BLASTP 2.10.0+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.


Reference for
composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: Non-redundant UniProtKB/SwissProt sequences
           466,914 sequences; 175,696,908 total letters



Query= QHD43416.1 surface glycoprotein [Severe acute respiratory syndrome
coronavirus 2]

Length=1273
                                                                      Score        E
Sequences producing significant alignments:                          (Bits)     Value

P59594.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  2039       0.0   
Q3LZX1.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  2001       0.0   
Q3I5J5.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  1986       0.0   
Q0Q475.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  1974       0.0   
A3EXG6.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  614        0.0   
A3EXD0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  600        0.0   
Q0Q4F2.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  571        4e-180
K9N5Q8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  554        1e-173
P11225.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  526        3e-164
A3EX94.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  499        5e-153
P25192.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  485        5e-148
Q9QAQ8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  485        5e-148
Q91A26.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  484        8e-148
Q8V436.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  484        1e-147
Q9QAR5.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  484        2e-147
P25194.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  481        2e-146
P25191.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  479        2e-145
P15777.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  478        4e-145
P25190.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  477        4e-145
P25193.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  474        9e-144
Q0ZME7.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  467        2e-141
Q14EB0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  466        7e-141
P36334.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  464        2e-140
P11224.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  459        7e-139
Q8JSP8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  459        2e-138
Q8BB25.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  459        2e-138
Q02385.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  459        3e-138
P22432.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  459        4e-138
Q9IKD1.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  455        5e-137
Q5MQD0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  452        4e-136
P15423.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  364        2e-105
P12650.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  352        2e-101
P12651.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  349        2e-100
P05135.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  347        2e-99 
Q6Q1S2.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  349        3e-99 
P12722.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  345        5e-99 
P27655.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  344        4e-98 
P11223.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  341        2e-97 
P24413.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  338        3e-96 
Q65984.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  339        2e-95 
Q0Q466.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  337        4e-95 
P10033.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  337        8e-95 
P07946.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  337        1e-94 
Q7T6T3.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  337        1e-94 
P33470.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  335        4e-94 
Q01977.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  334        1e-93 
P18450.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  332        5e-93 
P36300.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  328        9e-92 
Q91AV1.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; ...  314        3e-87 


>P59594.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1255

 Score = 2039 bits (5282),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 971/1277 (76%), Positives = 1109/1277 (87%), Gaps = 26/1277 (2%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQ--LPPAYTN--SFTRGVYYPDKVFRSSVLHSTQDLFL  56
             MF+FL+ L L S   ++  T       P YT   S  RGVYYPD++FRS  L+ TQDLFL
Sbjct  1     MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFL  60

Query  57    PFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQS  116
             PF+SNVT FH I+         F NPV+PF DG+YFA+TEKSN++RGW+FG+T+++K+QS
Sbjct  61    PFYSNVTGFHTIN-------HTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQS  113

Query  117   LLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFL  176
             ++I+NN+TNVVI+ C F+ C++PF  V    +     ++   ++ +A NCTFEY+S  F 
Sbjct  114   VIIINNSTNVVIRACNFELCDNPFFAV----SKPMGTQTHTMIFDNAFNCTFEYISDAFS  169

Query  177   MDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINIT  236
             +D+  K GNFK+LREFVFKN DG+  +Y  + PI++VRDLP GF+ L+P+  LP+GINIT
Sbjct  170   LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT  229

Query  237   RFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPL  296
              F+ +L    +  +P      W   AAAY+VGYL+P TF+LKY+ENGTITDAVDC+ +PL
Sbjct  230   NFRAIL----TAFSPAQDI--WGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPL  283

Query  297   SETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRK  356
             +E KC++KSF ++KGIYQTSNFRV P+  +VRFPNITNLCPFGEVFNAT+F SVYAW RK
Sbjct  284   AELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERK  343

Query  357   RISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTG  416
             +ISNCVADYSVLYNS  FSTFKCYGVS TKLNDLCF+NVYADSFV++GD+VRQIAPGQTG
Sbjct  344   KISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTG  403

Query  417   KIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAG  476
              IADYNYKLPDDF GCV+AWN+ N+D+   GNYNY YR  R   L+PFERDIS   +   
Sbjct  404   VIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPD  463

Query  477   STPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN  536
               PC      NCY+PL  YGF  T G+GYQPYRVVVLSFELL+APATVCGPK ST+L+KN
Sbjct  464   GKPCTP-PALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKN  522

Query  537   KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS  596
             +CVNFNFNGLTGTGVLT S+K+F PFQQFGRD++D TD+VRDP+T EILDI+PCSFGGVS
Sbjct  523   QCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVS  582

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV  656
             VITPGTN S++VAVLYQDVNCT+V  AIHADQLTP WR+YSTG+NVFQT+AGCLIGAEHV
Sbjct  583   VITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHV  642

Query  657   NNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPT  716
             + SYECDIPIGAGICASY T +      RS + +SI+AYTMSLGA++S+AYSNN+IAIPT
Sbjct  643   DTSYECDIPIGAGICASYHTVS----LLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPT  698

Query  717   NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK  776
             NF+IS+TTE++PVSM KTSVDC MYICGDSTEC+NLLLQYGSFCTQLNRAL+GIA EQD+
Sbjct  699   NFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDR  758

Query  777   NTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQ  836
             NT+EVFAQVKQ+YKTP +K FGGFNFSQILPDP KP+KRSFIEDLLFNKVTLADAGF+KQ
Sbjct  759   NTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQ  818

Query  837   YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQI  896
             YG+CLGDI ARDLICAQKFNGLTVLPPLLTD+MIA YT+AL++GT T+GWTFGAGAALQI
Sbjct  819   YGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQI  878

Query  897   PFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNA  956
             PFAMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNA
Sbjct  879   PFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNA  938

Query  957   QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA  1016
             QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA
Sbjct  939   QALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAA  998

Query  1017  EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFT  1076
             EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFT
Sbjct  999   EIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFT  1058

Query  1077  TAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNT  1136
             TAPAICH+GKA+FPREGVFV NGT WF+TQRNF+ PQIITTDNTFVSGNCDVVIGI+NNT
Sbjct  1059  TAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNT  1118

Query  1137  VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES  1196
             VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES
Sbjct  1119  VYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNES  1178

Query  1197  LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKF  1256
             LIDLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKF
Sbjct  1179  LIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKF  1238

Query  1257  DEDDSEPVLKGVKLHYT  1273
             DEDDSEPVLKGVKLHYT
Sbjct  1239  DEDDSEPVLKGVKLHYT  1255


>Q3LZX1.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1242

 Score = 2001 bits (5184),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 968/1273 (76%), Positives = 1087/1273 (85%), Gaps = 35/1273 (3%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60
             +F FL  L      C  ++ + Q   A  +S  RGVYY D +FRS VLH TQD FLPF S
Sbjct  5     IFAFLANLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSDVLHLTQDYFLPFDS  64

Query  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
             N+T + +++V     T  FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS +IV
Sbjct  65    NLTQYFSLNVDSDRYT-YFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAVIV  123

Query  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180
             NN+T+++I+VC F  C +P   V       +W      VY SA NCT++ V + F +D  
Sbjct  124   NNSTHIIIRVCNFNLCKEPMYTVSRGTQQNAW------VYQSAFNCTYDRVEKSFQLDTT  177

Query  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240
              K GNFK+LRE+VFKN DG+  +Y  +T +NL R LP GFS L+P++ LP GINIT ++ 
Sbjct  178   PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPTGFSVLKPILKLPFGINITSYRV  237

Query  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300
             ++A+         ++S +   +AAYYVG L+  TF+L++NENGTITDAVDC+ +PL+E K
Sbjct  238   VMAMF------SQTTSNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELK  291

Query  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360
             CT+K+F V+KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+
Sbjct  292   CTIKNFNVDKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD  351

Query  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
             CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG IAD
Sbjct  352   CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD  411

Query  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480
             YNYKLPDDFTGCVIAWN+   D+      NY YR  RK+ LKPFERD+S++         
Sbjct  412   YNYKLPDDFTGCVIAWNTAKHDTG-----NYYYRSHRKTKLKPFERDLSSD-------DG  459

Query  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540
             NGV      + L +Y F P   V YQ  RVVVLSFELL+APATVCGPK ST LVKN+CVN
Sbjct  460   NGV------YTLSTYDFNPNVPVAYQATRVVVLSFELLNAPATVCGPKLSTELVKNQCVN  513

Query  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600
             FNFNGL GTGVLT S+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP
Sbjct  514   FNFNGLKGTGVLTSSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP  573

Query  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
             GTN S++VAVLYQDVNCT+VP AI ADQLTP WRVYSTG NVFQT+AGCLIGAEHVN SY
Sbjct  574   GTNASSEVAVLYQDVNCTDVPTAIRADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNASY  633

Query  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720
             ECDIPIGAGICASY T +      RS   +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I
Sbjct  634   ECDIPIGAGICASYHTAS----VLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI  689

Query  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780
             SVTTE++PVSM KT+VDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNTQE
Sbjct  690   SVTTEVMPVSMAKTAVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQE  749

Query  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840
             VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYGDC
Sbjct  750   VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGDC  809

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
             LGD++ARDLICAQKFNGLTVLPPLLTDEM+A YT+AL++GT T+GWTFGAGAALQIPFAM
Sbjct  810   LGDVSARDLICAQKFNGLTVLPPLLTDEMVAAYTAALVSGTATAGWTFGAGAALQIPFAM  869

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960
             QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ+SLSSTASALGKLQDVVNQNAQALN
Sbjct  870   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALN  929

Query  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020
             TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA
Sbjct  930   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  989

Query  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080
             SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP+QEKNFTTAPA
Sbjct  990   SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPA  1049

Query  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQ+ITTDNTFVSGNCDVVIGI+NNTVYDP
Sbjct  1050  ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQLITTDNTFVSGNCDVVIGIINNTVYDP  1109

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200
             LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Sbjct  1110  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1169

Query  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260
             QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD
Sbjct  1170  QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD  1229

