<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE TS>
<TS version="2.1" language="en_US">
<context>
    <name>QObject</name>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="69"/>
        <source>Sitecon model</source>
        <translation>Sitecon model</translation>
    </message>
</context>
<context>
    <name>SiteconBuildDialog</name>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="22"/>
        <source>Input alignment (nucleic)</source>
        <translation>Input alignment (nucleic)</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="32"/>
        <location filename="../src/SiteconBuildDialog.ui" line="49"/>
        <source>...</source>
        <translation>...</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="39"/>
        <source>Output model</source>
        <translation>Output model</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="58"/>
        <source>Options</source>
        <translation>Options</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="64"/>
        <location filename="../src/SiteconBuildDialog.ui" line="95"/>
        <source>Window is used to pick out the most important alignment region and is located at the center of the alignment.
           Must be: windows size is not greater than TFBS alignment length,
           recommended: windows size is not greater than 50 bp.</source>
        <translation>Window is used to pick out the most important alignment region and is located at the center of the alignment.
           Must be: windows size is not greater than TFBS alignment length,
           recommended: windows size is not greater than 50 bp.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="69"/>
        <source>Window size</source>
        <translation>Window size</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="103"/>
        <source>bp</source>
        <translation>bp</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="122"/>
        <source>Calibration random seed</source>
        <translation>Calibration random seed</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="173"/>
        <source>Calibration sequence length</source>
        <translation>Calibration sequence length</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="206"/>
        <source>       100 Kb</source>
        <translation>       100 Kb</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="211"/>
        <source>       500 Kb</source>
        <translation>       500 Kb</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="216"/>
        <source>         1 Mb</source>
        <translation>         1 Mb</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="221"/>
        <source>         5 Mb</source>
        <translation>         5 Mb</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="232"/>
        <source>Weight algorithm</source>
        <translation>Weight algorithm</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="290"/>
        <source>Default status</source>
        <translation>Default status</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="259"/>
        <source>       None</source>
        <translation>       None</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="264"/>
        <source>  Algorithm N2</source>
        <translation>  Algorithm N2</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="170"/>
        <location filename="../src/SiteconBuildDialog.ui" line="193"/>
        <source>Length of random synthetic sequences used to calibrate the profile. Should not be less than window size.</source>
        <translation>Length of random synthetic sequences used to calibrate the profile. Should not be less than window size.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="14"/>
        <source>SITECON Build</source>
        <translation>SITECON Build</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="119"/>
        <location filename="../src/SiteconBuildDialog.ui" line="148"/>
        <source>The random seed, where &lt;n&gt; is a positive integer. You can use this option to generate reproducible results for different runs on the same data.</source>
        <translation>The random seed, where &lt;n&gt; is a positive integer. You can use this option to generate reproducible results for different runs on the same data.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialog.ui" line="229"/>
        <location filename="../src/SiteconBuildDialog.ui" line="252"/>
        <source>Optional feature, in most cases applying no weight will fit. In some cases choosing algorithm 2 will increase the recognition quality.</source>
        <translation>Optional feature, in most cases applying no weight will fit. In some cases choosing algorithm 2 will increase the recognition quality.</translation>
    </message>
</context>
<context>
    <name>SiteconSearchDialog</name>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="14"/>
        <source>SITECON Search</source>
        <translation>SITECON Search</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="22"/>
        <source>File with model</source>
        <translation>File with model</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="36"/>
        <source>...</source>
        <translation>...</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="46"/>
        <source>Threshold</source>
        <translation>Threshold</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="190"/>
        <source>Strands</source>
        <translation>Strands</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="196"/>
        <source>Both strands</source>
        <translation>Both strands</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="215"/>
        <source>Search in direct strand only</source>
        <translation>Search in direct strand only</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="218"/>
        <source>Direct strand</source>
