<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE TS>
<TS version="2.1" language="en_US">
<context>
    <name>CustomAutoAnnotationDialog</name>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="14"/>
        <source>Plasmid Auto Annotations</source>
        <translation>Plasmid Auto Annotations</translation>
    </message>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="20"/>
        <source>Selected features</source>
        <translation>Selected features</translation>
    </message>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="26"/>
        <source>Promoter</source>
        <translation>Promoter</translation>
    </message>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="33"/>
        <source>Origin</source>
        <translation>Origin</translation>
    </message>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="40"/>
        <source>Terminator</source>
        <translation>Terminator</translation>
    </message>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="47"/>
        <source>Primer</source>
        <translation>Primer</translation>
    </message>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="54"/>
        <source>Gene</source>
        <translation>Gene</translation>
    </message>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="61"/>
        <source>Other features</source>
        <translation>Other features</translation>
    </message>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.ui" line="68"/>
        <source>Regulatory</source>
        <translation>Regulatory</translation>
    </message>
</context>
<context>
    <name>FindAnnotationCollocationsDialog</name>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="58"/>
        <source>1</source>
        <translation>1</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="63"/>
        <source>2</source>
        <translation>2</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="96"/>
        <source>Region size:</source>
        <translation>Region size:</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="20"/>
        <source>Find Groups of Annotated Regions</source>
        <translation>Find Groups of Annotated Regions</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="158"/>
        <source>Save regions as annotations</source>
        <translation>Save regions as annotations</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="165"/>
        <source>Clear results</source>
        <translation>Clear results</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="176"/>
        <source>Result strand</source>
        <translation>Result strand</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="182"/>
        <source>Direct</source>
        <translation>Direct</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="189"/>
        <source>Complement</source>
        <translation>Complement</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="196"/>
        <source>Both</source>
        <translation>Both</translation>
    </message>
    <message>
        <location filename="../src/FindAnnotationCollocationsDialog.ui" line="219"/>
        <source>Annotation must fit into region</source>
        <translation>Annotation must fit into region</translation>
    </message>
</context>
<context>
    <name>U2::AnnotatorPlugin</name>
    <message>
        <location filename="../src/AnnotatorPlugin.cpp" line="56"/>
        <source>DNA Annotator</source>
        <translation>DNA Annotator</translation>
    </message>
    <message>
        <location filename="../src/AnnotatorPlugin.cpp" line="56"/>
        <source>This plugin contains routines to manipulate and search DNA sequence annotations</source>
        <translation>This plugin contains routines to manipulate and search DNA sequence annotations</translation>
    </message>
</context>
<context>
    <name>U2::AnnotatorViewContext</name>
    <message>
        <location filename="../src/AnnotatorPlugin.cpp" line="97"/>
        <source>Find annotated regions...</source>
        <translation>Find annotated regions...</translation>
    </message>
    <message>
        <location filename="../src/AnnotatorPlugin.cpp" line="101"/>
        <source>Annotate plasmid...</source>
        <translation>Annotate plasmid...</translation>
    </message>
    <message>
        <location filename="../src/AnnotatorPlugin.cpp" line="121"/>
        <source>Warning</source>
        <translation>Warning</translation>
    </message>
    <message>
        <location filename="../src/AnnotatorPlugin.cpp" line="121"/>
        <source>No annotations found</source>
        <translation>No annotations found</translation>
    </message>
</context>
<context>
    <name>U2::CollocationSearchTask</name>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="327"/>
        <location filename="../src/CollocationsDialogController.cpp" line="357"/>
        <source>Search for annotated regions</source>
        <translation>Search for annotated regions</translation>
    </message>
</context>
<context>
    <name>U2::CollocationsDialogController</name>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="61"/>
        <source>Search</source>
        <translation>Search</translation>
    </message>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="62"/>
        <location filename="../src/CollocationsDialogController.cpp" line="104"/>
        <source>Cancel</source>
        <translation>Cancel</translation>
    </message>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="65"/>
        <source>&lt;&lt;click &apos;+&apos; button to add new annotation&gt;&gt;</source>
        <translation>&lt;&lt;click &apos;+&apos; button to add new annotation&gt;&gt;</translation>
    </message>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="104"/>
        <source>Stop</source>
        <translation>Stop</translation>
    </message>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="110"/>
        <source>Searching... found %1 regions. Progress: %2%</source>
        <translation>Searching... found %1 regions. Progress: %2%</translation>
    </message>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="112"/>
