM 963 24 + 16775 SRR001981.279 0 24 - 36 24 EG2=2.7e+08 E=0.00016 fullScore=105 108 chrM 968 22 + 16775 SRR001981.346 1 25 - 36 17,0:3,5 EG2=1.9e+07 E=9.5e-06 fullScore=114 95 chrM 950 37 + 16775 SRR001981.597 0 33 - 36 12,1:0,6,2:0,10,1:0,5 EG2=3.3e+08 E=0.0002 fullScore=108 90 chrM 949 32 + 16775 SRR001981.597 5 28 - 36 10,1:0,2,1:0,6,2:0,10 EG2=9.9e+08 E=0.00062 fullScore=102 90 chrM 971 15 + 16775 SRR001981.805 21 15 + 36 15 EG2=9.9e+08 E=0.00062 fullScore=91.3 93 chrM 959 27 + 16775 SRR001981.815 1 25 - 36 10,2:0,15 EG2=5.1e+08 E=0.00031 fullScore=101 # Query sequences=1000 normal letters=35941 TEST lastal -fTAB -j4 -Q0 -e90 -a7 -A12 -B4 -b9 -r6 -q18 /tmp/last-test SRR001981-1k.fastq # # a=7 b=9 A=12 B=4 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.41478e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=3 w=1000 t=4.36661 j=4 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=0.218273 K=0.335682 # # A C G T M S K W R Y B D H V # A 6 -18 -18 -18 3 -18 -18 3 3 -18 -18 1 1 1 # C -18 6 -18 -18 3 3 -18 -18 -18 3 1 -18 1 1 # G -18 -18 6 -18 -18 3 3 -18 3 -18 1 1 -18 1 # T -18 -18 -18 6 -18 -18 3 3 -18 3 1 1 1 -18 # M 3 3 -18 -18 3 0 -18 0 0 0 -2 -2 1 1 # S -18 3 3 -18 0 3 0 -18 0 0 1 -2 -2 1 # K -18 -18 3 3 -18 0 3 0 0 0 1 1 -2 -2 # W 3 -18 -18 3 0 -18 0 3 0 0 -2 1 1 -2 # R 3 -18 3 -18 0 0 0 0 3 -18 -2 1 -2 1 # Y -18 3 -18 3 0 0 0 0 -18 3 1 -2 1 -2 # B -18 1 1 1 -2 1 1 -2 -2 1 1 -1 -1 -1 # D 1 -18 1 1 -2 -2 1 1 1 -2 -1 1 -1 -1 # H 1 1 -18 1 1 -2 -2 1 -2 1 -1 -1 1 -1 # V 1 1 1 -18 1 1 -2 -2 1 -2 -1 -1 -1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 104 chrM 973 20 + 16775 SRR001981.107 7 21 + 36 17,0:1,3 EG2=4.6e+07 E=2.4e-05 fullScore=112 96 chrM 963 23 + 16775 SRR001981.202 7 24 - 36 8,0:2,10,1:0,4 EG2=2.7e+08 E=0.00016 fullScore=111 115 chrM 951 39 + 16775 SRR001981.279 0 35 - 36 4,1:0,6,1:0,6,2:0,8,0:1,2,1:0,8 EG2=4.2e+06 E=1.8e-06 fullScore=122 92 chrM 949 23 + 16775 SRR001981.279 14 22 - 36 13,1:0,9 EG2=6.4e+08 E=0.00039 fullScore=94.9 108 chrM 968 22 + 16775 SRR001981.346 1 25 - 36 17,0:3,5 EG2=1.9e+07 E=9.5e-06 fullScore=114 90 chrM 971 15 + 16775 SRR001981.805 21 15 + 36 15 EG2=9.9e+08 E=0.00062 fullScore=91.2 90 chrM 971 15 + 16775 SRR001981.815 11 15 - 36 15 EG2=9.9e+08 E=0.00062 fullScore=99 # Query sequences=1000 normal letters=35941 TEST lastal -j4 -Qkeep -e90 -a7 -A12 -B4 -b9 -r6 -q18 /tmp/last-test SRR001981-1k.fastq # # a=7 b=9 A=12 B=4 e=90 d=66 x=89 y=44 z=89 D=1e+06 E=2.41478e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=3 w=1000 t=4.36661 j=4 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=0.218273 K=0.335682 # # A C G T M S K W R Y B D H V # A 6 -18 -18 -18 3 -18 -18 3 3 -18 -18 1 1 1 # C -18 6 -18 -18 3 3 -18 -18 -18 3 1 -18 1 1 # G -18 -18 6 -18 -18 3 3 -18 3 -18 1 1 -18 1 # T -18 -18 -18 6 -18 -18 3 3 -18 3 1 1 1 -18 # M 3 3 -18 -18 3 0 -18 0 0 0 -2 -2 1 1 # S -18 3 3 -18 0 3 0 -18 0 0 1 -2 -2 1 # K -18 -18 3 3 -18 0 3 0 0 0 1 1 -2 -2 # W 3 -18 -18 3 0 -18 0 3 0 0 -2 1 1 -2 # R 3 -18 3 -18 0 0 0 0 3 -18 -2 1 -2 1 # Y -18 3 -18 3 0 0 0 0 -18 3 1 -2 1 -2 # B -18 1 1 1 -2 1 1 -2 -2 1 1 -1 -1 -1 # D 1 -18 1 1 -2 -2 1 1 1 -2 -1 1 -1 -1 # H 1 1 -18 1 1 -2 -2 1 -2 1 -1 -1 1 -1 # V 1 1 1 -18 1 1 -2 -2 1 -2 -1 -1 -1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=104 EG2=4.6e+07 E=2.4e-05 fullScore=112 s chrM 973 20 + 16775 ttttttttattttttAA-AAA s SRR001981.107 7 21 + 36 TTTTTTTTATTTTTTAATAAA q SRR001981.107 IIIIIIIIGIIIIII:IIIII p ~~~~~~~~~~~~~~~~~'### a score=96 EG2=2.7e+08 E=0.00016 fullScore=111 s chrM 963 23 + 16775 ttttttaa--ttttttttttatttt s SRR001981.202 7 24 - 36 TTTTTTAACATTTTTTTTTT-TTTT q SRR001981.202 &IIIII3II@IIIIIIIIII-IIII p ~~~~~~~~..''&&&%%%%$(###" a score=115 EG2=4.2e+06 E=1.8e-06 fullScore=122 s chrM 951 39 + 16775 ttttctttgttattttttaatttttttt-ttattttttAA s SRR001981.279 0 35 - 36 TTTT-TTTGTT-TTTTTT--TTTTTTTTGTT-TTTTTTAA q SRR001981.279 5(&%-5.