        <translation>Direct strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="240"/>
        <source>Search in complement strand</source>
        <translation>Search in complement strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="243"/>
        <source>Complement strand</source>
        <translation>Complement strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="106"/>
        <source>Range</source>
        <translation>Range</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="111"/>
        <source>Strand</source>
        <translation>Strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="116"/>
        <source>PSUM</source>
        <translation>PSUM</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="121"/>
        <source>First type error</source>
        <translation>First type error</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="126"/>
        <source>Second type error</source>
        <translation>Second type error</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="70"/>
        <source>Clear results</source>
        <translation>Clear results</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="77"/>
        <source>Save as annotations</source>
        <translation>Save as annotations</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="136"/>
        <source>Ready</source>
        <translation>Ready</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialog.ui" line="43"/>
        <location filename="../src/SiteconSearchDialog.ui" line="59"/>
        <source>Recognition quality threshold, should be less than 100%. Choosing too low threshold will lead to recognition of too many TFBS recognised with too low trustworthiness. Choosing too high threshold may result in no TFBS recognised.</source>
        <translation>Recognition quality threshold, should be less than 100%. Choosing too low threshold will lead to recognition of too many TFBS recognised with too low trustworthiness. Choosing too high threshold may result in no TFBS recognised.</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="165"/>
        <source>Recognition quality percentage threshold. If you need to switch off this filter choose &lt;b&gt;the lowest&lt;/b&gt; value&lt;/i&gt;&lt;/p&gt;.</source>
        <translation>Recognition quality percentage threshold. If you need to switch off this filter choose &lt;b&gt;the lowest&lt;/b&gt; value&lt;/i&gt;&lt;/p&gt;.</translation>
    </message>
</context>
<context>
    <name>U2::GTest_CompareSiteconModels</name>
    <message>
        <location filename="../src/SiteconAlgorithmTests.cpp" line="588"/>
        <source>Models not equal</source>
        <translation>Models not equal</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::SiteconBuildPrompter</name>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="119"/>
        <source>For each MSA from &lt;u&gt;%1&lt;/u&gt;, build SITECON model.</source>
        <translation>For each MSA from &lt;u&gt;%1&lt;/u&gt;, build SITECON model.</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::SiteconBuildWorker</name>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="83"/>
        <source>Build SITECON model</source>
        <translation>Build SITECON model</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="106"/>
        <source>None</source>
        <translation type="unfinished"></translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="107"/>
        <source>Algorithm2</source>
        <translation type="unfinished"></translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="137"/>
        <source>Random seed can not be less zero</source>
        <translation>Random seed can not be less zero</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="141"/>
        <source>Calibration length can not be less zero</source>
        <translation>Calibration length can not be less zero</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="146"/>
        <source>Window size can not be less zero</source>
        <translation>Window size can not be less zero</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="177"/>
        <source>Built SITECON model from: %1</source>
        <translation>Built SITECON model from: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="59"/>
        <source>Input alignment</source>
        <translation>Input alignment</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="65"/>
        <source>Sitecon model</source>
        <translation>Sitecon model</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="60"/>
        <source>Origin</source>
        <translation>Origin</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="72"/>
        <source>Window size, bp</source>
        <translation>Window size</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="72"/>
        <source>Window size.</source>
        <translation>Window size.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="73"/>
        <source>Calibration length</source>
        <translation>Calibration length</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="73"/>
        <source>Calibration length.</source>
        <translation>Calibration length.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="74"/>
        <source>Random seed</source>
        <translation>Random seed</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="74"/>
        <source>Random seed.</source>
        <translation>Random seed.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="75"/>
        <source>Weight algorithm</source>
        <translation>Weight algorithm</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="59"/>
        <source>Input multiple sequence alignment for building statistical model.</source>
        <translation>Input multiple sequence alignment for building statistical model.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="60"/>