        <source>Found %1 regions</source>
        <translation>Found %1 regions</translation>
    </message>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="114"/>
        <source>Ready</source>
        <translation>Ready</translation>
    </message>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="114"/>
        <source>Select annotation names to search</source>
        <translation>Select annotation names to search</translation>
    </message>
    <message>
        <location filename="../src/CollocationsDialogController.cpp" line="133"/>
        <source>No annotations left</source>
        <translation>No annotations left</translation>
    </message>
</context>
<context>
    <name>U2::CustomAutoAnnotationDialog</name>
    <message>
        <location filename="../src/CustomAutoAnnotationDialog.cpp" line="42"/>
        <source>Annotate</source>
        <translation>Annotate</translation>
    </message>
</context>
<context>
    <name>U2::CustomPatternAnnotationTask</name>
    <message>
        <location filename="../src/CustomPatternAnnotationTask.cpp" line="52"/>
        <source>Custom pattern annotation</source>
        <translation>Custom pattern annotation</translation>
    </message>
</context>
<context>
    <name>U2::CustomPatternAutoAnnotationUpdater</name>
    <message>
        <location filename="../src/CustomPatternAnnotationTask.cpp" line="211"/>
        <source>Plasmid features</source>
        <translation>Plasmid features</translation>
    </message>
</context>
<context>
    <name>U2::GeneByGeneReportTask</name>
    <message>
        <location filename="../src/GeneByGeneReportTask.cpp" line="293"/>
        <source>Generating gene-by-gene approach report</source>
        <translation>Generating gene-by-gene approach report</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::CollocationPrompter</name>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="157"/>
        <source> sequence from &lt;u&gt;%1&lt;/u&gt;</source>
        <translation> sequence from &lt;u&gt;%1&lt;/u&gt;</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="160"/>
        <source> set of annotations from &lt;u&gt;%1&lt;/u&gt;</source>
        <translation> set of annotations from &lt;u&gt;%1&lt;/u&gt;</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="167"/>
        <source>For each %1 and %2,</source>
        <translation>For each %1 and %2,</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="169"/>
        <source>For each %1%2,</source>
        <translation>For each %1%2,</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="185"/>
        <source> Annotations themselves may not span beyond the region.</source>
        <translation>Annotations themselves may not span beyond the region.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="189"/>
        <source>%1 look if &lt;u&gt;%2&lt;/u&gt; annotations appear collocated within same region of length &lt;u&gt;%3&lt;/u&gt;.%4&lt;br&gt;Output the list of found regions annotated as &lt;u&gt;%5&lt;/u&gt;.</source>
        <translation>%1 look if &lt;u&gt;%2&lt;/u&gt; annotations appear collocated within same region of length &lt;u&gt;%3&lt;/u&gt;.%4&lt;br&gt;Output the list of found regions annotated as &lt;u&gt;%5&lt;/u&gt;.</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::CollocationWorker</name>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="99"/>
        <source>Group annotations</source>
        <translation>Group annotations</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="140"/>
        <source>Create new annotations</source>
        <translation>Create new annotations</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="103"/>
        <source>Result annotation</source>
        <translation>Result annotation</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="104"/>
        <source>Name of the result annotations to mark found collocations.</source>
        <translation>Name of the result annotations to mark found collocations.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="105"/>
        <source>Group of annotations</source>
        <translation>Group of annotations</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="107"/>
        <source>Region size</source>
        <translation>Region size</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="108"/>
        <source>Effectively this is the maximum allowed distance between the interesting annotations in a group.</source>
        <translation>Effectively this is the maximum allowed distance between the interesting annotations in a group.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="109"/>
        <source>Must fit into region</source>
        <translation>Must fit into region</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="110"/>
        <source>Whether the interesting annotations should entirely fit into the specified region to form a group.</source>
        <translation>Whether the interesting annotations should entirely fit into the specified region to form a group.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="111"/>
        <source>Result type</source>
        <translation>Result type</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="112"/>
        <source>Copy original annotations or annotate found regions with new ones.</source>
        <translation>Copy original annotations or annotate found regions with new ones.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="113"/>
        <source>Include boundaries</source>
        <translation>Include boundaries</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="114"/>
        <source>Include most left and most right boundary annotations regions into result or exclude them.</source>
        <translation>Include most left and most right boundary annotations regions into result or exclude them.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="129"/>
        <source>Collocation Search</source>
        <translation>Collocation Search</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="139"/>
        <source>Copy original annotations</source>