&%*$-&-,7)+--,*)-***2$I2-5D$37$II p #%%%'*-093/.,,,,--32~~~~~~~~*((**++,,,*& a score=92 EG2=6.4e+08 E=0.00039 fullScore=94.9 s chrM 949 23 + 16775 ttttttctttgttattttttaat s SRR001981.279 14 22 - 36 TTTTTTTTTTGTT-TTTTTTAAT q SRR001981.279 )+,*)-***2$I2-5D$37$III p ~~~~~~(*,/>51/.//0120,& a score=108 EG2=1.9e+07 E=9.5e-06 fullScore=114 s chrM 968 22 + 16775 taattttttttttattt---tttAA s SRR001981.346 1 25 - 36 TAATTTTTTTTTTATTTATTTTTAA q SRR001981.346 BIIAIIEIIIIIIIIFIIIIIIIII p ~~~~~~~~~~~~~~~~~*%$#$$$# a score=90 EG2=9.9e+08 E=0.00062 fullScore=91.2 s chrM 971 15 + 16775 ttttttttttatttt s SRR001981.805 21 15 + 36 TTTTTTTTTTATTTT q SRR001981.805 IIIIIIIIII;I0II p ~~~~~~~~~~~~~~~ a score=90 EG2=9.9e+08 E=0.00062 fullScore=99 s chrM 971 15 + 16775 ttttttttttatttt s SRR001981.815 11 15 - 36 TTTTTTTTTTATTTT q SRR001981.815 G,I'9I/D3+IEII7 p ~~~~~~~~~~~~~~~ # Query sequences=1000 normal letters=35941 TEST lastal -N2 /tmp/last-test hg19-M.fa # # a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.13155e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 N=2 k=1 W=3 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=108 EG2=1.3e-34 E=7.5e-44 s chrM 1243 356 + 16775 CCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAA-AGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAA-CCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTG s chrM 595 352 + 16571 CCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAA---ATCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAG-AAGCCGGCGTAAAGAGTG a score=26 EG2=1.4e+05 E=8.3e-05 s chrM 856 48 + 16775 TAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATT s chrM 198 48 + 16571 TAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATT a score=24 EG2=1.3e+06 E=0.00074 s chrM 6570 28 + 16775 GTCGATAAGAAGAGGAATTGAACCTCTG s chrM 13264 28 - 16571 gttgttaagaagaggaattgaacctctg # Query sequences=1 normal letters=16571 TEST tr Tt Uu < hg19-M.fa | lastal -N2 /tmp/last-test # # a=7 b=1 A=7 B=1 e=22 d=13 x=21 y=9 z=21 D=1e+06 E=1.13155e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 N=2 k=1 W=3 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=108 EG2=1.3e-34 E=7.5e-44 s chrM 1243 356 + 16775 CCACAAAGCATGGCACTGAAGATGCCAAGATGGTACCTACTATACCTGTGGGCAAA-AGACTTAGTCCTAACCTTTCTATTGGTTTTTGCTAGACATATACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCAAACCTTTCTTCCCAAGCAAAAGGAGCAGGTATCAGGCACACTCAGCAGTAGCCCAAGACGCCTTGCTTAAGCCACACCCCCACGGGTACTCAGCAGTAATTAACCTTAAGCAATAAGTGTAAACTTGACTTAGCCATAGCAA-CCCAGGGTTGGTAAATCTTGTGCCAGCCACCGCGGTCATACAAGAAACCCAAATCAATAGCTACCCGGCGTAAAGAGTG s chrM 595 352 + 16571 CCTCAAAGCAATACACTGAAAATGTTTAGACGGGCTCACATCACCCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAA---ATCACCACGATCAAAAGGGACAAGCATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCT-AGCCACACCCCCACGGG-AAACAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAG-AAGCCGGCGTAAAGAGTG a score=26 EG2=1.4e+05 E=8.3e-05 s chrM 856 48 + 16775 TAAATGGTGCTATTTAGTGAATGCTTGTCGGACATATTTTTATCAATT s chrM 198 48 + 16571 TAAAGTGTGTTAATTAATTAATGCTTGTAGGACATAATAATAACAATT a score=24 EG2=1.3e+06 E=0.00074 s chrM 6570 28 + 16775 GTCGATAAGAAGAGGAATTGAACCTCTG s chrM 13264 28 - 16571 gttgttaagaagaggaattgaacctctg # Query sequences=1 normal letters=16571 TEST lastal -W19 -z50% -fTAB /tmp/last-test hg19-M.fa # # a=7 b=1 A=7 B=1 e=22 d=13 x=10 y=9 z=10 D=1e+06 E=1.13155e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=19 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 586 chrM 7095 1072 + 16775 chrM 6355 1072 + 16571 1072 EG2=3.9e-262 E=2e-271 524 chrM 14904 1124 + 16775 chrM 14756 1124 + 16571 1124 EG2=1.3e-232 E=6.6e-242 404 chrM 9824 918 + 16775 chrM 9109 918 + 16571 918 EG2=1.7e-175 E=8.9e-185 376 chrM 11669 982 + 16775 chrM 10944 982 + 16571 982 EG2=3.6e-162 E=1.9e-171 309 chrM 4097 689 + 16775 chrM 3334 689 + 16571 689 EG2=2.8e-130 E=1.5e-139 251 chrM 