Query  1261  SEPVLKGVKLHYT  1273
             SEPVLKGVKLHYT
Sbjct  1230  SEPVLKGVKLHYT  1242


>Q3I5J5.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1241

 Score = 1986 bits (5145),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 959/1273 (75%), Positives = 1083/1273 (85%), Gaps = 36/1273 (3%)

Query  1     MFVFLVLLPLVSSQCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFS  60
             +  FL  L      C  ++ + Q   A  +S  RGVYY D +FRS+VLH TQD FLPF S
Sbjct  5     ILAFLASLAKAQEGCGIISRKPQPKMAQVSSSRRGVYYNDDIFRSNVLHLTQDYFLPFDS  64

Query  61    NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
             N+T + +++V     T  FDNP+L F DGVYFA+TEKSN+IRGWIFG+T D+ TQS +IV
Sbjct  65    NLTQYFSLNVDSDRFT-YFDNPILDFGDGVYFAATEKSNVIRGWIFGSTFDNTTQSAVIV  123

Query  121   NNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLE  180
             NN+T+++I+VC F  C +P   V       SW      VY SA NCT++ V + F +D  
Sbjct  124   NNSTHIIIRVCNFNLCKEPMYTVSRGAQQSSW------VYQSAFNCTYDRVEKSFQLDTA  177

Query  181   GKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQT  240
              K GNFK+LRE+VFKN DG+  +Y  +T +NL R LP GFS L P++ LP GINIT ++ 
Sbjct  178   PKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGLPIGFSVLRPILKLPFGINITSYRV  237

Query  241   LLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETK  300
             ++A+         ++S +   +AAYYVG L+  TF+L +NENGTIT+A+DCA +PL+E K
Sbjct  238   VMAMF------SQTTSNFLPESAAYYVGNLKYTTFMLSFNENGTITNAIDCAQNPLAELK  291

Query  301   CTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISN  360
             CT+K+F V KGIYQTSNFRV PT+ ++RFPNITN CPF +VFNATRF +VYAW R +IS+
Sbjct  292   CTIKNFNVSKGIYQTSNFRVSPTQEVIRFPNITNRCPFDKVFNATRFPNVYAWERTKISD  351

Query  361   CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
             CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG IAD
Sbjct  352   CVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIAD  411

Query  421   YNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPC  480
             YNYKLPDDFTGCVIAWN+   D        Y YR  RK+ LKPFERD+S++         
Sbjct  412   YNYKLPDDFTGCVIAWNTAKQDQG-----QYYYRSHRKTKLKPFERDLSSDE--------  458

Query  481   NGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVN  540
             NGV        L +Y F P+  V YQ  RVVVLSFELL+APATVCGPK ST LVKN+CVN
Sbjct  459   NGVR------TLSTYDFYPSVPVAYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQCVN  512

Query  541   FNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITP  600
             FNFNGL GTGVLTES+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVITP
Sbjct  513   FNFNGLKGTGVLTESSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVITP  572

Query  601   GTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY  660
             GTN S++VAVLYQDVNCT+VP AIHADQLTP WRVYSTG+NVFQT+AGCLIGAEHVN SY
Sbjct  573   GTNASSEVAVLYQDVNCTDVPAAIHADQLTPAWRVYSTGTNVFQTQAGCLIGAEHVNASY  632

Query  661   ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTI  720
             ECDIPIGAGICASY T +      RSV  +SI+AYTMSLGAENS+AY+NNSIAIPTNF+I
Sbjct  633   ECDIPIGAGICASYHTAST----LRSVGQKSIVAYTMSLGAENSIAYANNSIAIPTNFSI  688

Query  721   SVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQE  780
             SVTTE++PVSM KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRAL+GIA+EQDKNTQE
Sbjct  689   SVTTEVMPVSMAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQE  748

Query  781   VFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDC  840
             VFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG+C
Sbjct  749   VFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYGEC  808

Query  841   LGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAM  900
             LGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPFAM
Sbjct  809   LGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAM  868

Query  901   QMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALN  960
             QMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVNQNAQALN
Sbjct  869   QMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALN  928

Query  961   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  1020
             TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA
Sbjct  929   TLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRA  988

Query  1021  SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPA  1080
             SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTAPA
Sbjct  989   SANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPA  1048

Query  1081  ICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDP  1140
             ICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+G+CDVVIGI+NNTVYDP
Sbjct  1049  ICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGSCDVVIGIINNTVYDP  1108

Query  1141  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1200
             LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL
Sbjct  1109  LQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDL  1168

Query  1201  QELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDD  1260
             QELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDEDD
Sbjct  1169  QELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDD  1228

Query  1261  SEPVLKGVKLHYT  1273
             SEPVLKGVKLHYT
Sbjct  1229  SEPVLKGVKLHYT  1241


>Q0Q475.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1241

 Score = 1974 bits (5113),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 953/1275 (75%), Positives = 1081/1275 (85%), Gaps = 38/1275 (3%)

Query  1     MFVFLVLLPLVSSQ--CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPF  58
             + +F +L  L  +Q  C  ++ + Q      +S  RGVYY D +FRS VLH TQD FLPF
Sbjct  3     VLIFALLFSLAKAQEGCGIISRKPQPKMEKVSSSRRGVYYNDDIFRSDVLHLTQDYFLPF  62

Query  59    FSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLL  118
              SN+T + ++++  +N    FDNP+L F DGVYFA+TEKSN+IRGWIFG++ D+ TQS +
Sbjct  63    DSNLTQYFSLNID-SNKYTYFDNPILDFGDGVYFAATEKSNVIRGWIFGSSFDNTTQSAI  121

Query  119   IVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMD  178
             IVNN+T+++I+VC F  C +P   V       SW      VY SA NCT++ V + F +D
Sbjct  122   IVNNSTHIIIRVCNFNLCKEPMYTVSKGTQQSSW------VYQSAFNCTYDRVEKSFQLD  175

Query  179   LEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRF  238
                K GNFK+LRE+VFKN DG+  +Y  +T +NL R  P GFS L P++ LP GINIT +
Sbjct  176   TAPKTGNFKDLREYVFKNRDGFLSVYQTYTAVNLPRGFPAGFSVLRPILKLPFGINITSY  235

Query  239   QTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSE  298
             + ++ +   +      +S +   +AAYYVG L+  TF+L +NENGTITDAVDC+ +PL+E
Sbjct  236   RVVMTMFSQF------NSNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAE  289

Query  299   TKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRI  358
              KCT+K+F V KGIYQTSNFRV PT+ +VRFPNITN CPF +VFNA+RF +VYAW R +I
Sbjct  290   LKCTIKNFNVSKGIYQTSNFRVTPTQEVVRFPNITNRCPFDKVFNASRFPNVYAWERTKI  349

Query  359   SNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKI  418
             S+CVADY+VLYNS SFSTFKCYGVSP+KL DLCFT+VYAD+F+IR  EVRQ+APG+TG I
Sbjct  350   SDCVADYTVLYNSTSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVI  409

Query  419   ADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGST  478
             ADYNYKLPDDFTGCVIAWN+   D        Y YR +RK  LKPFERD+S++       
Sbjct  410   ADYNYKLPDDFTGCVIAWNTAQQDQG-----QYYYRSYRKEKLKPFERDLSSDE------  458

Query  479   PCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKC  538
               NGV      + L +Y F P+  V YQ  RVVVLSFELL+APATVCGPK ST LVKN+C
Sbjct  459   --NGV------YTLSTYDFYPSIPVEYQATRVVVLSFELLNAPATVCGPKLSTQLVKNQC  510

Query  539   VNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVI  598
             VNFNFNGL GTGVLT S+K+F  FQQFGRD +D TD+VRDPQTLEILDI+PCSFGGVSVI
Sbjct  511   VNFNFNGLRGTGVLTTSSKRFQSFQQFGRDTSDFTDSVRDPQTLEILDISPCSFGGVSVI  570

Query  599   TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN  658
             TPGTN S++VAVLYQDVNCT+VP +IHADQLTP WRVYSTG NVFQT+AGCLIGAEHVN 
Sbjct  571   TPGTNASSEVAVLYQDVNCTDVPTSIHADQLTPAWRVYSTGVNVFQTQAGCLIGAEHVNA  630

Query  659   SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNF  718
             SYECDIPIGAGICASY T +      RS   +SI+AYTMSLGAENS+AY+NNSIAIPTNF
Sbjct  631   SYECDIPIGAGICASYHTAS----VLRSTGQKSIVAYTMSLGAENSIAYANNSIAIPTNF  686

Query  719   TISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNT  778
             +ISVTTE++PVS+ KTSVDCTMYICGDS ECSNLLLQYGSFCTQLNRALTGIA+EQDKNT
Sbjct  687   SISVTTEVMPVSIAKTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNT  746

Query  779   QEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYG  838
             QEVFAQVKQ+YKTP IKDFGGFNFSQILPDPSKP+KRSFIEDLLFNKVTLADAGF+KQYG
Sbjct  747   QEVFAQVKQMYKTPAIKDFGGFNFSQILPDPSKPTKRSFIEDLLFNKVTLADAGFMKQYG  806

Query  839   DCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPF  898
             +CLGDI+ARDLICAQKFNGLTVLPPLLTDEMIA YT+AL++GT T+GWTFGAG+ALQIPF
Sbjct  807   ECLGDISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPF  866

Query  899   AMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQA  958
             AMQMAYRFNGIGVTQNVLYENQK IANQFN AI +IQ+SL++T++ALGKLQDVVN NAQA
Sbjct  867   AMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNDNAQA  926

Query  959   LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI  1018
             LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI
Sbjct  927   LNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEI  986

Query  1019  RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTA  1078
             RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ+APHGVVFLHVTYVP+QE+NFTTA
Sbjct  987   RASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTA  1046

Query  1079  PAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVY  1138
             PAICH+GKA+FPREGVFVSNGT WF+TQRNFY PQIITTDNTFV+GNCDVVIGI+NNTVY
Sbjct  1047  PAICHEGKAYFPREGVFVSNGTSWFITQRNFYSPQIITTDNTFVAGNCDVVIGIINNTVY  1106

Query  1139  DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI  1198
             DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI
Sbjct  1107  DPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLI  1166

