page1
genome/reads
verylongandawkwardnames.fastq.gz
short.fastqc.gz
short.fastqc.html
short.fastqc.gzip
shortnames.py
rename.py
fastqc
genome/reads.Trimmomatic
short.fq.gz
short.fq
short.fastqc.html
short.fastqc.gzip
fastqc
Trimmomatic
genome/reads.Trimmomatic.pollux
short.corrected.fq
short.fastqc.html
short.fastqc.gzip
fastqc
decompress
pollux
genome/reads.Trimmomatic.pollux.abyss
short.contigs.fa
short.scaffolds.fa
quast_results
quast.log
report.html
report.tsv
etc...
quast
pollux
ABySS (or Spades
SOAPdenovo2)