        <translation>Copy original annotations</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="74"/>
        <source>At least 2 annotations are required for collocation search.</source>
        <translation>At least 2 annotations are required for collocation search.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="99"/>
        <source>Annotated regions containing found collocations.</source>
        <translation>Annotated regions containing found collocations.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="106"/>
        <source>A list of annotation names to search. Found regions will contain all the named annotations.</source>
        <translation>A list of annotation names to search. Found regions will contain all the named annotations.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="130"/>
        <source>Finds groups of specified annotations in each supplied set of annotations, stores found regions as annotations.</source>
        <translation>Finds groups of specified annotations in each supplied set of annotations, stores found regions as annotations.</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="94"/>
        <source>Input data</source>
        <translation>Input data</translation>
    </message>
    <message>
        <location filename="../src/CollocationWorker.cpp" line="95"/>
        <source>An input sequence and a set of annotations to search in.</source>
        <translation>An input sequence and a set of annotations to search in.</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::GeneByGeneReportPrompter</name>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="232"/>
        <source>unset</source>
        <translation>unset</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="240"/>
        <source>For annotated genes from &lt;u&gt;%1&lt;/u&gt; build gene-by-gene approach report.</source>
        <translation>For annotated genes from &lt;u&gt;%1&lt;/u&gt; build gene-by-gene approach report.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="241"/>
        <source> With sequence identity of &lt;u&gt;%1&lt;/u&gt;.</source>
        <translation> With sequence identity of &lt;u&gt;%1&lt;/u&gt;.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="242"/>
        <source> Using &lt;u&gt;%1&lt;/u&gt; to compare gene and genome sequences.</source>
        <translation> Using &lt;u&gt;%1&lt;/u&gt; to compare gene and genome sequences.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="243"/>
        <source> Output result table to &lt;u&gt;%1&lt;/u&gt;.</source>
        <translation> Output result table to &lt;u&gt;%1&lt;/u&gt;.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="244"/>
        <source> If a report file already exists, &lt;u&gt;%1&lt;/u&gt; it</source>
        <translation> If a report file already exists, &lt;u&gt;%1&lt;/u&gt; it</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::GeneByGeneReportWorker</name>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="153"/>
        <source>Input annotations</source>
        <translation>Input annotations</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="154"/>
        <source>Gene annotations.</source>
        <translation>Gene annotations.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="157"/>
        <source>Input sequences</source>
        <translation>Input sequences</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="158"/>
        <source>Gene sequences.</source>
        <translation>Gene sequences.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="162"/>
        <source>Gene by gene report data.</source>
        <translation>Gene by gene report data.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="163"/>
        <source>Gene with similar regions to for report.</source>
        <translation>Gene with similar regions to for report.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="171"/>
        <source>Output file</source>
        <translation>Output file</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="172"/>
        <source>File to store a report.</source>
        <translation>File to store a report.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="174"/>
        <source>Annotation name</source>
        <translation>Annotation name</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="175"/>
        <source>Annotation name used to compare genes and reference genomes.</source>
        <translation>Annotation name used to compare genes and reference genomes.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="177"/>
        <source>Existing file</source>
        <translation>Existing file</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="178"/>
        <source>If a target report already exists you should specify how to handle that. &lt;b&gt;Merge&lt;/b&gt; two table in one. &lt;b&gt;Overwrite&lt;/b&gt; or &lt;b&gt;Rename&lt;/b&gt; existing file.</source>
        <translation>If a target report already exists you should specify how to handle that. &lt;b&gt;Merge&lt;/b&gt; two table in one. &lt;b&gt;Overwrite&lt;/b&gt; or &lt;b&gt;Rename&lt;/b&gt; existing file.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="181"/>
        <source>Identity cutoff</source>
        <translation>Identity cutoff</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="182"/>
        <source>Identity between gene sequence length and annotation length in per cent. BLAST identity (if specified) is checked after.</source>
        <translation>Identity between gene sequence length and annotation length in per cent. BLAST identity (if specified) is checked after.</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="213"/>
        <source>Gene-by-gene Approach Report</source>
        <translation>Gene-by-gene Approach Report</translation>
    </message>
    <message>
        <location filename="../src/GeneByGeneReportWorker.cpp" line="214"/>
        <source>Output a table of genes found in a reference sequence.</source>
        <translation>Output a table of genes found in a reference sequence.</translation>
    </message>
</context>
</TS>