6645 445 + 16775 chrM 5902 445 + 16571 445 EG2=1.1e-102 E=6.2e-112 249 chrM 13901 681 + 16775 chrM 13168 681 + 16571 681 EG2=1e-101 E=5.6e-111 242 chrM 13197 668 + 16775 chrM 12461 671 + 16571 510,0:3,158 EG2=2.2e-98 E=1.2e-107 223 chrM 8486 501 + 16775 chrM 7745 501 + 16571 501 EG2=2.4e-89 E=1.3e-98 160 chrM 3629 255 + 16775 chrM 2908 255 + 16571 146,1:0,53,0:1,55 EG2=2.3e-59 E=1.3e-68 122 chrM 3112 338 + 16775 chrM 2409 334 + 16571 41,0:2,38,1:0,32,2:0,37,3:0,184 EG2=2.8e-41 E=1.6e-50 110 chrM 5481 410 + 16775 chrM 4711 410 + 16571 410 EG2=1.5e-35 E=8.4e-45 105 chrM 1702 210 + 16775 chrM 1042 208 + 16571 109,2:0,99 EG2=3.5e-33 E=2e-42 90 chrM 5171 269 + 16775 chrM 4402 268 + 16571 49,1:0,219 EG2=4.9e-26 E=2.8e-35 87 chrM 10825 299 + 16775 chrM 10106 299 + 16571 299 EG2=1.3e-24 E=7.5e-34 86 chrM 1394 205 + 16775 chrM 744 203 + 16571 53,1:0,19,1:0,55,0:1,57,1:0,18 EG2=3.9e-24 E=2.2e-33 83 chrM 2516 211 + 16775 chrM 1815 208 + 16571 58,0:1,42,1:0,24,3:0,83 EG2=1e-22 E=6e-32 72 chrM 9353 216 + 16775 chrM 8638 216 + 16571 216 EG2=1.8e-17 E=1e-26 71 chrM 4850 167 + 16775 chrM 4087 167 + 16571 167 EG2=5.4e-17 E=3.1e-26 69 chrM 5978 181 + 16775 chrM 5208 181 + 16571 181 EG2=4.8e-16 E=2.8e-25 67 chrM 9612 151 + 16775 chrM 8897 151 + 16571 151 EG2=4.3e-15 E=2.5e-24 62 chrM 11367 148 + 16775 chrM 10642 148 + 16571 148 EG2=1e-12 E=6e-22 61 chrM 12684 251 + 16775 chrM 11959 251 + 16571 251 EG2=3.1e-12 E=1.8e-21 60 chrM 12944 128 + 16775 chrM 12211 128 + 16571 128 EG2=9.2e-12 E=5.4e-21 48 chrM 8266 214 + 16775 chrM 7524 212 + 16571 45,1:0,17,1:0,150 EG2=4.8e-06 E=2.8e-15 48 chrM 16456 319 + 16775 chrM 14425 318 + 16571 247,2:0,54,0:1,16 EG2=4.8e-06 E=2.8e-15 45 chrM 1914 137 + 16775 chrM 1248 136 + 16571 33,1:0,31,1:0,41,0:1,30 EG2=0.00013 E=7.4e-14 41 chrM 11243 77 + 16775 chrM 10518 77 + 16571 77 EG2=0.01 E=6e-12 40 chrM 2216 60 + 16775 chrM 1546 60 + 16571 60 EG2=0.031 E=1.8e-11 37 chrM 8183 51 + 16775 chrM 7446 51 + 16571 51 EG2=0.82 E=4.8e-10 33 chrM 1296 71 + 16775 chrM 649 71 + 16571 71 EG2=66 E=3.8e-08 33 chrM 2122 53 + 16775 chrM 1450 53 + 16571 53 EG2=66 E=3.8e-08 26 chrM 856 48 + 16775 chrM 198 48 + 16571 48 EG2=1.4e+05 E=8.3e-05 26 chrM 5538 94 + 16775 chrM 12989 94 + 16571 94 EG2=1.4e+05 E=8.3e-05 25 chrM 3973 69 + 16775 chrM 3237 70 + 16571 38,0:1,31 EG2=4.2e+05 E=0.00025 22 chrM 2478 22 + 16775 chrM 1783 22 + 16571 22 EG2=1.1e+07 E=0.0066 24 chrM 6570 28 + 16775 chrM 13264 28 - 16571 28 EG2=1.3e+06 E=0.00074 # Query sequences=1 normal letters=16571 TEST lastal -W19 -x1g -fTAB /tmp/last-test hg19-M.fa # # a=7 b=1 A=7 B=1 e=22 d=13 x=8 y=8 z=21 D=1e+06 E=1.13155e+07 # R=10 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 W=19 w=1000 t=0.910239 j=3 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # lambda=1.09602 K=0.335388 # # A C G T M S K W R Y B D H V # A 1 -1 -1 -1 0 -1 -1 0 0 -1 -1 0 0 0 # C -1 1 -1 -1 0 0 -1 -1 -1 0 0 -1 0 0 # G -1 -1 1 -1 -1 0 0 -1 0 -1 0 0 -1 0 # T -1 -1 -1 1 -1 -1 0 0 -1 0 0 0 0 -1 # M 0 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 # S -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 # K -1 -1 0 0 -1 0 0 0 0 0 0 0 0 0 # W 0 -1 -1 0 0 -1 0 0 0 0 0 0 0 0 # R 0 -1 0 -1 0 0 0 0 0 -1 0 0 0 0 # Y -1 0 -1 0 0 0 0 0 -1 0 0 0 0 0 # B -1 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 1107 chrM 6510 2477 + 16775 chrM 5764 2482 + 16571 78,2:0,35,3:0,17,0:8,450,0:3,1085,0:3,67,5:0,57,1:0,19,1:0,152,0:3,505 EG2=0 E=0 540 chrM 11243 1829 + 16775 chrM 10518 1821 + 16571 1692,8:0,129 EG2=3.1e-240 E=1.6e-249 538 chrM 4097 1794 + 16775 chrM 3334 1787 + 16571 914,0:2,27,2:0,44,9:0,66,0:3,61,1:0,670 EG2=2.8e-239 E=1.4e-248 524 chrM 14904 1124 + 16775 chrM 14756 1124 + 16571 1124 EG2=1.3e-232 E=6.6e-242 509 chrM 9353 1389 + 16775 chrM 8638 1389 + 16571 1389 EG2=1.8e-225 E=9.1e-235 473 chrM 13197 1385 + 16775 chrM 12461 1388 + 16571 510,0:3,875 EG2=2.4e-208 