        <source>Location of input alignment, used as optional hint for model description.</source>
        <translation>Location of input alignment, used as optional hint for model description.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="65"/>
        <source>Produced statistical model of specified TFBS data.</source>
        <translation>Produced statistical model of specified TFBS data.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="75"/>
        <source>Weight algorithm.</source>
        <translation>Weight algorithm.</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildWorker.cpp" line="84"/>
        <source>Builds statistical profile for SITECON. The SITECON is a program for probabilistic recognition of transcription factor binding sites.</source>
        <translation>Builds statistical profile for SITECON. The SITECON is a program for probabilistic recognition of transcription factor binding sites.</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::SiteconReadPrompter</name>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="189"/>
        <source>Read model(s) from &lt;u&gt;%1&lt;/u&gt;.</source>
        <translation>Read model(s) from &lt;u&gt;%1&lt;/u&gt;.</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::SiteconReader</name>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="231"/>
        <source>Loaded SITECON model from %1</source>
        <translation>Loaded SITECON model from %1</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::SiteconSearchPrompter</name>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="150"/>
        <source>unset</source>
        <translation>unset</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="151"/>
        <source>For each sequence from &lt;u&gt;%1&lt;/u&gt;,</source>
        <translation>For each sequence from &lt;u&gt;%1&lt;/u&gt;,</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="165"/>
        <source>%1 search transcription factor binding sites (TFBS) %2.&lt;br&gt;Recognize sites with &lt;u&gt;similarity %3%&lt;/u&gt;, process &lt;u&gt;%4&lt;/u&gt;.&lt;br&gt;Output the list of found regions annotated as &lt;u&gt;%5&lt;/u&gt;.</source>
        <translation>%1 search transcription factor binding sites (TFBS) %2.&lt;br&gt;Recognize sites with &lt;u&gt;similarity %3%&lt;/u&gt;, process &lt;u&gt;%4&lt;/u&gt;.&lt;br&gt;Output the list of found regions annotated as &lt;u&gt;%5&lt;/u&gt;.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="152"/>
        <source>with all profiles provided by &lt;u&gt;%1&lt;/u&gt;,</source>
        <translation>with all profiles provided by &lt;u&gt;%1&lt;/u&gt;,</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::SiteconSearchWorker</name>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="159"/>
        <source>both strands</source>
        <translation>both strands</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="160"/>
        <source>direct strand</source>
        <translation>direct strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="161"/>
        <source>complement strand</source>
        <translation>complement strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="65"/>
        <source>Sitecon Model</source>
        <translation>Sitecon Model</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="66"/>
        <source>Sequence</source>
        <translation>Sequence</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="67"/>
        <source>SITECON annotations</source>
        <translation>SITECON annotations</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="81"/>
        <source>Result annotation</source>
        <translation>Result annotation</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="84"/>
        <source>Recognition quality percentage threshold.&lt;p&gt;&lt;i&gt;If you need to switch off this filter choose &lt;b&gt;the lowest&lt;/b&gt; value&lt;/i&gt;&lt;/p&gt;.</source>
        <translation>Recognition quality percentage threshold.&lt;p&gt;&lt;i&gt;If you need to switch off this filter choose &lt;b&gt;the lowest&lt;/b&gt; value&lt;/i&gt;&lt;/p&gt;.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="87"/>
        <source>Alternative setting for filtering results, minimal value of Error type I.&lt;br&gt;Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.&lt;p&gt;&lt;i&gt;If you need to switch off this filter choose &lt;b&gt;&quot;0&quot;&lt;/b&gt; value&lt;/i&gt;&lt;/p&gt;.</source>
        <translation>Alternative setting for filtering results, minimal value of Error type I.&lt;br&gt;Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.&lt;p&gt;&lt;i&gt;If you need to switch off this filter choose &lt;b&gt;&quot;0&quot;&lt;/b&gt; value&lt;/i&gt;&lt;/p&gt;.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="91"/>
        <source>Alternative setting for filtering results, max value of Error type II.&lt;br&gt;Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.&lt;p&gt;&lt;i&gt;If you need to switch off this filter choose &lt;b&gt;&quot;1&quot;&lt;/b&gt; value&lt;/i&gt;&lt;/p&gt;.</source>
        <translation>Alternative setting for filtering results, max value of Error type II.&lt;br&gt;Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.&lt;p&gt;&lt;i&gt;If you need to switch off this filter choose &lt;b&gt;&quot;1&quot;&lt;/b&gt; value&lt;/i&gt;&lt;/p&gt;.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="101"/>
        <source>Search for TFBS with SITECON</source>
        <translation>Search for TFBS with SITECON</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="204"/>
        <source>Min score can not be less 60% or more 100%</source>
        <translation>Min score can not be less 60% or more 100%</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="207"/>
        <source>Min Err1 can not be less 0 or more 1</source>