Query  1199  DLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDE  1258
             DLQELGKYEQYIKWPWY+WLGFIAGLIAIVMVTI+LCCMTSCCSCLKG CSCGSCCKFDE
Sbjct  1167  DLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDE  1226

Query  1259  DDSEPVLKGVKLHYT  1273
             DDSEPVLKGVKLHYT
Sbjct  1227  DDSEPVLKGVKLHYT  1241


>A3EXG6.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1274

 Score = 614 bits (1584),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 420/1286 (33%), Positives = 648/1286 (50%), Gaps = 118/1286 (9%)

Query  36    VYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIH-VSGTNGTKRFDNPVLPFNDGVYF--  92
             V  PD     S     Q+LF+   SN   +      +G NG   ++  ++P + G++   
Sbjct  45    VLLPDPYIAYSGQTLRQNLFMADMSNTILYPVTPPANGANGGFIYNTSIIPVSAGLFVNT  104

Query  93    -------ASTEKSNIIRGWIFGTTLDSKTQSLLIV-------------NNATNVVIKVCE  132
                    +S        G  FG T ++   ++LI+              N TN+ + VC 
Sbjct  105   WMYRQPASSRAYCQEPFGVAFGDTFENDRIAILIMAPDNLGSWSAVAPRNQTNIYLLVCS  164

Query  133   -FQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLRE  191
                 C +P  G        S++  +  V   +N+C   +V+  F +++   + +      
Sbjct  165   NATLCINP--GFNRWGPAGSFIAPDALV-DHSNSC---FVNNTFSVNISTSRISLA----  214

Query  192   FVFKNIDGYFKIY-SKHTPI-NLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRS-Y  248
             F+FK  DG   IY S   P  N      +G   +   + LP+G N+ R Q   ++ RS  
Sbjct  215   FLFK--DGDLLIYHSGWLPTSNFEHGFSRGSHPMTYFMSLPVGGNLPRAQFFQSIVRSNA  272

Query  249   LTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTV  308
             +  GD     T      +V +L  R  L+ Y  NG++ +A DCA     E  C   SF  
Sbjct  273   IDKGDGMC--TNFDVNLHVAHLINRDLLVSYFNNGSVANAADCADSAAEELYCVTGSFDP  330

Query  309   EKGIYQTSNFRVQPTESIVRFPNITNLC--PFGEVFNATRFASVYAWNRKRISNCVADYS  366
               G+Y  S +R Q     VR     + C  P+  + +  +      W R  + +CV D++
Sbjct  331   PTGVYPLSRYRAQ-VAGFVRVTQRGSYCTPPYSVLQDPPQ---PVVWRRYMLYDCVFDFT  386

Query  367   VLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP  426
             V+ +S      +CYGVSP +L  +C+ +V  D   I    +  +        + YNY LP
Sbjct  387   VVVDSLPTHQLQCYGVSPRRLASMCYGSVTLDVMRINETHLNNLFNRVPDTFSLYNYALP  446

Query  427   DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGF  486
             D+F GC+ A+  N+            Y +  +  +KP  R       Q+ S   + V   
Sbjct  447   DNFYGCLHAFYLNSTAP---------YAVANRFPIKPGGR-------QSNSAFIDTV---  487

Query  487   NCYFPLQSYGFQPTNGVGYQP----YRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFN  542
                           N   Y P    Y + V++ +       VC     T ++ ++CV +N
Sbjct  488   -------------INAAHYSPFSYVYGLAVITLKPAAGSKLVCPVANDTVVITDRCVQYN  534

Query  543   FNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPG  601
               G TGTGVL+++    +P  + F      T   V    T     I PC    VSV   G
Sbjct  535   LYGYTGTGVLSKNTSLVIPDGKVFTASSTGTIIGVSINST--TYSIMPCVTVPVSV---G  589

Query  602   TNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY-  660
              + + + A+L+  ++C++   A+  + ++  W   +T  + F T +GC++  E  N +  
Sbjct  590   YHPNFERALLFNGLSCSQRSRAV-TEPVSVLWSASATAQDAFDTPSGCVVNVELRNTTIV  648

Query  661   -ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---IAIPT  716
               C +PIG  +C  +   + +   A S+    ++ Y      +NS A        + +PT
Sbjct  649   NTCAMPIGNSLC--FINGSIATANADSLPRLQLVNYDPLY--DNSTATPMTPVYWVKVPT  704

Query  717   NFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDK  776
             NFT+S T E +  +  K ++DC  Y+CGDS+ C N+LL YG+FC  +N+AL+ ++   D 
Sbjct  705   NFTLSATEEYIQTTAPKITIDCARYLCGDSSRCLNVLLHYGTFCNDINKALSRVSTILDS  764

Query  777   NTQEVFAQVKQIYKTPPIKDF---GGFNFSQIL----PDPSKPSKRSFIEDLLFNKVTLA  829
                 +  ++  I     +  F   G +NF+ ++    P+    + RS   DLL++KV + 
Sbjct  765   ALLSLVKELS-INTRDEVTTFSFDGDYNFTGLMGCLGPNCGATTYRSAFSDLLYDKVRIT  823

Query  830   DAGFIKQYGDCL-----GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITS  884
             D GF++ Y  C+     G I  RDL+C Q +NG+ VLPP+++  M A YTS L+    +S
Sbjct  824   DPGFMQSYQKCIDSQWGGSI--RDLLCTQTYNGIAVLPPIVSPAMQALYTSLLVGAVASS  881

Query  885   GWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASA  944
             G+TFG  +A  IPFA Q+ +R NGIGVT  VL ENQKLIA+ FN+A+  IQ   + T+ A
Sbjct  882   GYTFGITSAGVIPFATQLQFRLNGIGVTTQVLVENQKLIASSFNNALVNIQKGFTETSIA  941

Query  945   LGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSL  1004
             L K+QDV+NQ+A  L+TLV QL ++FGAISS +N+I SRL+ + A  ++DRLI GR+  L
Sbjct  942   LSKMQDVINQHAAQLHTLVVQLGNSFGAISSSINEIFSRLEGLAANAEVDRLINGRMMVL  1001

Query  1005  QTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLH  1064
              TYVTQ LI+A+E +A   LAA K+SECV  QS R DFCG G H++S PQ AP+GV+F+H
Sbjct  1002  NTYVTQLLIQASEAKAQNALAAQKISECVKAQSLRNDFCGNGTHVLSIPQLAPNGVLFIH  1061

Query  1065  VTYVPAQEKNFTTAPAICHDGKAHFPREGVFV--SNGTHWFVTQRNFYEPQIITTDNTFV  1122
               Y P +     T+  +CH+G  + PR+G+FV  +N   W  T   FY P  I+  NT V
Sbjct  1062  YAYTPTEYAFVQTSAGLCHNGTGYAPRQGMFVLPNNTNMWHFTTMQFYNPVNISASNTQV  1121

Query  1123  SGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKE  1182
               +C V    VN TV +P  P    F++E DK++KN ++   +  + +  N S V++  +
Sbjct  1122  LTSCSVNYTSVNYTVLEPSVPGDYDFQKEFDKFYKNLSTIFNNTFNPNDFNFSTVDVTAQ  1181

Query  1183  IDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCS  1242
             I  L++V   LN+S IDL++L  YE+ IKWPWY+WL  IAG++ +V+  IML CMT+CCS
Sbjct  1182  IKSLHDVVNQLNQSFIDLKKLNVYEKTIKWPWYVWLAMIAGIVGLVLAVIMLMCMTNCCS  1241

Query  1243  CLKGCCSCGSCC-KFDE-DDSEPVLK  1266
             C KG C C  CC  +D  DD  P ++
Sbjct  1242  CFKGMCDCRRCCGSYDSYDDVYPAVR  1267


>A3EXD0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1352

 Score = 600 bits (1546),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/1067 (37%), Positives = 564/1067 (53%), Gaps = 71/1067 (7%)

Query  246   RSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKS  305
             RS  +P +    W    AA+Y+  L P T+LL ++  G IT AVDC  D L++ +C+ +S
Sbjct  306   RSIRSPFNDRKAW----AAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDLAQLQCSYES  361

Query  306   FTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADY  365
             F VE G+Y  S+F   P    +     T  C F  +   T    +Y + R   +NC  + 
Sbjct  362   FEVETGVYSVSSFEASPRGEFIE-QATTQECDFTPMLTGTP-PPIYNFKRLVFTNCNYNL  419

Query  366   SVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKL  425
             + L +    S F C+ VSP+ L   C++++  D F    D    + PG  G I  +NYK 
Sbjct  420   TKLLSLFQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGAIVQFNYK-  478

Query  426   PDDF---TGCVIAWNSNNLDSKVG-GNYNYLYRLFRKSNLKPFERDISTEIYQA--GSTP  479
               DF   T  V+A    NL +     NY YL   ++ S            +Y A    TP
Sbjct  479   -QDFSNPTCRVLATVPQNLTTITKPSNYAYLTECYKTSAYG------KNYLYNAPGAYTP  531

Query  480   CNGV--EGFNCYFPLQSYGFQPTNGVGY----QPYRVVVLSFELLHAPATVCGPKKSTN-  532
             C  +   GF+  +   S G   T G  Y          ++S +      +VC  +   N 
Sbjct  532   CLSLASRGFSTKYQSHSDGELTTTGYIYPVTGNLQMAFIISVQYGTDTNSVCPMQALRND  591

Query  533   -LVKNK---CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDIT  588
               +++K   CV ++ +G+TG GV        L  Q+F  D  D               + 
Sbjct  592   TSIEDKLDVCVEYSLHGITGRGVFHNCTSVGLRNQRFVYDTFDNLVGYHSDNG-NYYCVR  650

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRA  647
             PC    VSVI      SN  A L+  V C+ V   +    ++T T  +  T     QT  
Sbjct  651   PCVSVPVSVIY--DKASNSHATLFGSVACSHVTTMMSQFSRMTKTNLLARTTPGPLQTTV  708

Query  648   GCLIGAEHVNNSY---ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
             GC +G   +N+S    EC +P+G  +CA   T ++  RRA S AS      T++  +  +
Sbjct  709   GCAMG--FINSSMVVDECQLPLGQSLCAIPPTTSSRVRRATSGASDVFQIATLNFTSPLT  766

