/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2017 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#ifndef _U2_CLONE_ASSEMBLY_WITH_REFERENCE_TO_DBI_TASK_H_
#define _U2_CLONE_ASSEMBLY_WITH_REFERENCE_TO_DBI_TASK_H_

#include <U2Core/Task.h>
#include <U2Core/U2Type.h>
#include <U2Core/U2Assembly.h>

namespace U2 {

class CloneObjectTask;

class CloneAssemblyWithReferenceToDbiTask : public Task {
    Q_OBJECT
public:
    CloneAssemblyWithReferenceToDbiTask(const U2Assembly &assembly,
                                        const U2Sequence &reference,
                                        const U2DbiRef &srcDbiRef,
                                        const U2DbiRef &dstDbiRef,
                                        const QVariantMap &hints);

    void prepare();
    void run();

private:
    U2Assembly assembly;
    U2Sequence reference;

    const U2DbiRef srcDbiRef;
    const U2DbiRef dstDbiRef;
    const QString dstFolder;

    CloneObjectTask *cloneAssemblyTask;
    CloneObjectTask *cloneReferenceTask;
};

}   // namespace U2

#endif // _U2_CLONE_ASSEMBLY_WITH_REFERENCE_TO_DBI_TASK_H_
