/**
* UGENE - Integrated Bioinformatics Tools.
* Copyright (C) 2008-2017 UniPro <ugene@unipro.ru>
* http://ugene.net
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
* MA 02110-1301, USA.
*/

#ifndef _U2_APR_FORMAT_H_
#define _U2_APR_FORMAT_H_

#include <U2Core/BaseDocumentFormats.h>
#include <U2Core/DocumentModel.h>

#include <QTextStream>
#include <QStack>

namespace U2 {

class IOAdapter;
class MultipleSequenceAlignment;

class U2FORMATS_EXPORT AprFormat : public DocumentFormat {
    Q_OBJECT
public:
    AprFormat(QObject* p);

    virtual DocumentFormatId getFormatId() const { return BaseDocumentFormats::VECTOR_NTI_ALIGNX; }
    virtual const QString& getFormatName() const { return formatName; }
    virtual FormatCheckResult checkRawData(const QByteArray& rawData, const GUrl& url = GUrl()) const;
    virtual QString getRadioButtonText() const;

protected:
    virtual Document* loadDocument(IOAdapter* io, const U2DbiRef& dbiRef, const QVariantMap& fs, U2OpStatus& os);

private:
    void load(IOAdapter* io, const U2DbiRef& dbiRef, QList<GObject*>& objects, const QVariantMap &hints, U2OpStatus& ti);

    QString formatName;
};

} //namespace

#endif