Query  705   VAYSNNS---IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCT  761
             +A  N++   +A+PTNFT  VT E +  ++ K +VDC  Y+C    +C +LL +YG FC+
Sbjct  767   LAPINSTGFVVAVPTNFTFGVTQEFIETTIQKITVDCKQYVCNGFKKCEDLLKEYGQFCS  826

Query  762   QLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQI-LPDPSKPSK--RS  816
             ++N+AL G  + QD++   +F+ +K    T P++    G FN + + +P  +   +  RS
Sbjct  827   KINQALHGANLRQDESIANLFSSIK-TQNTQPLQAGLNGDFNLTMLQIPQVTTGERKYRS  885

Query  817   FIEDLLFNKVTLADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYT  874
              IEDLLFNKVT+AD G+++ Y +C+  G  +ARDLICAQ   G  VLPPL    M A YT
Sbjct  886   TIEDLLFNKVTIADPGYMQGYDECMQQGPQSARDLICAQYVAGYKVLPPLYDPYMEAAYT  945

Query  875   SALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI  934
             S+LL     + WT G  +   IPFA  + YR NG+G+TQ VL ENQK+IAN+FN A+G +
Sbjct  946   SSLLGSIAGASWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKIIANKFNQALGAM  1005

Query  935   QDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQID  994
             Q   ++T  A  K+QD VN NA AL+ L  +LS+ FGAISS ++DIL+RLD VE E QID
Sbjct  1006  QTGFTTTNLAFNKVQDAVNANAMALSKLAAELSNTFGAISSSISDILARLDTVEQEAQID  1065

Query  995   RLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQ  1054
             RLI GRL SL  +V QQL+R      SA LA  K++ECV  QSKR  FCG G H++SF  
Sbjct  1066  RLINGRLTSLNAFVAQQLVRTEAAARSAQLAQDKVNECVKSQSKRNGFCGTGTHIVSFAI  1125

Query  1055  SAPHGVVFLHVTYVPAQEKNFTTAPAICHD---GKAHFPREGVFVSNGT---------HW  1102
             +AP+G+ F HV Y P    N T A  +C+     K   P +G FV N T          W
Sbjct  1126  NAPNGLYFFHVGYQPTSHVNATAAYGLCNTENPQKCIAPIDGYFVLNQTTSTVADSDQQW  1185

Query  1103  FVTQRNFYEPQIITTDNT-FVSGNCDVVIGIVNNTVYDPL---QPELDSFKEELDKYFKN  1158
             + T  +F+ P+ IT  N+ +VS   DV    + N +  PL     +LD FKEEL+++FKN
Sbjct  1186  YYTGSSFFHPEPITEANSKYVS--MDVKFENLTNRLPPPLLSNSTDLD-FKEELEEFFKN  1242

Query  1159  HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL  1218
              +S   +  +IS IN +++N+  E+  L+EV K LNES IDL+ELG Y  Y KWPWYIWL
Sbjct  1243  VSSQGPNFQEISKINTTLLNLNTELMVLSEVVKQLNESYIDLKELGNYTFYQKWPWYIWL  1302

Query  1219  GFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPV  1264
             GFIAGL+A+ +    + C T C +   G   C  CC  +DE + E +
Sbjct  1303  GFIAGLVALALCVFFILCCTGCGTSCLGKLKCNRCCDSYDEYEVEKI  1349


>Q0Q4F2.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1350

 Score = 571 bits (1471),  Expect = 4e-180, Method: Compositional matrix adjust.
 Identities = 398/1096 (36%), Positives = 568/1096 (52%), Gaps = 91/1096 (8%)

Query  232   GINITRFQTL---------LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN  282
             G N+ RF TL           + RS+ +  +    W    AA+YV  L   T+LL ++ +
Sbjct  280   GGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVD  335

Query  283   GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVF  342
             G I  A+DC  D LS+  C+  SF V+ G+Y  S++    T + +  PN+T  C F  + 
Sbjct  336   GYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNVTE-CDFSPML  394

Query  343   NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI  402
                    VY + R   SNC  + + L +  +   F C G+SP  +   C++ +  D F  
Sbjct  395   TGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDAIARGCYSTLTVDYFAY  453

Query  403   RGDEVRQIAPGQTGKIADYNYKLPDDFTGC-VIAWNSNNLDSKVGGNYNYLYRLFRKSNL  461
                    I PG  G I  YNYK       C V+A   +N+     G Y Y+ +  R   L
Sbjct  454   PLSMKSYIRPGSAGNIPLYNYKQSFANPTCRVMASVPDNVTITKPGAYGYISKCSR---L  510

Query  462   KPFERDISTEIYQAGSTPCNGVEGFNC--YFPL--------------QSYGFQPTNGVGY  505
                 +DI T +Y       N  E   C  + PL              Q  G     GVG 
Sbjct  511   TGVNQDIETPLY------INPGEYSICRDFAPLGFSEDGQVFKRTLTQFEGGGLLIGVGT  564

Query  506   Q-PYRV-----VVLSFELLHAPATVC-----GPKKSTNLVKNKCVNFNFNGLTGTGVLTE  554
             + P         V+S +      +VC     G   +      KCV+++  G+TG GV   
Sbjct  565   RVPMTANLEMGFVISVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQN  624

Query  555   SNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQD  614
                  +  Q+F  D  D               + PC    VSVI     ++N  A L+  
Sbjct  625   CTAVGVKQQRFVYDSFDNLVGYYSDDG-NYYCVRPCVSVPVSVIY--DKSTNLHATLFGS  681

Query  615   VNCTEVPVAIHA-DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY---ECDIPIGAGI  670
             V C  V   +    +LT +       +   QT  GC+IG    NNS    +C +P+G  +
Sbjct  682   VACEHVTTMMSQFSRLTQSNLRRRDSNTPLQTAVGCVIGLS--NNSLVVSDCKLPLGQSL  739

Query  671   CASYQTQTNSPRRARSVASQ---SIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEIL  727
             CA       S  R+ S ASQ   +++ YT  +     +  S  + AIPTNF+ S+T E +
Sbjct  740   CA---VPPVSMFRSYS-ASQFQLAVLNYTSPI-VVTPINSSGFTAAIPTNFSFSLTQEYI  794

Query  728   PVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ  787
               S+ K +VDC  Y+C   T C  LL++YG FC+++N+AL G  + QD++   +++ +K 
Sbjct  795   ETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQDESVYSLYSNIKT  854

Query  788   IY-KTPPIKDFGGFNFSQI-LPDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCL--GD  843
                +T      G FN + + +P     S RS IEDLLF+KVT+AD G+++ Y DC+  G 
Sbjct  855   TSTQTLEYGLNGDFNLTLLQVPQIGGSSYRSAIEDLLFDKVTIADPGYMQGYDDCMKQGP  914

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
              +ARDLICAQ  +G  VLPPL    M A YTS+LL     +GWT G  +   IPFA  M 
Sbjct  915   QSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSMF  974

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLV  963
             YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   +++  A  K+QD VN NAQAL+ L 
Sbjct  975   YRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDAVNANAQALSKLA  1034

Query  964   KQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASAN  1023
              +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL  +V+QQL+R+     SA 
Sbjct  1035  SELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLTSLNAFVSQQLVRSETAARSAQ  1094

Query  1024  LAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICH  1083
             LA+ K++ECV  QSKR  FCG G H++SF  +AP+G  F HV YVP    N T A  +C+
Sbjct  1095  LASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTNYTNVTAAYGLCN  1154

Query  1084  DGKAHF---PREGVFVSN-------GTHWFVTQRNFYEPQIITTDNT-FVSGNCDVVIGI  1132
                      P +G F++N        T W+ T  +F++P+ IT  N+ +VS   DV    
Sbjct  1155  HNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFFKPEPITQANSRYVSS--DVKFEK  1212

Query  1133  VNNTVYDPL---QPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEV  1189
             + N +  PL     ++D FK+EL+++FKN TS   +  +IS IN +++++  E+  L EV
Sbjct  1213  LENNLPPPLLENSTDVD-FKDELEEFFKNVTSHGPNFAEISKINTTLLDLSDEMAILQEV  1271

Query  1190  AKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCS  1249
              K LN+S IDL+ELG Y  Y KWPWYIWLGFIAGL+A+++    L C T C +   G   
Sbjct  1272  VKQLNDSYIDLKELGNYTYYNKWPWYIWLGFIAGLVALLLCVFFLLCCTGCGTSCLGKMK  1331

Query  1250  CGSCC-KFDEDDSEPV  1264
             C +CC  ++E D E +
Sbjct  1332  CKNCCDSYEEYDVEKI  1347


>K9N5Q8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1353

 Score = 554 bits (1427),  Expect = 1e-173, Method: Compositional matrix adjust.
 Identities = 372/1057 (35%), Positives = 548/1057 (52%), Gaps = 76/1057 (7%)

Query  263   AAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQP  322
             AA+YV  LQP TFLL ++ +G I  A+DC  + LS+  C+ +SF VE G+Y  S+F  +P
Sbjct  311   AAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKP  370

Query  323   TESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV  382
             + S+V        C F  + + T    VY + R   +NC  + + L +  S + F C  +
Sbjct  371   SGSVVEQAEGVE-CDFSPLLSGTP-PQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQI  428

Query  383   SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVI-AWNSNNL  441
             SP  +   C++++  D F         ++    G I+ +NYK       C+I A   +NL
Sbjct  429   SPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNL  488

Query  442   DSKVGG-NYNYLYRLFRKSNLKPFERDISTEIYQAGS----TPCNGV------EGFNCYF  490
              +      Y+Y+ +  R      F  D  TE+ Q  +    +PC  +      E  + Y 
Sbjct  489   TTITKPLKYSYINKCSR------FLSDDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYR  542

Query  491   ----PLQSYGFQPTNGVGYQPYRVVVLSFELLHAPAT----VCGPKKSTNLVK-----NK  537
                 PL+  G+   +G        + + F +     T    VC   +  N  K       
Sbjct  543   KQLSPLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGN  602