E=1.3e-217 186 chrM 1702 574 + 16775 chrM 1042 564 + 16571 114,2:0,92,4:0,33,1:0,27,1:0,45,0:1,32,0:1,61,6:0,55,0:2,101 EG2=9.8e-72 E=5.5e-81 160 chrM 3629 255 + 16775 chrM 2908 255 + 16571 146,1:0,53,0:1,55 EG2=2.3e-59 E=1.3e-68 122 chrM 3112 338 + 16775 chrM 2409 334 + 16571 41,0:2,38,1:0,32,2:0,37,3:0,184 EG2=2.8e-41 E=1.6e-50 114 chrM 5978 529 + 16775 chrM 5208 523 + 16571 233,0:3,84,5:0,39,3:0,14,0:1,69,2:0,80 EG2=1.8e-37 E=1e-46 108 chrM 1243 356 + 16775 chrM 595 352 + 16571 56,0:1,82,3:0,63,1:0,19,1:0,55,0:1,57,1:0,18 EG2=1.3e-34 E=7.5e-44 95 chrM 2432 295 + 16775 chrM 1742 281 + 16571 26,1:0,12,4:0,25,4:0,11,2:0,57,0:1,42,1:0,24,3:0,83 EG2=2e-28 E=1.2e-37 92 chrM 10825 349 + 16775 chrM 10106 346 + 16571 299,3:0,47 EG2=5.4e-27 E=3.1e-36 26 chrM 856 48 + 16775 chrM 198 48 + 16571 48 EG2=1.4e+05 E=8.3e-05 26 chrM 5538 94 + 16775 chrM 12989 94 + 16571 94 EG2=1.4e+05 E=8.3e-05 24 chrM 6570 28 + 16775 chrM 13264 28 - 16571 28 EG2=1.3e+06 E=0.00074 # Query sequences=1 normal letters=16571 TEST lastal -L9 -m0 -j1 -q0 -d5 -n6 -fTAB /tmp/last-test tttttccccc.fa # # a=7 b=1 A=7 B=1 e=5 d=5 x=4 y=0 z=4 D=1e+06 # R=10 u=0 s=2 S=0 M=0 T=0 m=0 l=1 L=9 n=6 k=1 W=3 w=1000 t=-1 j=1 Q=0 # /tmp/last-test # Reference sequences=2 normal letters=17803 # # A C G T # A 1 0 0 0 # C 0 1 0 0 # G 0 0 1 0 # T 0 0 0 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 6 chrM 7918 8 + 16775 tttttccccc 0 8 + 10 8 8 chrM 4594 9 + 16775 tttttccccc 0 9 + 10 9 9 chrM 8831 10 + 16775 tttttccccc 0 10 - 10 10 7 chrM 15299 10 + 16775 tttttccccc 0 10 - 10 10 7 chrM 1292 10 + 16775 tttttccccc 0 10 - 10 10 6 chrM 3866 9 + 16775 tttttccccc 0 9 - 10 9 8 chrM 4223 9 + 16775 tttttccccc 0 9 - 10 9 7 chrM 8832 9 + 16775 tttttccccc 0 9 - 10 9 # Query sequences=1 normal letters=10 TEST lastal -Q1 -T1 -j1 -s0 /tmp/last-test SRR001981-1k.fastq # # a=21 b=9 A=21 B=9 e=102 d=102 x=101 y=44 z=101 D=1e+06 E=5.09225e+07 # R=01 u=2 s=0 S=0 M=0 T=1 m=10 l=1 n=10 k=1 w=1000 t=4.36661 j=1 Q=1 # /tmp/last-test # Reference sequences=1000 normal letters=35941 # lambda=0.229011 K=0.710602 # # A C G T M S K W R Y B D H V # A 6 -18 -18 -18 3 -18 -18 3 3 -18 -18 1 1 1 # C -18 6 -18 -18 3 3 -18 -18 -18 3 1 -18 1 1 # G -18 -18 6 -18 -18 3 3 -18 3 -18 1 1 -18 1 # T -18 -18 -18 6 -18 -18 3 3 -18 3 1 1 1 -18 # M 3 3 -18 -18 3 0 -18 0 0 0 -2 -2 1 1 # S -18 3 3 -18 0 3 0 -18 0 0 1 -2 -2 1 # K -18 -18 3 3 -18 0 3 0 0 0 1 1 -2 -2 # W 3 -18 -18 3 0 -18 0 3 0 0 -2 1 1 -2 # R 3 -18 3 -18 0 0 0 0 3 -18 -2 1 -2 1 # Y -18 3 -18 3 0 0 0 0 -18 3 1 -2 1 -2 # B -18 1 1 1 -2 1 1 -2 -2 1 1 -1 -1 -1 # D 1 -18 1 1 -2 -2 1 1 1 -2 -1 1 -1 -1 # H 1 1 -18 1 1 -2 -2 1 -2 1 -1 -1 1 -1 # V 1 1 1 -18 1 1 -2 -2 1 -2 -1 -1 -1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=103 EG2=4e+07 E=1.3e-05 s SRR001981.110 0 21 + 36 GCTTACAAATAAAGACTGTTC q SRR001981.110 IIIIIIIIIIIIIIIIIIIII s SRR001981.24 15 21 - 36 GCTTGCAAATAAAGACTGTTC q SRR001981.24 I+III a score=108 EG2=1.3e+07 E=3.8e-06 s SRR001981.412 14 22 + 36 ATTTTTCACTTATACACATAAT q SRR001981.412 IIIIIIIIIIIIIIAIIIII3I s SRR001981.172 0 22 - 36 ATTTTTCACTTATACATATAAT q SRR001981.172 II=.+8III2IIIIIIIIIIII a score=182 EG2=0.56 E=1.3e-14 s SRR001981.589 0 34 + 36 GTTTTGAGCAGCTAATTACCAGTGATAACGTTCC q SRR001981.589 I@IIIAIIIGIDIIAIIIIII,I9'II-I%%II, s SRR001981.293 2 34 - 36 GTTTTGAGCAGCTAATTACCAGTGCTAACGATCC q SRR001981.293 IFII>IIIIIIIIIIIIIIIIIIIIIIII3IBIII8+.;?