        <translation>Min Err1 can not be less 0 or more 1</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="210"/>
        <source>Max Err2 can not be less 0 or more 1</source>
        <translation>Max Err2 can not be less 0 or more 1</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="213"/>
        <source>Search in strand can only be 0(both) or 1(direct) or -1(complement)</source>
        <translation>Search in strand can only be 0(both) or 1(direct) or -1(complement)</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="253"/>
        <source>Find TFBS in %1</source>
        <translation>Find TFBS in %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="257"/>
        <source>Bad sequence supplied to SiteconSearch: %1</source>
        <translation>Bad sequence supplied to SiteconSearch: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="281"/>
        <source>Found %1 TFBS</source>
        <translation>Found %1 TFBS</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="65"/>
        <source>Profile data to search with.</source>
        <translation>Profile data to search with.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="66"/>
        <source>Input nucleotide sequence to search in.</source>
        <translation>Input nucleotide sequence to search in.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="68"/>
        <source>Annotations marking found TFBS sites.</source>
        <translation>Annotations marking found TFBS sites.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="82"/>
        <source>Annotation name for marking found regions.</source>
        <translation>Annotation name for marking found regions.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="102"/>
        <source>Searches each input sequence for transcription factor binding sites significantly similar to specified SITECON profiles. In case several profiles were supplied, searches with all profiles one by one and outputs merged set of annotations for each sequence.</source>
        <translation>Searches each input sequence for transcription factor binding sites significantly similar to specified SITECON profiles. In case several profiles were supplied, searches with all profiles one by one and outputs merged set of annotations for each sequence.</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="83"/>
        <source>Min score</source>
        <translation>Min score</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="86"/>
        <source>Min Err1</source>
        <translation>Min Err1</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchWorker.cpp" line="90"/>
        <source>Max Err2</source>
        <translation>Max Err2</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::SiteconWritePrompter</name>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="198"/>
        <source>Save the profile(s) from &lt;u&gt;%1&lt;/u&gt; to %2.</source>
        <translation>Save the profile(s) from &lt;u&gt;%1&lt;/u&gt; to %2.</translation>
    </message>
</context>
<context>
    <name>U2::LocalWorkflow::SiteconWriter</name>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="256"/>
        <source>Unspecified URL for writing Sitecon</source>
        <translation>Unspecified URL for writing Sitecon</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="272"/>
        <source>Writing SITECON model to %1</source>
        <translation>Writing SITECON model to %1</translation>
    </message>
</context>
<context>
    <name>U2::QDSiteconActor</name>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="65"/>
        <source>%1</source>
        <translation>%1</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="69"/>
        <source>with profile provided by %1 %2&lt;/a&gt;</source>
        <translation>with profile provided by %1 %2&lt;/a&gt;</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="72"/>
        <source>with all %1 %2 profiles&lt;/a&gt;</source>
        <translation>with all %1 %2 profiles&lt;/a&gt;</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="75"/>
        <source>similarity %1%</source>
        <translation>similarity %1%</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="80"/>
        <source>both strands</source>
        <translation>both strands</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="81"/>
        <source>direct strand</source>
        <translation>direct strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="82"/>
        <source>complement strand</source>
        <translation>complement strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="107"/>
        <source>%1: incorrect sitecon model url(s)</source>
        <translation>%1: incorrect sitecon model url(s)</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="111"/>
        <source>%1: min score can not be less 60% or more 100%</source>
        <translation>%1: min score can not be less 60% or more 100%</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="115"/>
        <source>%1: min Err1 can not be less 0 or more 1</source>
        <translation>%1: min Err1 can not be less 0 or more 1</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="119"/>
        <source>%1: max Err2 can not be less 0 or more 1</source>
        <translation>%1: max Err2 can not be less 0 or more 1</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="159"/>
        <source>Sitecon</source>
        <translation>SITECON</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="160"/>
        <source>Searches for transcription factor binding sites significantly similar to specified SITECON profiles. In case several profiles were supplied, searches with all profiles one by one and outputs merged set of annotations.</source>
        <translation>Searches for transcription factor binding sites significantly similar to specified SITECON profiles. In case several profiles were supplied, searches with all profiles one by one and outputs merged set of annotations.</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="85"/>