Query  538   CVNFNFNGLTGTGVLTESNKKFLPFQQFGRDI-ADTTDAVRDPQTLEILDITPCSFGGVS  596
             CV ++  G++G GV        +  Q+F  D   +      D      L    C    VS
Sbjct  603   CVEYSLYGVSGRGVFQNCTAVGVRQQRFVYDAYQNLVGYYSDDGNYYCL--RACVSVPVS  660

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAI--HADQLTPTWRVYSTGSNVFQTRAGCLIGAE  654
             VI      ++  A L+  V C  +   +  ++       +   +     QT  GC++G  
Sbjct  661   VIYDKETKTH--ATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGL-  717

Query  655   HVNNSY---ECDIPIGAGICASYQT-QTNSPRRARSVASQSIIAYTMSLGAENSVAYSNN  710
              VN+S    +C +P+G  +CA   T  T +PR  RSV  +  +A +++      V   N+
Sbjct  718   -VNSSLFVEDCKLPLGQSLCALPDTPSTLTPRSVRSVPGEMRLA-SIAFNHPIQVDQLNS  775

Query  711   S---IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRAL  767
             S   ++IPTNF+  VT E +  ++ K +VDC  Y+C    +C  LL +YG FC+++N+AL
Sbjct  776   SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQAL  835

Query  768   TGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGG-FNFSQILP---DPSKPSKRSFIEDLLF  823
              G  + QD + + +FA VK    +P I  FGG FN + + P        S RS IEDLLF
Sbjct  836   HGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLF  895

Query  824   NKVTLADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGT  881
             +KVT+AD G+++ Y DC+  G  +ARDLICAQ   G  VLPPL+   M A YTS+LL   
Sbjct  896   DKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSI  955

Query  882   ITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSST  941
                GWT G  +   IPFA  + YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   ++T
Sbjct  956   AGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTT  1015

Query  942   ASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRL  1001
               A  K+QD VN NAQAL+ L  +LS+ FGAIS+ + DI+ RLD +E + QIDRLI GRL
Sbjct  1016  NEAFHKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRL  1075

Query  1002  QSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVV  1061
              +L  +V QQL+R+     SA LA  K++ECV  QSKR  FCG+G H++SF  +AP+G+ 
Sbjct  1076  TTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLY  1135

Query  1062  FLHVTYVPAQEKNFTTAPAICHDGKAH---FPREGVFV-SNGT----HWFVTQRNFYEPQ  1113
             F+HV Y P+      +A  +C          P  G F+ +N T     W  T  +FY P+
Sbjct  1136  FMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPE  1195

Query  1114  IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL------DSFKEELDKYFKNHTSPDVDLG  1167
              IT+ NT       V   +    +   L P L        F++ELD++FKN ++   + G
Sbjct  1196  PITSLNTKY-----VAPQVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFG  1250

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              ++ IN +++++  E+  L +V K LNES IDL+ELG Y  Y KWPWYIWLGFIAGL+A+
Sbjct  1251  SLTQINTTLLDLTYEMLSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVAL  1310

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEP  1263
              +    + C T C +   G   C  CC +++E D EP
Sbjct  1311  ALCVFFILCCTGCGTNCMGKLKCNRCCDRYEEYDLEP  1347


>P11225.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1235

 Score = 526 bits (1354),  Expect = 3e-164, Method: Compositional matrix adjust.
 Identities = 421/1347 (31%), Positives = 623/1347 (46%), Gaps = 191/1347 (14%)

Query  1     MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
             +FVF++LLP            Q VN        P+ +      S  RG YY  D+V+ ++
Sbjct  2     LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGRGTYYVLDRVYLNA  61

Query  47    VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF-----------  92
              L  T   + P   + + +  + ++GTN      F  P L  FNDG++            
Sbjct  62    TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT  117

Query  93    -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
              A++    I+ G +FG T  S T  L   NN   ++  VC +  C  P+     + N   
Sbjct  118   GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR  173

Query  152   ----W-MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                 W  + +  +     N TF  V+ P+L               F F    G F  Y  
Sbjct  174   VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA  218

Query  207   HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAG---AA  263
               P           SA   L  + IG  +T++  L  +     TP       TAG   A 
Sbjct  219   DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP-------TAGSTLAP  256

Query  264   AYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPT  323
              Y+V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  S + VQP 
Sbjct  257   LYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPV  316

Query  324   ESIVR-FPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV  382
               + R  PN+ + C   E   A    S   W R+   NC  + S L       +  C  +
Sbjct  317   GVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNI  375

Query  383   SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLD  442
               +K+  +CF +V  D F I       +  G +G +   NYK+    T C          
Sbjct  376   DASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC----------  425

Query  443   SKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNG  502
                      LY    K+N+                     +  +N     + YGF+  + 
Sbjct  426   --------QLYYSLPKNNVT--------------------INNYNPSSWNRRYGFKVND-  456

Query  503   VGYQPYRVVVLSFELLHA--PATVCGPK---KSTNLVKNKCVNFNFNGLTGTGVLTESNK  557
                   R  + +  LL+     T C       +T +    CV ++  G+TG GV  E   
Sbjct  457   ------RCQIFANILLNGINSGTTCSTDLQLPNTEVATGVCVRYDLYGITGQGVFKEVKA  510

Query  558   KFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVN  616
              +   +Q    D+    +  RD  T +   I  C  G VS        + + A+LY+++N
Sbjct  511   DYYNSWQALLYDVNGNLNGFRDLTTNKTYTIRSCYSGRVSAAY--HKEAPEPALLYRNIN  568

Query  617   CTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSY--ECDIPIGAGICASY  674
             C+ V     + +  P         N F +  GC++ A++  +     C++ +GAG+C  Y
Sbjct  569   CSYVFTNNISREENPL--------NYFDSYLGCVVNADNRTDEALPNCNLRMGAGLCVDY  620

Query  675   QTQTNSPRRARSVASQSIIAYT----MSLGAENSVAYSNN--SIAIPTNFTISVTTEILP  728
                    RRAR   S      T    M +   +SV        + IPTNFTI    E + 
Sbjct  621   SKS----RRARRSVSTGYRLTTFEPYMPMLVNDSVQSVGGLYEMQIPTNFTIGHHEEFIQ  676

Query  729   VSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ-  787
             +   K ++DC  ++CGD+  C   L++YGSFC  +N  L  +    D    +V + + Q 
Sbjct  677   IRAPKVTIDCAAFVCGDNAACRQQLVEYGSFCDNVNAILNEVNNLLDNMQLQVASALMQG  736

Query  788   ---IYKTP-----PIKDFGGFNFSQILP-----------DPSKPSKRSFIEDLLFNKVTL  828
                  + P     PI D    NFS +L             PS    RS IEDLLF+KV L
Sbjct  737   VTISSRLPDGISGPIDDI---NFSPLLGCIGSTCAEDGNGPSAIRGRSAIEDLLFDKVKL  793

Query  829   ADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTF  888
             +D GF++ Y +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+   A  +   WT 
Sbjct  794   SDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKVLPPVLSESQISGYTAGATAAAMFPPWTA  853

Query  889   GAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKL  948
              AG    +PF++ + YR NG+GVT NVL ENQK+IA+ FN+A+G IQ+   +T SALGK+
Sbjct  854   AAG----VPFSLNVQYRINGLGVTMNVLSENQKMIASAFNNALGAIQEGFDATNSALGKI  909

Query  949   QDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYV  1008
             Q VVN NA+ALN L+ QLS+ FGAIS+ L +IL+RLD VEA+ QIDRLI GRL +L  Y+
Sbjct  910   QSVVNANAEALNNLLNQLSNRFGAISASLQEILTRLDAVEAKAQIDRLINGRLTALNAYI  969

Query  1009  TQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYV  1068
             ++QL  +  I+ SA  A  K++ECV  Q+ R++FCG G H++S  Q+AP+G+ F+H +YV
Sbjct  970   SKQLSDSTLIKFSAAQAIEKVNECVKSQTTRINFCGNGNHILSLVQNAPYGLCFIHFSYV  1029

Query  1069  PAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCD  1127
             P   K    +P +C  G +   P+ G FV +   W  T  N+Y P+ IT  N+    +C 
Sbjct  1030  PTSFKTANVSPGLCISGDRGLAPKAGYFVQDNGEWKFTGSNYYYPEPITDKNSVAMISCA  1089

Query  1128  VVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTS--PDVDLGDISGINASVVNIQKEIDR  1185
             V          +   P L  FKEELDK+FKN TS  PD+ L D   +N + +++  E++R
Sbjct  1090  VNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQTSIAPDLSL-DFEKLNVTFLDLTYEMNR  1148

Query  1186  LNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLK  1245
             + +  K LNES I+L+E+G YE Y+KWPWY+WL  + GL  + +  ++            
Sbjct  1149  IQDAIKKLNESYINLKEVGTYEMYVKWPWYVWL--LIGLAGVAVCVLLFFICCCTGCGSC  1206

Query  1246  GCCSCGSCC-KFDEDDSEPVLKGVKLH  1271
                 CGSCC ++       V+  +  H
Sbjct  1207  CFRKCGSCCDEYGGHQDSIVIHNISAH  1233


>A3EX94.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1352

 Score = 499 bits (1284),  Expect = 5e-153, Method: Compositional matrix adjust.
 Identities = 307/754 (41%), Positives = 430/754 (57%), Gaps = 37/754 (5%)

Query  537   KCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS  596
             KCV+++  G+TG GV        +  Q+F  D  D               + PC    VS
Sbjct  607   KCVDYSLYGVTGRGVFQNCTAVGVKQQRFVYDSFDNLVGYYSDDG-NYYCVRPCVSVPVS  665

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNV-FQTRAGCLIGAEH  655
             VI     ++N  A L+  V C  V   +          +    SN+  QT  GC+IG   
Sbjct  666   VIY--DKSTNLHATLFGSVACEHVTTMMSQFSRLTQSNLRRRDSNIPLQTAVGCVIGLS-  722

Query  656   VNNSY---ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSI  712
              NNS    +C +P+G  +CA     T     A S    +++ YT  +     +  S  + 
Sbjct  723   -NNSLVVSDCKLPLGQSLCAVPPVSTFRSYSA-SQFQLAVLNYTSPI-VVTPINSSGFTA  779