-?I s SRR001981.530 6 30 - 36 GATTATTTGATGACCGAAATTTGGAAAAAC q SRR001981.530 IIIIIIIHIIIIIIII s SRR001981.530 18 18 - 36 ACCGAAATTTGGAAAAAC q SRR001981.530 IIIIIIIIIIIIIIIIII a score=182 EG2=0.56 E=1.3e-14 s SRR001981.293 0 34 + 36 GGATCGTTAGCACTGGTAATTAGCTGCTCAAAAC q SRR001981.293 IIIIIIIIIIIIIIIII@IIIIIFI s SRR001981.589 2 34 - 36 GGAACGTTATCACTGGTAATTAGCTGCTCAAAAC q SRR001981.589 ,II%%I-II'9I,IIIIIIAIIDIGIIIAIII@I a score=102 EG2=5.1e+07 E=1.7e-05 s SRR001981.483 0 25 + 36 GAGGTATGACATTCCATATTCAGAC q SRR001981.483 IIIIIIIIAIIIIII9IIII s SRR001981.873 11 25 - 36 GAAGTATGACATTCCATATTCTGAC q SRR001981.873 IIIIIIIIIIIIHIIIIIIIIIIII # Query sequences=1000 normal letters=35941 # # a=10 b=1 A=10 B=1 e=36 d=20 x=35 y=18 z=35 D=1e+06 E=7.76903e+08 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=1.82048 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=507 # lambda=0.545487 K=0.26232 # # A C G T M S K W R Y B D H V # A 2 -2 -2 -2 1 -2 -2 1 1 -2 -2 0 0 0 # C -2 2 -2 -2 1 1 -2 -2 -2 1 0 -2 0 0 # G -2 -2 2 -2 -2 1 1 -2 1 -2 0 0 -2 0 # T -2 -2 -2 2 -2 -2 1 1 -2 1 0 0 0 -2 # M 1 1 -2 -2 1 0 -2 0 0 0 0 0 0 0 # S -2 1 1 -2 0 1 0 -2 0 0 0 0 0 0 # K -2 -2 1 1 -2 0 1 0 0 0 0 0 0 0 # W 1 -2 -2 1 0 -2 0 1 0 0 0 0 0 0 # R 1 -2 1 -2 0 0 0 0 1 -2 0 0 0 0 # Y -2 1 -2 1 0 0 0 0 -2 1 0 0 0 0 # B -2 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 # N 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=558 EG2=1.7e-115 E=5e-132 s LTR22B1#LTR/ERVK 0 521 + 526 TGTGGGGGTTCAGTCAGGNTGGTGGGAAAAATTNTAAGACGNAGTTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGAAGGTTTTGCANAAGCCTCAGGATAGGGTTATGGCTGAAGGCAGCCTAATC--CTTACCTTGAGTTA-ATAGCTTAGGGTAGNTAACANAGGAATGTAGAGGAGTTTATCTAAAT-AGCTTGTTTACTCATGTGGTCCTAAGACCAACCTTTGATCATCCGCGGGTGCATGATTGCTCTCTACTCGGGNGCGGGGGTGGGCAATCGGCAACCAGGTTAATTACCCTCTAGTGGTGTTTACTCGAGACCTTTGTCATTTNNCGNNNAATCTGTGCTGAATAAATGCNAGCNNNGCCGGCTAGTCGGGGCCGCGGCTG---CNACTCTTTACAGCACCCTCCTTGGNGTCTGTGAGCGGCCCGGACCCTCAGCCGGACTGACA-GGCANAATATCTGTGTC--AGTGTACGTTATTCATCCGTCGTTGGGTCAGGGTCTGCGGGACGGACCC s LTR22C#LTR/ERVK 0 505 + 509 TGTAGGGGNTCGGTCAGGGTGGTGGGAGAAATTGTAAAAATAAATTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGGAGGTTTTGCAAAAGCTTCAGNAAAGGGTT-TGGCTGAAGGCAGCCGAATCCTCTTANCTTGAGTTANANAGCTNAGGGTAGATANCAAAGGAATGTAAAGGAGTTTATCTAAATGNGCTTGTTTACTCATGTGGTCCTAAGACCGACCTTTGATCAT--TTGTGCGCAGGACTGCTCTCTNCTCGGGG----------------GGCGGCCATGTTAATTACCCACAAGTNGTGTTGACTCGAGGCCTTTGTCATT-------AAATCTGTACTGAATAAATGCCCGCAGCGCCAGCTTGTCAGGGCCGCGGCTGCTACAACTCTTTNCGNCGNNCGNCTNGGNNTCTGTGAGCGGCCCGGTCCCTTAGCCGCNCTGNCANNNCTGAATATCTGTGTCTGAGTGCACGTTNTTCATCCGTCGCGCGGCCAGGGTCTGCGGGTCAGACCC # Query sequences=1 normal letters=485 # # a=10 b=1 A=10 B=1 e=36 d=20 x=35 y=18 z=35 D=1e+06 E=7.76903e+08 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=1.82048 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=507 # lambda=0.545487 K=0.26232 # # A C G T M S K W R Y B D H V N # A 2 -2 -2 -2 1 -2 -2 1 1 -2 -2 0 0 0 0 # C -2 2 -2 -2 1 1 -2 -2 -2 1 0 -2 0 0 0 # G -2 -2 2 -2 -2 1 1 -2 1 -2 0 0 -2 0 0 # T -2 -2 -2 2 -2 -2 1 1 -2 1 0 0 0 -2 0 # M 1 1 -2 -2 1 0 -2 0 0 0 0 0 0 0 0 # S -2 1 1 -2 0 1 0 -2 0 0 0 0 0 0 0 # K -2 -2 1 1 -2 0 1 0 0 0 0 0 0 0 0 # W 1 -2 -2 1 0 -2 0 1 0 0 0 0 0 0 0 # R 1 -2 1 -2 0 0 0 0 1 -2 0 0 0 0 0 # Y -2 1 -2 1 0 0 0 0 -2 1 0 0 0 0 0 # B -2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=572 EG2=8.1e-119 E=7e-136 s LTR22B1#LTR/ERVK 0 521 + 526 TGTGGGGGTTCAGTCAGGNTGGTGGGAAAAATTNTAAGACGNAGTTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGAAGGTTTTGCANAAGCCTCAGGATAGGGTTATGGCTGAAGGCAGCCTAATC--CTTACCTTGAGTTA-ATAGCTTAGGGTAGNTAACANAGGAATGTAGAGGAGTTTATCTAAAT-AGCTTGTTTACTCATGTGGTCCTAAGACCAACCTTTGATCATCCGCGGGTGCATGATTGCTCTCTACTCGGGNGCGGGGGTGGGCAATCGGCAACCAGGTTAATTACCCTCTAGTGGTGTTTACTCGAGACCTTTGTCATTTNNCGNNNAATCTGTGCTGAATAAATGCNAGCNNNGCCGGCTAGTCGGGGCCGCGGCTG---CNACTCTTTACAGCACCCTCCTTGGNGTCTGTGAGCGGCCCGGACCCTCAGCCGGACTGACA-GGCANAATATCTGTGTC--AGTGTACGTTATTCATCCGTCGTTGGGTCAGGGTCTGCGGGACGGACCC s LTR22C#LTR/ERVK 0 505 + 509 TGTAGGGGNTCGGTCAGGGTGGTGGGAGAAATTGTAAAAATAAATTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGGAGGTTTTGCAAAAGCTTCAGNAAAGGGTT-TGGCTGAAGGCAGCCGAATCCTCTTANCTTGAGTTANANAGCTNAGGGTAGATANCAAAGGAATGTAAAGGAGTTTATCTAAATGNGCTTGTTTACTCATGTGGTCCTAAGACCGACCTTTGATCAT--TTGTGCGCAGGACTGCTCTCTNCTCGGG----------------GGGCGGCCATGTTAATTACCCACAAGTNGTGTTGACTCGAGGCCTTTGTCATT-------AAATCTGTACTGAATAAATGCCCGCAGCGCCAGCTTGTCAGGGCCGCGGCTGCTACAACTCTTTNCGNCGNNCGNCTNGGNNTCTGTGAGCGGCCCGGTCCCTTAGCCGCNCTGNCANNNCTGAATATCTGTGTCTGAGTGCACGTTNTTCATCCGTCGCGCGGCCAGGGTCTGCGGGTCAGACCC # Query sequences=1 normal letters=485 # # a=10 b=1 A=10 B=1 e=36 d=20 x=35 y=18 z=35 D=1e+06 E=7.76903e+08 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=1.82048 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=507 # lambda=0.545487 K=0.26232 # # A C G T M S K W R Y B D H V N # A 2 -2 -2 -2 1 -2 -2 1 1 -2 -2 0 0 0 0 # C -2 2 -2 -2 1 1 -2 -2 -2 1 0 -2 0 0 0 # G -2 -2 2 -2 -2 1 1 -2 1 -2 0 0 -2 0 0 # T -2 -2 -2 2 -2 -2 1 1 -2 1 0 0 0 -2 0 # M 1 1 -2 -2 1 0 -2 0 0 0 0 0 0 0 0 # S -2 1 1 -2 0 1 0 -2 0 0 0 0 0 0 0 # K -2 -2 1 1 -2 0 1 0 0 0 0 0 0 0 0 # W 1 -2 -2 1 0 -2 0 1 0 0 0 0 0 0 0 # R 1 -2 1 -2 0 0 0 0 1 -2 0 0 0 0 0 # Y -2 1 -2 1 0 0 0 0 -2 1 0 0 0 0 0 # B -2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # D 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 0 # H 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 0 # V 0 0 0 -2 0 0 0 0 0 0 0 0 0 0 0 # N 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=602 EG2=6.4e-126 E=2.5e-144 s LTR22B1#LTR/ERVK 0 521 + 526 TGTGGGGGTTCAGTCAGGNTGGTGGGAAAAATTNTAAGACGNAGTTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGAAGGTTTTGCANAAGCCTCAGGATAGGGTTATGGCTGAAGGCAGCCTAATC--CTTACCTTGAGTTA-ATAGCTTAGGGTAGNTAACANAGGAATGTAGAGGAGTTTATCTAAAT-AGCTTGTTTACTCATGTGGTCCTAAGACCAACCTTTGATCATCCGCGGGTGCATGATTGCTCTCTACTCGGGNGCGGGGGTGGGCAATCGGCAACCAGGTTAATTACCCTCTAGTGGTGTTTACTCGAGACCTTTGTCATTTNNCGNNNAATCTGTGCTGAATAAATGCNAGCNNNGCCGGCTAGTCGGGGCCGCGGCTG---CNACTCTTTACAGCACCCTCCTTGGNGTCTGTGAGCGGCCCGGACCCTCAGCCGGACTGACA-GGCANAATATCTGTGTC--AGTGTACGTTATTCATCCGTCGTTGGGTCAGGGTCTGCGGGACGGACCC s LTR22C#LTR/ERVK 0 505 + 509 TGTAGGGGNTCGGTCAGGGTGGTGGGAGAAATTGTAAAAATAAATTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGGAGGTTTTGCAAAAGCTTCAGNAAAGGGTT-TGGCTGAAGGCAGCCGAATCCTCTTANCTTGAGTTANANAGCTNAGGGTAGATANCAAAGGAATGTAAAGGAGTTTATCTAAATGNGCTTGTTTACTCATGTGGTCCTAAGACCGACCTTTGATCAT--TTGTGCGCAGGACTGCTCTCTNCTCGGGG----------------GGCGGCCATGTTAATTACCCACAAGTNGTGTTGACTCGAGGCCTTTGTCATT-------AAATCTGTACTGAATAAATGCCCGCAGCGCCAGCTTGTCAGGGCCGCGGCTGCTACAACTCTTTNCGNCGNNCGNCTNGGNNTCTGTGAGCGGCCCGGTCCCTTAGCCGCNCTGNCANNNCTGAATATCTGTGTCTGAGTGCACGTTNTTCATCCGTCGCGCGGCCAGGGTCTGCGGGTCAGACCC # Query sequences=1 normal letters=485 # # a=128 b=1 A=128 B=1 e=210 d=117 x=209 y=109 z=209 D=1e+06 E=9.80233e+08 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=10.9229 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=507 # lambda=0.0914364 K=0.214039 # # A C G T M S K W R Y B D H V # A 12 -12 -12 -12 6 -12 -12 6 6 -12 -12 2 2 2 # C -12 12 -12 -12 6 6 -12 -12 -12 6 2 -12 2 2 # G -12 -12 12 -12 -12 6 6 -12 6 -12 2 2 -12 2 # T -12 -12 -12 12 -12 -12 6 6 -12 6 2 2 2 -12 # M 6 6 -12 -12 6 0 -12 0 0 0 -3 -3 2 2 # S -12 6 6 -12 0 6 0 -12 0 0 2 -3 -3 2 # K -12 -12 6 6 -12 0 6 0 0 0 2 2 -3 -3 # W 6 -12 -12 6 0 -12 0 6 0 0 -3 2 2 -3 # R 6 -12 6 -12 0 0 0 0 6 -12 -3 2 -3 2 # Y -12 6 -12 6 0 0 0 0 -12 6 2 -3 2 -3 # B -12 2 2 2 -3 2 2 -3 -3 2 2 -1 -1 -1 # D 2 -12 2 2 -3 -3 2 2 2 -3 -1 2 -1 -1 # H 2 2 -12 2 2 -3 -3 2 -3 2 -1 -1 2 -1 # V 2 2 2 -12 2 2 -3 -3 2 -3 -1 -1 -1 2 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=2688 EG2=3.9e-90 E=3.6e-104 s LTR22B1#LTR/ERVK 0 521 + 526 TGTGGGGGTTCAGTCAGGNTGGTGGGAAAAATTNTAAGACGNAGTTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGAAGGTTTTGCANAAGCCTCAGGATAGGGTTATGGCTGAAGGCAGCCTAATC--CTTACCTTGAGTTA-ATAGCTTAGGGTAGNTAACANAGGAATGTAGAGGAGTTTATCTAAAT-AGCTTGTTTACTCATGTGGTCCTAAGACCAACCTTTGATCATCCGCGGGTGCATGATTGCTCTCTACTCGGGNGCGGGGGTGGGCAATCGGCAACCAGGTTAATTACCCTCTAGTGGTGTTTACTCGAGACCTTTGTCATTTNNCGNNNAATCTGTGCTGAATAAATGCNAGCNNNGCCGGCTAGTCGGGGCCGCGGCTG---CNACTCTTTACAGCACCCTCCTTGGNGTCTGTGAGCGGCCCGGACCCTCAGCCGGACTGACA---GGCANAATATCTGTGTCAGTGTACGTTATTCATCCGTCGTTGGGTCAGGGTCTGCGGGACGGACCC