        <source>Searches transcription factor binding sites (TFBS) %1.&lt;br&gt;Recognize sites with %2, process %3.</source>
        <translation>Searches transcription factor binding sites (TFBS) %1.&lt;br&gt;Recognize sites with %2, process %3.</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="164"/>
        <source>Min score</source>
        <translation>Min score</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="166"/>
        <source>Min Err1</source>
        <translation>Min Err1</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="167"/>
        <source>Alternative setting for filtering results, minimal value of Error type I.&lt;br&gt;Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.</source>
        <translation>Alternative setting for filtering results, minimal value of Error type I.&lt;br&gt;Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="169"/>
        <source>Max Err2</source>
        <translation>Max Err2</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="170"/>
        <source>Alternative setting for filtering results, max value of Error type II.&lt;br&gt;Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.</source>
        <translation>Alternative setting for filtering results, max value of Error type II.&lt;br&gt;Note that all thresholds (by score, by err1 and by err2) are applied when filtering results.</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="172"/>
        <source>Model</source>
        <translation>Model</translation>
    </message>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="172"/>
        <source>Profile data to search with.</source>
        <translation>Profile data to search with.</translation>
    </message>
</context>
<context>
    <name>U2::QDSiteconTask</name>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="204"/>
        <source>Sitecon Query</source>
        <translation>SITECON Query</translation>
    </message>
</context>
<context>
    <name>U2::SiteconADVContext</name>
    <message>
        <location filename="../src/SiteconPlugin.cpp" line="118"/>
        <source>Find TFBS with SITECON...</source>
        <translation>Find TFBS with SITECON...</translation>
    </message>
</context>
<context>
    <name>U2::SiteconBuildDialogController</name>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="59"/>
        <location filename="../src/SiteconBuildDialogController.cpp" line="148"/>
        <source>Build</source>
        <translation>Build</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="60"/>
        <location filename="../src/SiteconBuildDialogController.cpp" line="129"/>
        <source>Cancel</source>
        <translation>Cancel</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="102"/>
        <source>Illegal alignment file</source>
        <translation>Illegal alignment file</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="107"/>
        <source>Illegal SITECON model file</source>
        <translation>Illegal SITECON model file</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="113"/>
        <source>Error</source>
        <translation>Error</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="125"/>
        <source>Starting calibration process</source>
        <translation>Starting calibration process</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="128"/>
        <source>Hide</source>
        <translation>Hide</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="142"/>
        <source>Build finished with error: %1</source>
        <translation>Build finished with error: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="144"/>
        <source>Build canceled</source>
        <translation>Build canceled</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="146"/>
        <source>Build finished successfully</source>
        <translation>Build finished successfully</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="149"/>
        <source>Close</source>
        <translation>Close</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="155"/>
        <source>Running... State :%1 Progress: %2</source>
        <translation>Running... State :%1 Progress: %2</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="168"/>
        <source>Sitecon models</source>
        <translation type="unfinished">Sitecon models</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="75"/>
        <source>Select file with alignment</source>
        <translation>Select file with alignment</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="165"/>
        <source>Select file to save model to...</source>
        <translation>Select file to save model to...</translation>
    </message>
</context>
<context>
    <name>U2::SiteconBuildTask</name>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="185"/>
        <source>Build SITECON model</source>
        <translation>Build SITECON model</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="195"/>
        <source>Alignment contains gaps</source>
        <translation>Alignment contains gaps</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="199"/>
        <source>Alignment is empty</source>
        <translation>Alignment is empty</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="203"/>
        <source>Alignment must have at least 2 sequences</source>
        <translation>Alignment must have at least 2 sequences</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="207"/>
        <source>Alignment is not nucleic</source>
        <translation>Alignment is not nucleic</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="211"/>
        <source>Window size is greater than alignment length</source>