Query  713   AIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAV  772
             AIPTNF+ SVT E +  S+ K +VDC  Y+C   T C  LL++YG FC+++N+AL G  +
Sbjct  780   AIPTNFSFSVTQEYIETSIQKVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANL  839

Query  773   EQDKNTQEVFAQVKQIY-KTPPIKDFGGFNFSQILPDP----SKPSKRSFIEDLLFNKVT  827
              QD++   +++ +K    +T      G FN + +L  P    S  S RS IEDLLF+KVT
Sbjct  840   RQDESVYSLYSNIKTTSTQTLEYGLNGDFNLT-LLQVPQIGGSSSSYRSAIEDLLFDKVT  898

Query  828   LADAGFIKQYGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
             +AD G+++ Y DC+  G  +ARDLICAQ  +G  VLPPL    M A YTS+LL     +G
Sbjct  899   IADPGYMQGYDDCMKQGPQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAG  958

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
             WT G  +   IPFA  M YR NG+G+TQ VL ENQKLIAN+FN A+G +Q   +++  A 
Sbjct  959   WTAGLSSFAAIPFAQSMFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAF  1018

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              K+QD VN NAQAL+ L  +LS+ FGAISS ++DIL+RLD VE + QIDRLI GRL SL 
Sbjct  1019  SKVQDAVNANAQALSKLASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLISLN  1078

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
              +V+QQL+R+     SA LA+ K++ECV  QSKR  FCG G H++SF  +AP+G  F HV
Sbjct  1079  AFVSQQLVRSETAARSAQLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHV  1138

Query  1066  TYVPAQEKNFTTAPAICHDGKAHF---PREGVFVSN-------GTHWFVTQRNFYEPQII  1115
              YVP    N T A  +C++        P +G F++N        T W+ T  +FY+P+ I
Sbjct  1139  GYVPTNYTNVTAAYGLCNNNNPPLCIAPIDGYFITNQTTTYSVDTEWYYTGSSFYKPEPI  1198

Query  1116  TTDNT-FVSGNCDVVIGIVNNTVYDPL---QPELDSFKEELDKYFKNHTSPDVDLGDISG  1171
             T  N+ +VS   DV    + N +  PL     ++D FK+EL+++FKN TS   +  +IS 
Sbjct  1199  TQANSRYVSS--DVKFDKLENNLPPPLLENSTDVD-FKDELEEFFKNVTSHGPNFAEISK  1255

Query  1172  INASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVT  1231
             IN +++++  E+  L EV K LN+S IDL+ELG Y  Y KWPWY+WLGFIAGL+A+++  
Sbjct  1256  INTTLLDLSDEMAMLQEVVKQLNDSYIDLKELGNYTYYNKWPWYVWLGFIAGLVALLLCV  1315

Query  1232  IMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPV  1264
               L C T C +   G   C +CC  ++E D E +
Sbjct  1316  FFLLCCTGCGTSCLGKMKCKNCCDSYEEYDVEKI  1349


 Score = 95.5 bits (236),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 62/202 (31%), Positives = 92/202 (46%), Gaps = 15/202 (7%)

Query  232  GINITRFQTL---------LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNEN  282
            G N+ RF TL           + RS+ +  +    W    AA+YV  L   T+LL ++ +
Sbjct  280  GGNMFRFATLPVYEGIKYYTVIPRSFRSKANKREAW----AAFYVYKLHQLTYLLDFSVD  335

Query  283  GTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFGEVF  342
            G I  A+DC  D LS+  C+  SF V+ G+Y  S++    T + +  PN T  C F  + 
Sbjct  336  GYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSVSSYEASATGTFIEQPNATE-CDFSPML  394

Query  343  NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI  402
                   VY + R   SNC  + + L +  +   F C G+SP  +   C++ +  D F  
Sbjct  395  TGVA-PQVYNFKRLVFSNCNYNLTKLLSLFAVDEFSCNGISPDSIARGCYSTLTVDYFAY  453

Query  403  RGDEVRQIAPGQTGKIADYNYK  424
                   I PG  G I  YNYK
Sbjct  454  PLSMKSYIRPGSAGNIPLYNYK  475


>P25192.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 485 bits (1249),  Expect = 5e-148, Method: Compositional matrix adjust.
 Identities = 286/759 (38%), Positives = 418/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNS--YECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSAVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E + +S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQISSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + GL  +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGLAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>Q9QAQ8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 485 bits (1249),  Expect = 5e-148, Method: Compositional matrix adjust.
 Identities = 286/759 (38%), Positives = 417/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+G IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-  1261

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1262  SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 93.6 bits (231),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>Q91A26.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 484 bits (1247),  Expect = 8e-148, Method: Compositional matrix adjust.
 Identities = 286/759 (38%), Positives = 417/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+G IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPYFKEELDQWFKNQTSVAPDL-  1261

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1262  SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQAYSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>Q8V436.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 484 bits (1247),  Expect = 1e-147, Method: Compositional matrix adjust.
 Identities = 285/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+G IQ+   +T SAL K+Q VVN NA+ LN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALGAIQEGFDATNSALVKIQAVVNANAETLNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC-HDGKAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C   G+   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGGRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-  1261

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1262  SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 93.6 bits (231),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>Q9QAR5.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 484 bits (1245),  Expect = 2e-147, Method: Compositional matrix adjust.
 Identities = 286/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L+++  C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNFKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRSITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL++ 
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSEN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+G IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALGAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAPDL-  1261

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1262  SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 93.6 bits (231),  Expect = 7e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSALTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>P25194.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 481 bits (1238),  Expect = 2e-146, Method: Compositional matrix adjust.
 Identities = 285/759 (38%), Positives = 415/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+  
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 92.4 bits (228),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 52/181 (29%), Positives = 85/181 (47%), Gaps = 2/181 (1%)

Query  258  WTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSN  317
            ++A    Y+V  L  + +LL +N++G I +AVDC  D +SE KC   S     G+Y+ + 
Sbjct  253  YSAMTLEYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKTLSIAPSTGVYELNG  312

Query  318  FRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFST  376
            + VQP   +  R PN+ + C      N     S   W RK  SNC  + S L +     +
Sbjct  313  YTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADS  371

Query  377  FKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAW  436
            F C  +   K+  +CF+++  D F I       +  G  G +  +NY++      C + +
Sbjct  372  FTCNNIEAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTAASCQLYY  431

Query  437  N  437
            N
Sbjct  432  N  432


>P25191.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 479 bits (1232),  Expect = 2e-145, Method: Compositional matrix adjust.
 Identities = 284/759 (37%), Positives = 414/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNAPYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+  
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C        + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAANYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 94.0 bits (232),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVLPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSCLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>P15777.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 478 bits (1229),  Expect = 4e-145, Method: Compositional matrix adjust.
 Identities = 285/759 (38%), Positives = 416/759 (55%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +      T      NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTTFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FSQIL----PD  808
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN     FS +L     D
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSD  906

Query  809   PSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+  
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++    +    AA+ +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPLS----AAVGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 95.1 bits (235),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 58/195 (30%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   SS  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVLPLTCSSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>P25190.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 477 bits (1228),  Expect = 4e-145, Method: Compositional matrix adjust.
 Identities = 281/762 (37%), Positives = 415/762 (54%), Gaps = 47/762 (6%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E+N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEANATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNS--YECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++   S    CD+ +G+G C  Y T+    R  R++ +     Y  +     +
Sbjct  731   LGCVVNADNSTASAVQTCDLTVGSGYCVDYSTKR---RSVRAITT----GYRFTNFEPFT  783

Query  705   VAYSNNS---------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQ  755
             V   N+S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++
Sbjct  784   VNSVNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDCAACKSQLVE  843

Query  756   YGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP-----  809
             YGSFC  +N  LT +    D    +V  + +  +  +  +KD   FN   I   P     
Sbjct  844   YGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCL  903

Query  810   ----SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLL  865
                 +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL
Sbjct  904   GSECNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLL  963

Query  866   TDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIAN  925
             ++  I+ YT A  + ++   W+  AG    +PF + + YR NGIGVT +VL +NQKLIAN
Sbjct  964   SENQISGYTLAATSASLFPPWSAAAG----VPFYLNVQYRINGIGVTMDVLSQNQKLIAN  1019

Query  926   QFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLD  985
              FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD
Sbjct  1020  AFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLD  1079

Query  986   KVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGK  1045
              +EA+ QIDRLI GR  +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG 
Sbjct  1080  ALEAQRQIDRLINGRFTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGN  1139

Query  1046  GYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFV  1104
             G H++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  
Sbjct  1140  GNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMF  1199

Query  1105  TQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDV  1164
             T   +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   
Sbjct  1200  TGSGYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLPDFKEELDQWFKNQTSVAP  1259

Query  1165  DLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGL  1224
             DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G 
Sbjct  1260  DLS-LDYINVTFLDLQDEMNRLQEAIKLLNQSYINLKDIGTYEYYVKWPWYVWL--LIGF  1316

Query  1225  IAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
               + M+ ++                CG CC       E V+K
Sbjct  1317  AGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQELVIK  1358


 Score = 94.0 bits (232),  Expect = 6e-18, Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   +S  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVMPLTCNSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>P25193.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1363

 Score = 474 bits (1219),  Expect = 9e-144, Method: Compositional matrix adjust.
 Identities = 282/759 (37%), Positives = 412/759 (54%), Gaps = 41/759 (5%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+TG G+  E N  +   +Q    D        RD  T     
Sbjct  621   KSNTDIILGVCVNYDLYGITGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYLTNRTFM  680

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V     + QL P         N F + 
Sbjct  681   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNTLSRQLQPI--------NYFDSY  730

Query  647   AGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A++  +S    CD+ +G+G C  Y T+    RR+R   +             NS
Sbjct  731   LGCVVNADNSTSSVVQTCDLTVGSGYCVDYSTK----RRSRRAITTGYRFTNFEPFTVNS  786

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC+ ++CGD   C + L++YGS
Sbjct  787   VNDSLEPVGGLYEIQIPSEFTIGNMEEFIQTSSPKVTIDCSAFVCGDYAACKSQLVEYGS  846