s LTR22C#LTR/ERVK 0 505 + 509 TGTAGGGGNTCGGTCAGGGTGGTGGGAGAAATTGTAAAAATAAATTATAGGAAATAGACACAAACCTTCTTGGAAGGCCGGGAGGTTTTGCAAAAGCTTCAGNAAAGGGTT-TGGCTGAAGGCAGCCGAATCCTCTTANCTTGAGTTANANAGCTNAGGGTAGATANCAAAGGAATGTAAAGGAGTTTATCTAAATGNGCTTGTTTACTCATGTGGTCCTAAGACCGACCTTTGATCAT--TTGTGCGCAGGACTGCTCTCTNCTCGGG----------------GGGCGGCCATGTTAATTACCCACAAGTNGTGTTGACTCGAGGCCTTTGTCATT-------AAATCTGTACTGAATAAATGCCCGCAGCGCCAGCTTGTCAGGGCCGCGGCTGCTACAACTCTTTNCGNCGNNCGNCTNGGNNTCTGTGAGCGGCCCGGTCCCTTAGCCGCNCTGNCANNNCTGAATATCTGTGTCTGAGTGCACGTTNTTCATCCGTCGCGCGGCCAGGGTCTGCGGGTCAGACCC # Query sequences=1 normal letters=485 # # a=21 b=4 A=21 B=4 e=114 d=77 x=113 y=49 z=113 D=1e+06 E=2.92797e+07 # R=01 u=0 s=2 S=0 M=0 T=0 m=2 l=1 n=2 k=1 w=1000 t=4.88281 j=3 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=16571 # lambda=0.201859 K=0.288737 # # A C G T M S K W R Y B D H V # A 6 -8 -8 -8 3 -8 -8 3 3 -8 -8 1 1 1 # C -8 6 -8 -8 3 3 -8 -8 -8 3 1 -8 1 1 # G -8 -8 6 -8 -8 3 3 -8 3 -8 1 1 -8 1 # T -8 -8 -8 6 -8 -8 3 3 -8 3 1 1 1 -8 # M 3 3 -8 -8 3 0 -8 0 0 0 -2 -2 1 1 # S -8 3 3 -8 0 3 0 -8 0 0 1 -2 -2 1 # K -8 -8 3 3 -8 0 3 0 0 0 1 1 -2 -2 # W 3 -8 -8 3 0 -8 0 3 0 0 -2 1 1 -2 # R 3 -8 3 -8 0 0 0 0 3 -8 -2 1 -2 1 # Y -8 3 -8 3 0 0 0 0 -8 3 1 -2 1 -2 # B -8 1 1 1 -2 1 1 -2 -2 1 1 0 0 0 # D 1 -8 1 1 -2 -2 1 1 1 -2 0 1 0 0 # H 1 1 -8 1 1 -2 -2 1 -2 1 0 0 1 0 # V 1 1 1 -8 1 1 -2 -2 1 -2 0 0 0 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # score name1 start1 alnSize1 strand1 seqSize1 name2 start2 alnSize2 strand2 seqSize2 blocks 5672 chrM 5764 2482 + 16571 chrM 6510 2477 + 16775 78,0:2,35,0:3,17,8:0,445,1:0,8,2:0,1082,3:0,54,0:4,18,0:1,52,0:1,19,0:1,150,2:0,4,1:0,503 EG2=0 E=0 2564 chrM 14769 1111 + 16571 chrM 14917 1111 + 16775 446,1:0,7,0:1,657 EG2=4.8e-208 E=2.5e-217 2355 chrM 8918 1381 + 16571 chrM 9633 1385 + 16775 152,1:0,10,0:2,17,2:0,9,0:1,917,0:3,18,2:0,19,2:0,12,8:0,8,0:1,16,0:9,11,0:3,177 EG2=1e-189 E=5.2e-199 2096 chrM 12461 1220 + 16571 chrM 13197 1217 + 16775 81,0:7,20,1:0,9,6:0,329,0:1,8,1:0,55,3:0,156,1:0,12,4:0,14,1:0,6,0:6,513 EG2=5.2e-167 E=2.7e-176 2017 chrM 10944 1395 + 16571 chrM 11669 1403 + 16775 386,4:0,4,0:1,8,0:3,604,0:1,3,0:1,4,2:0,69,0:2,13,2:0,72,1:0,21,0:1,73,0:8,129 EG2=4.3e-160 E=2.3e-169 1474 chrM 3334 689 + 16571 chrM 4097 689 + 16775 689 EG2=1.7e-112 E=9.2e-122 1109 chrM 1042 597 + 16571 chrM 1702 608 + 16775 110,1:0,3,0:3,95,0:4,30,0:1,27,1:0,2,0:2,44,1:0,31,1:0,62,0:6,52,0:2,3,0:3,23,4:0,7,0:2,2,5:0,53,1:0,15,0:1,4,0:1,20 EG2=1.7e-80 E=9.3e-90 969 chrM 4087 991 + 16571 chrM 4850 998 + 16775 167,3:0,13,0:1,15,0:2,20,1:0,11,0:2,4,0:8,66,3:0,69,0:1,30,3:0,11,0:3,167,0:3,9,1:0,7,2:0,41,0:1,18,1:0,329 EG2=3.3e-68 E=1.7e-77 955 chrM 2897 245 + 16571 chrM 3617 246 + 16775 9,0:1,148,0:1,53,1:0,34 EG2=5.5e-67 E=3e-76 694 chrM 2171 572 + 16571 chrM 2890 560 + 16775 27,0:1,17,7:0,22,1:0,15,1:0,24,2:0,37,0:1,11,0:1,11,5:0,11,9:0,8,0:2,17,0:1,13,0:3,41,2:0,38,0:1,32,0:2,37,0:3,184 EG2=4.2e-44 E=2.3e-53 644 chrM 1742 311 + 16571 chrM 2432 326 + 16775 18,1:0,2,0:2,17,0:4,25,0:4,11,0:2,57,1:0,42,0:1,24,0:3,83,0:4,6,3:0,21 EG2=1e-39 E=5.5e-49 627 chrM 656 291 + 16571 chrM 1303 296 + 16775 78,0:3,35,0:2,6,2:0,20,0:1,19,0:1,55,1:0,57,0:1,18 EG2=3.1e-38 E=1.7e-47 587 chrM 5208 516 + 16571 chrM 5978 522 + 16775 74,0:2,17,2:0,88,0:3,19,3:0,5,5:0,14,0:5,6,3:0,21,0:3,14,1:0,12,2:0,29,0:1,6,0:4,30,0:2,9,0:1,13,1:0,73,0:1,2,0:1,67 EG2=1e-34 E=5.5e-44 210 chrM 10518 77 + 16571 chrM 11243 77 + 16775 77 EG2=0.11 E=6.2e-11 137 chrM 3237 70 + 16571 chrM 3973 69 + 16775 37,1:0,32 EG2=2.8e+05 E=0.00016 130 chrM 2807 38 + 16571 chrM 3520 38 + 16775 38 EG2=1.2e+06 E=0.00064 140 chrM 3279 28 + 16571 chrM 10177 28 - 16775 28 EG2=1.5e+05 E=8.5e-05 # Query sequences=2 normal letters=17803 # # a=15 b=3 A=15 B=3 e=79 d=40 x=78 y=46 z=78 D=1e+06 E=1.42772e+10 # R=01 u=0 s=2 S=0 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.5512 