        <translation>Window size is greater than alignment length</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="225"/>
        <source>Calculating average and dispersion matrixes</source>
        <translation>Calculating average and dispersion matrixes</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="230"/>
        <source>Calculating weights</source>
        <translation>Calculating weights</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="236"/>
        <source>Calibrating first type error</source>
        <translation>Calibrating first type error</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="242"/>
        <source>Calibrating second type error</source>
        <translation>Calibrating second type error</translation>
    </message>
</context>
<context>
    <name>U2::SiteconBuildToFileTask</name>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="250"/>
        <source>Build SITECON model to file</source>
        <translation>Build SITECON model to file</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="261"/>
        <source>Unknown alignment format</source>
        <translation>Unknown alignment format</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="269"/>
        <source>Loading alignment</source>
        <translation>Loading alignment</translation>
    </message>
    <message>
        <location filename="../src/SiteconBuildDialogController.cpp" line="288"/>
        <source>No alignment found</source>
        <translation>No alignment found</translation>
    </message>
</context>
<context>
    <name>U2::SiteconIO</name>
    <message>
        <location filename="../src/SiteconIO.cpp" line="107"/>
        <source>Not a sitecon model</source>
        <translation>Not a sitecon model</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="151"/>
        <source>Error parsing settings, line %1</source>
        <translation>Error parsing settings, line %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="162"/>
        <source>Error parsing window size: %1</source>
        <translation>Error parsing window size: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="175"/>
        <source>Error parsing calibration len: %1</source>
        <translation>Error parsing calibration len: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="181"/>
        <source>Error parsing RSEED: %1</source>
        <translation>Error parsing RSEED: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="187"/>
        <source>Error parsing number of sequence in original alignment: %1</source>
        <translation>Error parsing number of sequence in original alignment: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="193"/>
        <source>Error parsing in alignment %1</source>
        <translation>Error parsing in alignment %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="262"/>
        <source>Error parsing %1 in line %2</source>
        <translation>Error parsing %1 in line %2</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="280"/>
        <source>Error parsing in line %1</source>
        <translation>Error parsing in line %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="290"/>
        <location filename="../src/SiteconIO.cpp" line="295"/>
        <source>Error parsing %1</source>
        <translation>Error parsing %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="299"/>
        <source>Illegal error %1</source>
        <translation>Illegal error %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="309"/>
        <source>Error parsing file in line %1</source>
        <translation>Error parsing file in line %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="318"/>
        <source>Number of &apos;average&apos; and  &apos;sdev&apos; properties not matches</source>
        <translation>Number of &apos;average&apos; and  &apos;sdev&apos; properties not matches</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="323"/>
        <source>Number of &apos;average&apos; and &apos;weight&apos; properties not matches</source>
        <translation>Number of &apos;average&apos; and &apos;weight&apos; properties not matches</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="328"/>
        <source>Property in file %1 is not the same as built-in: %2</source>
        <translation>Property in file %1 is not the same as built-in: %2</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="356"/>
        <source>Error info in file is not complete</source>
        <translation>Error info in file is not complete</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="363"/>
        <source>Model verification error</source>
        <translation>Model verification error</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="201"/>
        <source>Illegal weight algorithm: %1</source>
        <translation>Illegal weight algorithm: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="213"/>
        <source>Model size not matched: %1, expected: %2</source>
        <translation>Model size not matched: %1, expected: %2</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="236"/>
        <source>Duplicate property: %1</source>
        <translation>Duplicate property: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="246"/>
        <source>Property not recognized: %1</source>
        <translation>Property not recognized: %1</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="63"/>
        <location filename="../src/SiteconIOWorkers.cpp" line="139"/>
        <location filename="../src/SiteconIOWorkers.cpp" line="148"/>
        <source>Sitecon model</source>
        <translation>Sitecon model</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="71"/>
        <source>SITECON</source>
        <translation>SITECON</translation>
    </message>
    <message>
        <location filename="../src/SiteconIO.cpp" line="50"/>
        <source>Sitecon models</source>