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP--------  809
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN   I   P        
Sbjct  847   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSA  906

Query  810   -SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              +K S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ VLPPLL+  
Sbjct  907   CNKVSSRSAIEDLLFSKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYNGIKVLPPLLSVN  966

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++    +    AA+ +PF + + YR NGIGVT +VL +NQKLIAN FN
Sbjct  967   QISGYTLAATSASLFPPLS----AAVGVPFYLNVQYRINGIGVTMDVLSQNQKLIANAFN  1022

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAISS L +ILSRLD +E
Sbjct  1023  NALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISSSLQEILSRLDALE  1082

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             A+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1083  AQAQIDRLINGRLTALNVYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1142

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1143  IISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDRGIAPKSGYFVNVNNTWMFTGS  1202

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V      + + +   P L  FKEELD++FKN TS   DL 
Sbjct  1203  GYYYPEPITGNNVVVMSTCAVNYTKAPDVMLNISTPNLHDFKEELDQWFKNQTSVAPDLS  1262

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAI  1227
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL  + G   +
Sbjct  1263  -LDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL--LIGFAGV  1319

Query  1228  VMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
              M+ ++                CG CC       E V+K
Sbjct  1320  AMLVLLFFICCCTGCGTSCFKICGGCCDDYTGHQELVIK  1358


 Score = 95.1 bits (235),  Expect = 3e-18, Method: Compositional matrix adjust.
 Identities = 58/195 (30%), Positives = 90/195 (46%), Gaps = 5/195 (3%)

Query  244  LHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTL  303
            L   Y+ P   SS  T     Y+V  L  + +LL +N++G I +AVDC  D +SE KC  
Sbjct  242  LSHYYVLPLTCSSAMTL---EYWVTPLTSKQYLLAFNQDGVIFNAVDCKSDFMSEIKCKT  298

Query  304  KSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCV  362
             S     G+Y+ + + VQP   +  R PN+ + C      N     S   W RK  SNC 
Sbjct  299  LSIAPSTGVYELNGYTVQPIADVYRRIPNLPD-CNIEAWLNDKSVPSPLNWERKTFSNCN  357

Query  363  ADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYN  422
             + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  +N
Sbjct  358  FNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFN  417

Query  423  YKLPDDFTGCVIAWN  437
            Y++    T C + +N
Sbjct  418  YRIDTTATSCQLYYN  432


>Q0ZME7.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1351

 Score = 467 bits (1201),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 275/750 (37%), Positives = 410/750 (55%), Gaps = 56/750 (7%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +    CVN++  G+TG G+  E +  +   +Q    D        +D  T +   I 
Sbjct  611   NTEISTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTIL  670

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
             PC  G VS        S+  A+LY+++ C+ V   I           + +    F +  G
Sbjct  671   PCYSGRVSA--AFYQNSSSPALLYRNLKCSYVLNNIS----------FISQPFYFDSYLG  718

Query  649   CLIGAEHVNNSYE---CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSV  705
             C++ A ++  SY    CD+ +G+G C  Y   + S R+ R ++S     Y        +V
Sbjct  719   CVLNAVNLT-SYSVSSCDLRMGSGFCIDYALPS-SRRKRRGISS----PYRFVTFEPFNV  772

Query  706   AYSNNS---------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY  756
             ++ N+S         I IPTNFTI+   E +  S  K ++DC+ ++C +   C +LL +Y
Sbjct  773   SFVNDSVETVGGLFEIQIPTNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEY  832

Query  757   GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQILP---  807
             G+FC  +N  L  +    D    +V   + Q         T    D    +F  +L    
Sbjct  833   GTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLG  892

Query  808   DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTD  867
                  S RS +EDLLFNKV L+D GF++ Y +C G    RDL+C Q FNG+ VLPP+L++
Sbjct  893   SQCGSSSRSLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSE  952

Query  868   EMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQF  927
               I+ YT+A     +   W+  AG    +PF++ + YR NG+GVT +VL +NQKLIAN F
Sbjct  953   TQISGYTTAATVAAMFPPWSAAAG----VPFSLNVQYRINGLGVTMDVLNKNQKLIANAF  1008

Query  928   NSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV  987
             N A+  IQ+  ++T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD +
Sbjct  1009  NKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNL  1068

Query  988   EAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGY  1047
             EA+VQIDRLI GRL +L  YV+QQL     I+A A+ A  K++ECV  QS R++FCG G 
Sbjct  1069  EAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGN  1128

Query  1048  HLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQ  1106
             H++S  Q+AP+G++F+H +Y P   K    +P +C  G +   P++G F+     W  T 
Sbjct  1129  HILSLVQNAPYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTG  1188

Query  1107  RNFYEPQIITTDNTFVSGNCDVVIG-----IVNNTVYDPLQPELDSFKEELDKYFKNHTS  1161
              ++Y P+ I+  N     +C V         +NN++     P L  F+ EL  +FKNHTS
Sbjct  1189  SSYYYPEPISDKNVVFMNSCSVNFTKAPFIYLNNSI-----PNLSDFEAELSLWFKNHTS  1243

Query  1162  PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFI  1221
                +L   S INA+ +++  E++ + E  K+LN S I+L+E+G YE Y+KWPWYIWL  +
Sbjct  1244  IAPNLTFNSHINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVKWPWYIWLLIV  1303

Query  1222  AGLIAIVMVTIMLCCMTSCCS-CLKGCCSC  1250
                I  +M+   +CC T C S C   C +C
Sbjct  1304  ILFIIFLMILFFICCCTGCGSACFSKCHNC  1333


 Score = 92.4 bits (228),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (48%), Gaps = 2/169 (1%)

Query  265  YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE  324
            Y+V  L  R +LL ++E+G IT+AVDC+   LSE +C  +SF    G+Y  S F V+P  
Sbjct  256  YWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVA  315

Query  325  SIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS  383
            ++  R PN+ + C      N     S   W R+  SNC  + S L       +F C  + 
Sbjct  316  TVYRRIPNLPD-CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLD  374

Query  384  PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             +K+   CF ++  D F I       +  G +G +   NYK+    + C
Sbjct  375  KSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSC  423


>Q14EB0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1351

 Score = 466 bits (1198),  Expect = 7e-141, Method: Compositional matrix adjust.
 Identities = 273/742 (37%), Positives = 406/742 (55%), Gaps = 56/742 (8%)

Query  538   CVNFNFNGLTGTGVLTESNKKFLP-FQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVS  596
             CVN++  G+TG G+  E +  +   +Q    D        +D  T +   I PC  G VS
Sbjct  619   CVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVS  678

Query  597   VITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHV  656
                     S+  A+LY+++ C+ V   I           + +    F +  GC++ A ++
Sbjct  679   A--AFYQNSSSPALLYRNLKCSYVLNNIS----------FISQPFYFDSYLGCVLNAVNL  726

Query  657   NNSYE---CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNS--  711
               SY    CD+ +G+G C  Y   + S R+ R ++S     Y        +V++ N+S  
Sbjct  727   T-SYSVSSCDLRMGSGFCIDYALPS-SRRKRRGISS----PYRFVTFEPFNVSFVNDSVE  780

Query  712   -------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLN  764
                    I IPTNFTI+   E +  S  K ++DC+ ++C +   C +LL +YG+FC  +N
Sbjct  781   TVGGLFEIQIPTNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNIN  840

Query  765   RALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQILP---DPSKPSKR  815
               L  +    D    +V   + Q         T    D    +F  +L         S R
Sbjct  841   SILNEVNDLLDITQLQVANALMQGVTLSSNLNTNLHSDVDNIDFKSLLGCLGSQCGSSSR  900

Query  816   SFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTS  875
             S +EDLLFNKV L+D GF++ Y +C G    RDL+C Q FNG+ VLPP+L++  I+ YT+
Sbjct  901   SLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTT  960

Query  876   ALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQ  935
             A     +   W+  AG    +PF++ + YR NG+GVT +VL +NQKLIAN FN A+  IQ
Sbjct  961   AATVAAMFPPWSAAAG----VPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQ  1016

Query  936   DSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDR  995
             +  ++T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD +EA+VQIDR
Sbjct  1017  NGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDR  1076

Query  996   LITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQS  1055
             LI GRL +L  YV+QQL     I+A A+ A  K++ECV  QS R++FCG G H++S  Q+
Sbjct  1077  LINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQN  1136

Query  1056  APHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQRNFYEPQI  1114
             AP+G++F+H +Y P   K    +P +C  G +   P++G F+     W  T  ++Y P+ 
Sbjct  1137  APYGLLFIHFSYKPTSFKTVLVSPGLCLSGDRGIAPKQGYFIKQNDSWMFTGSSYYYPEP  1196

Query  1115  ITTDNTFVSGNCDVVIG-----IVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDI  1169
             I+  N     +C V         +NN++     P L  F+ E   +FKNHTS   +L   
Sbjct  1197  ISDKNVVFMNSCSVNFTKAPFIYLNNSI-----PNLSDFEAEFSLWFKNHTSIAPNLTFN  1251

Query  1170  SGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVM  1229
             S INA+ +++  E++ + E  K+LN S I+L+E+G YE Y+KWPWYIWL  +   I  +M
Sbjct  1252  SHINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVKWPWYIWLLIVILFIIFLM  1311

Query  1230  VTIMLCCMTSCCS-CLKGCCSC  1250
             +   +CC T C S C   C +C
Sbjct  1312  ILFFICCCTGCGSACFSKCHNC  1333


 Score = 92.4 bits (228),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (48%), Gaps = 2/169 (1%)

Query  265  YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE  324
            Y+V  L  R +LL ++E+G IT+AVDC+   LSE +C  +SF    G+Y  S F V+P  
Sbjct  256  YWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSGFTVKPVA  315

Query  325  SIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS  383
            ++  R PN+ + C      N     S   W R+  SNC  + S L       +F C  + 
Sbjct  316  TVYRRIPNLPD-CDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLD  374

Query  384  PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             +K+   CF ++  D F I       +  G +G +   NYK+    + C
Sbjct  375  KSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSC  423