j=7 Q=0 # /tmp/last-test # Reference sequences=1 normal letters=70 # lambda=0.203841 K=0.140698 # # A C G T M S K W R Y B D H V # A 5 -5 -5 -5 2 -5 -5 2 2 -5 -5 1 1 1 # C -5 5 -5 -5 2 2 -5 -5 -5 2 1 -5 1 1 # G -5 -5 5 -5 -5 2 2 -5 2 -5 1 1 -5 1 # T -5 -5 -5 5 -5 -5 2 2 -5 2 1 1 1 -5 # M 2 2 -5 -5 2 0 -5 0 0 0 -1 -1 1 1 # S -5 2 2 -5 0 2 0 -5 0 0 1 -1 -1 1 # K -5 -5 2 2 -5 0 2 0 0 0 1 1 -1 -1 # W 2 -5 -5 2 0 -5 0 2 0 0 -1 1 1 -1 # R 2 -5 2 -5 0 0 0 0 2 -5 -1 1 -1 1 # Y -5 2 -5 2 0 0 0 0 -5 2 1 -1 1 -1 # B -5 1 1 1 -1 1 1 -1 -1 1 1 0 0 0 # D 1 -5 1 1 -1 -1 1 1 1 -1 0 1 0 0 # H 1 1 -5 1 1 -1 -1 1 -1 1 0 0 1 0 # V 1 1 1 -5 1 1 -1 -1 1 -1 0 0 0 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # a score=92 EG2=1e+09 E=8e-07 fullScore=102 s NW_017707804.1 0 70 + 70 AACACCACAATGAGATACCACCTCACAGCAGTCAGAATGGCTACAATTAACAAGTCAGGAAAGGACAGAT s 57:130722274 0 54 + 54 AAAACCACAATGAGA---------------GTCAGAGTGGTGATTATTAA-AAGTCGAGAAATGATAGAT p $&'~~~~~~~~~~~~(.0233.,,,,,+--&)*+,,,-.-+++++---)'%(+253--/111/0/,,+(% c 20.6 0.00414 1.97 1.05 1.13 4.98 0.158 2.83 0.966 0.0011 9.56 0.997 0.0153 0.0037 1.07 6.54 51.8 16.4 0.361 3 0.27 # Query sequences=1 normal letters=54 # # a=31 b=1 A=37 B=2 e=58 d=58 x=57 y=42 z=57 D=10 E=3.95616e+11 # R=01 u=0 s=2 S=1 M=0 T=0 m=10 l=1 n=10 k=1 w=1000 t=4.16075 j=3 Q=1 # /tmp/last-test # Reference sequences=1 normal letters=100000 # lambda=0.240522 K=0.452697 # # A C G T M S K W R Y B D H V # A 6 -23 -15 -22 3 -17 -18 3 3 -22 -19 1 1 1 # C -24 6 -23 -17 3 3 -19 -19 -23 3 1 -20 1 1 # G -15 -23 6 -22 -17 3 3 -18 3 -22 1 1 -19 1 # T -22 -17 -22 5 -19 -19 3 3 -22 3 1 1 1 -20 # M 3 3 -17 -19 3 0 -18 0 0 0 -2 -2 1 1 # S -17 3 3 -19 0 3 0 -18 0 0 1 -2 -2 1 # K -18 -19 3 3 -18 0 3 0 0 0 1 1 -1 -2 # W 3 -19 -18 3 0 -18 0 3 0 0 -1 1 1 -2 # R 3 -23 3 -22 0 0 0 0 3 -22 -2 1 -2 1 # Y -23 3 -22 3 0 0 0 0 -23 3 1 -1 1 -2 # B -19 1 1 1 -2 1 1 -1 -2 1 1 0 0 -1 # D 1 -20 1 1 -2 -2 1 1 1 -1 0 1 0 -1 # H 1 1 -19 1 1 -2 -1 1 -2 1 0 0 1 -1 # V 1 1 1 -20 1 1 -2 -2 1 -2 -1 -1 -1 1 # # Coordinates are 0-based. For - strand matches, coordinates # in the reverse complement of the 2nd sequence are used. # # name start alnSize strand seqSize alignment # # m=1 s=77 d=2 c=0.004 t=1e-05 M=7 S=1.7 # trans=-99 # cismax=194886 # GT=11 GC=-5 AT=-11 NN=-14 # AG=11 AC=-11 NN=-14 # a score=252 mismap=1e-10 sense=-15 acc=AG s XSR 87799 43 + 100000 gGAGGTTAGGTAGGTGTGGAAACAAGTGAGGCCGACCACAGAC s ERR4570987.9 0 43 + 151 GGAGGTTAGGTAGGTGTGGAAACAAGTGAGGCCGACCACAGAC q ERR4570987.9 A?AAB3FFFFFFCFGGF?2DDG44FGHB5GAFEA2AEEDDCF2 a score=575 mismap=1e-10 sense=-15 don=GT s XSR 88741 108 + 100000 CAAATTGAAAAGAAGCTAACGAATATTTCAAATGCGGAAGGCCAGGATTCTTGAAGCGCGGCGAGTATTTCTCCTTCGTACTTGtcctTCGAGAGAATCATCAAGTTC s ERR4570987.9 43 108 + 151 CAAATTGAAAAGAAGCTAACGAATATTTCAAATGCGGAAGGCCAGGATTCTTGACGCGCGGCGAGTATTTCTCCTTCGTACTTGTCCTTTGAGAGAATCATCAAGTTC q ERR4570987.9 ABA1BF55FBHFFHHHB5DGGE1B?BF5GGFHD55E??E>EAF1FAFGHHHHFF3EC@EE?CGGG/01GHHHE1FHBGFBD1A1AFABGCE a score=758 mismap=1e-10 sense=-16 don=GT s XSR 70475 132 + 100000 TGTAAGTACTGATGTCGATTTCCTCGGGGAGCTCGGTGATCTTGACTTCGAATCGGTCCTGGACGGACTGGGAGGTCTTGGCGTCTTCCTCGTCGGAAACGAAGGAGATGGCAAGACCCTTGGTGCCGAATC s ERR4570987.920 19 132 + 151 TGTAAGTACTGATGTCGATTTCCTCGGGGAGCTCGGTGATCTTGACTTCGAATCGGTCCTGGACGGACTGGGAGGTCTTGGCGTCTTCCTCGTCGGAAACGAAGGAGATGGCAAGACCCTTGGTGCCGAATC q ERR4570987.920 33FFHF3DGG3FDBGHCF0FEFFFHE0A?E?FF1AA/A/FDGFHEFBAGEHFGEHCECGFFEHAEE/>>>CEA//?FGBGGBEEGFEBGFBEHGGCGGGGA/?A/0/?CD1FHF/0F0DDD03AGFGGFGCEG?000AF1FGFHHHHHHHHGHFAGFE/AFF2 a score=475 mismap=1e-10 sense=-16 don=GT s XSR 51518 82 + 100000 CAGAAATCGACGATGTCTTTGAACAAATACACGACTTCGGGAAAGGAAGAAGACAGCCGCGCTAGTTTCAAAATCGCCTTTG s ERR4570987.1142 52 82 + 136 CAGAAATCGACGATGTCTTTGAACAAATACACGACTTCGGGAAAGGAAGAAGACAGCCGCGCTAGTTTCAAAATCGCCTTTG q ERR4570987.1142 GFGHHHFFECE?/F/FEFHHF2GCB>A111FFFGEGGHFA/EEC00FFF0CGHHGFHEGGGCGGGFFGHF1<