        <translation>Sitecon models</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="139"/>
        <source>Input Sitecon model</source>
        <translation>Input Sitecon model</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="141"/>
        <source>Saves all input SITECON profiles to specified location.</source>
        <translation>Saves all input SITECON profiles to specified location.</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="141"/>
        <source>Write SITECON Model</source>
        <translation>Write SITECON Model</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="148"/>
        <source>Loaded SITECON profile data.</source>
        <translation>Loaded SITECON profile data.</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="154"/>
        <source>Reads SITECON profiles from file(s). The files can be local or Internet URLs.</source>
        <translation>Reads SITECON profiles from file(s). The files can be local or Internet URLs.</translation>
    </message>
    <message>
        <location filename="../src/SiteconIOWorkers.cpp" line="154"/>
        <source>Read SITECON Model</source>
        <translation>Read SITECON Model</translation>
    </message>
</context>
<context>
    <name>U2::SiteconPlugin</name>
    <message>
        <location filename="../src/SiteconPlugin.cpp" line="60"/>
        <source>SITECON</source>
        <translation>SITECON</translation>
    </message>
    <message>
        <location filename="../src/SiteconPlugin.cpp" line="60"/>
        <source>SITECON - is a program package for revealing and analysis of conservative conformational and physicochemical properties in transcription factor binding sites sets.</source>
        <translation>SITECON - is a program package for revealing and analysis of conservative conformational and physicochemical properties in transcription factor binding sites sets.</translation>
    </message>
    <message>
        <location filename="../src/SiteconPlugin.cpp" line="66"/>
        <source>Build SITECON model...</source>
        <translation>Build SITECON model...</translation>
    </message>
</context>
<context>
    <name>U2::SiteconReadMultiTask</name>
    <message>
        <location filename="../src/SiteconQuery.cpp" line="231"/>
        <source>Load sitecon models task</source>
        <translation>Load sitecon models task</translation>
    </message>
</context>
<context>
    <name>U2::SiteconReadTask</name>
    <message>
        <location filename="../src/SiteconIO.h" line="52"/>
        <source>Read SITECON Model</source>
        <translation>Read SITECON Model</translation>
    </message>
</context>
<context>
    <name>U2::SiteconSearchDialogController</name>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="90"/>
        <source>Search</source>
        <translation>Search</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="91"/>
        <location filename="../src/SiteconSearchDialogController.cpp" line="153"/>
        <source>Cancel</source>
        <translation>Cancel</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="153"/>
        <source>Close</source>
        <translation>Close</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="165"/>
        <source>Progress: %1% </source>
        <translation>Progress: %1% </translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="167"/>
        <source>%1 results found</source>
        <translation>%1 results found</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="186"/>
        <source>Select file with SITECON model</source>
        <translation>Select file with SITECON model</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="195"/>
        <location filename="../src/SiteconSearchDialogController.cpp" line="300"/>
        <location filename="../src/SiteconSearchDialogController.cpp" line="310"/>
        <location filename="../src/SiteconSearchDialogController.cpp" line="322"/>
        <source>Error</source>
        <translation>Error</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="231"/>
        <source>%1%,  first type error %2,  second type error %3</source>
        <translation>%1%,  first type error %2,  second type error %3</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="300"/>
        <source>No model selected</source>
        <translation>No model selected</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="310"/>
        <source>Range is too small</source>
        <translation>Range is too small</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="322"/>
        <source>Error parsing minumum score</source>
        <translation>Error parsing minumum score</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="386"/>
        <source>Complement strand</source>
        <translation>Complement strand</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchDialogController.cpp" line="386"/>
        <source>Direct strand</source>
        <translation>Direct strand</translation>
    </message>
</context>
<context>
    <name>U2::SiteconSearchTask</name>
    <message>
        <location filename="../src/SiteconSearchTask.cpp" line="28"/>
        <source>SITECON search</source>
        <translation>SITECON search</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchTask.cpp" line="45"/>
        <source>SITECON search parallel subtask</source>
        <translation>SITECON search parallel subtask</translation>
    </message>
    <message>
        <location filename="../src/SiteconSearchTask.cpp" line="65"/>
        <source>Internal error: invalid PSUM: %1</source>
        <translation>Internal error: invalid PSUM: %1</translation>
    </message>
</context>
<context>
    <name>U2::SiteconWriteTask</name>
    <message>
        <location filename="../src/SiteconIO.h" line="65"/>
        <source>Save SITECON model</source>
        <translation>Save SITECON model</translation>
    </message>
</context>
</TS>