>P36334.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1353

 Score = 464 bits (1195),  Expect = 2e-140, Method: Compositional matrix adjust.
 Identities = 285/760 (38%), Positives = 410/760 (54%), Gaps = 43/760 (6%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             K +T+++   CVN++  G+ G G+  E N  +   +Q    D        RD        
Sbjct  611   KANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYIINRTFM  670

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I  C  G VS        S++ A+L++++ C  V       QL P         N F + 
Sbjct  671   IRSCYSGRVSAAFHAN--SSEPALLFRNIKCNYVFNNSLTRQLQPI--------NYFDSY  720

Query  647   AGCLIGAEHVN--NSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC++ A +    +   CD+ +G+G C  Y       RR+R   +             NS
Sbjct  721   LGCVVNAYNSTAISVQTCDLTVGSGYCVDYSKN----RRSRGAITTGYRFTNFEPFTVNS  776

Query  705   VAYSNN------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGS  758
             V  S         I IP+ FTI    E +  S  K ++DC  ++CGD   C + L++YGS
Sbjct  777   VNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACKSQLVEYGS  836

Query  759   FCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPDP--------  809
             FC  +N  LT +    D    +V  + +  +  +  +KD   FN   I   P        
Sbjct  837   FCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSE  896

Query  810   -SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDE  868
              SK S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q + G+ VLPPLL++ 
Sbjct  897   CSKASSRSAIEDLLFDKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSEN  956

Query  869   MIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFN  928
              I+ YT A  + ++   WT  AG    +PF + + YR NG+GVT +VL +NQKLIAN FN
Sbjct  957   QISGYTLAATSASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQNQKLIANAFN  1012

Query  929   SAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE  988
             +A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +ILSRLD +E
Sbjct  1013  NALYAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALE  1072

Query  989   AEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYH  1048
             AE QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R++FCG G H
Sbjct  1073  AEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNH  1132

Query  1049  LMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNGTHWFVTQR  1107
             ++S  Q+AP+G+ F+H +YVP +      +P +C  G +   P+ G FV+    W  T  
Sbjct  1133  IISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAGDRGIAPKSGYFVNVNNTWMYTGS  1192

Query  1108  NFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLG  1167
              +Y P+ IT +N  V   C V        + +   P L  FKEELD++FKN TS   DL 
Sbjct  1193  GYYYPEPITENNVVVMSTCAVNYTKAPYVMLNTSIPNLPDFKEELDQWFKNQTSVAPDLS  1252

Query  1168  DISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGF-IAGLIA  1226
              +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL   +AG+  
Sbjct  1253  -LDYINVTFLDLQVEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWLLICLAGVAM  1311

Query  1227  IVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
             +V++  + CC     SC K    CG CC       E V+K
Sbjct  1312  LVLLFFICCCTGCGTSCFK---KCGGCCDDYTGYQELVIK  1348


 Score = 95.9 bits (237),  Expect = 2e-18, Method: Compositional matrix adjust.
 Identities = 59/197 (30%), Positives = 92/197 (47%), Gaps = 5/197 (3%)

Query  242  LALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKC  301
            +AL   Y+ P   +S  T     Y+V  L  R +LL +N++G I +A DC  D +SE KC
Sbjct  244  MALSHYYVMPLTCNSKLTL---EYWVTPLTSRQYLLAFNQDGIIFNAEDCMSDFMSEIKC  300

Query  302  TLKSFTVEKGIYQTSNFRVQPTESIVRF-PNITNLCPFGEVFNATRFASVYAWNRKRISN  360
              +S     G+Y+ + + VQP   + R  PN+ N C      N     S   W RK  SN
Sbjct  301  KTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPN-CNIEAWLNDKSVPSPLNWERKTFSN  359

Query  361  CVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIAD  420
            C  + S L +     +F C  +   K+  +CF+++  D F I       +  G  G +  
Sbjct  360  CNFNMSSLMSFIQADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQS  419

Query  421  YNYKLPDDFTGCVIAWN  437
            +NY++    T C + +N
Sbjct  420  FNYRIDTTATSCQLYYN  436


>P11224.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1324

 Score = 459 bits (1182),  Expect = 7e-139, Method: Compositional matrix adjust.
 Identities = 277/760 (36%), Positives = 414/760 (54%), Gaps = 62/760 (8%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +V   CV ++  G+TG GV  E    +   +Q    D+    +  RD  T +   I 
Sbjct  572   NTEVVTGICVKYDLYGITGQGVFKEVKADYYNSWQTLLYDVNGNLNGFRDLTTNKTYTIR  631

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
              C  G VS        + + A+LY+++NC+ V     + +  P         N F +  G
Sbjct  632   SCYSGRVSAAF--HKDAPEPALLYRNINCSYVFSNNISREENPL--------NYFDSYLG  681

Query  649   CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVA  706
             C++ A++  +     CD+ +GAG+C  Y   + S R  RSV++     Y ++     +  
Sbjct  682   CVVNADNRTDEALPNCDLRMGAGLCVDY---SKSRRAHRSVST----GYRLTTFEPYTPM  734

Query  707   YSNNSIA---------IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYG  757
               N+S+          IPTNFTI    E +     K ++DC  ++CGD+T C   L++YG
Sbjct  735   LVNDSVQSVDGLYEMQIPTNFTIGHHEEFIQTRSPKVTIDCAAFVCGDNTACRQQLVEYG  794

Query  758   SFCTQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP-  807
             SFC  +N  L  +    D    +V + + Q      + P     PI D    NFS +L  
Sbjct  795   SFCVNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGC  851

Query  808   ----------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNG  857
                        PS    RS IEDLLF+KV L+D GF++ Y +C G    RDL+C Q FNG
Sbjct  852   IGSTCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNG  911

Query  858   LTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLY  917
             + VLPP+L++  I+ YT+   A  +   W+  AG    +PF++ + YR NG+GVT NVL 
Sbjct  912   IKVLPPVLSESQISGYTTGATAAAMFPPWSAAAG----VPFSLSVQYRINGLGVTMNVLS  967

Query  918   ENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
             ENQK+IA+ FN+A+G IQD   +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L
Sbjct  968   ENQKMIASAFNNALGAIQDGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASL  1027

Query  978   NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS  1037
              +IL+RL+ VEA+ QIDRLI GRL +L  Y+++QL  +  I+ SA  A  K++ECV  Q+
Sbjct  1028  QEILTRLEAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKVSAAQAIEKVNECVKSQT  1087

Query  1038  KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFV  1096
              R++FCG G H++S  Q+AP+G+ F+H +YVP        +P +C  G +   P+ G FV
Sbjct  1088  TRINFCGNGNHILSLVQNAPYGLYFIHFSYVPISFTTANVSPGLCISGDRGLAPKAGYFV  1147

Query  1097  SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYF  1156
              +   W  T  ++Y P+ IT  N+ +  +C V          +   P    FKEELDK+F
Sbjct  1148  QDDGEWKFTGSSYYYPEPITDKNSVIMSSCAVNYTKAPEVFLNTSIPNPPDFKEELDKWF  1207

Query  1157  KNHTS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW  1214
             KN TS  PD+ L D   +N +++++  E++R+ +  K LNES I+L+E+G YE Y+KWPW
Sbjct  1208  KNQTSIAPDLSL-DFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPW  1266

Query  1215  YIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC  1254
             Y+WL  + GL  + +  ++                CG+CC
Sbjct  1267  YVWL--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCC  1304


 Score = 85.1 bits (209),  Expect = 2e-15, Method: Compositional matrix adjust.
 Identities = 56/183 (31%), Positives = 80/183 (44%), Gaps = 7/183 (4%)

Query  259  TAG---AAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT  315
            TAG   A  Y+V  L  R +L  +N+ G IT AVDCA    SE KC  +S     G+Y+ 
Sbjct  249  TAGSTFAPRYWVTPLVKRQYLFNFNQKGVITSAVDCASSYTSEIKCKTQSMLPSTGVYEL  308

Query  316  SNFRVQPTESIVRFPNITNL--CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSAS  373
            S + VQP   + R   + NL  C   E   A    S   W RK   NC  + S L     
Sbjct  309  SGYTVQPVGVVYR--RVANLPACNIEEWLTARSVPSPLNWERKTFQNCNFNLSSLLRYVQ  366

Query  374  FSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCV  433
              +  C  +  +K+   CF ++  D F +       +  G +G +   NYK+    T C 
Sbjct  367  AESLFCNNIDASKVYGRCFGSISVDKFAVPRSRQVDLQLGNSGFLQTANYKIDTAATSCQ  426

Query  434  IAW  436
            + +
Sbjct  427  LHY  429


>Q8JSP8.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1349

 Score = 459 bits (1181),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 277/753 (37%), Positives = 411/753 (55%), Gaps = 58/753 (8%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             + +TN+  + CVN++  G+TG G+L E N  +   +Q    D +      RD  +     
Sbjct  607   QGNTNITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFL  666

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEV--PVAIHADQLTPTWRVYSTGSNVFQ  644
             I  C  G VS +      S++ A++++++ C+ V     +   QL           N F 
Sbjct  667   IRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFNYTILRQIQLV----------NYFD  714

Query  645   TRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAE  702
             +  GC++ A +   S    CD+ +G+G C  Y T   S R           ++T      
Sbjct  715   SYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRSRR-----------SFTTGYRFT  763

Query  703   NSVAYSNN-------------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTEC  749
             N   ++ N              I IP+ FTI    E +  S  K ++DC  ++CGD   C
Sbjct  764   NFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTSSPKVTIDCATFVCGDYAAC  823

Query  750   SNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFN-----FS  803
                L +YGSFC  +N  L  +    D    +V  + +  +  +  IKD   FN     FS
Sbjct  824   RQQLAEYGSFCENINAILIEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFS  883

Query  804   QIL----PDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLT  859
              +L     + ++ S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ 
Sbjct  884   SVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIK  943

Query  860   VLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN  919
             VLPPLL++  I+ YTSA  A ++   WT  AG    +PF + + YR NG+GVT +VL +N
Sbjct  944   VLPPLLSENQISGYTSAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQN  999

Query  920   QKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND  979
             QKLIA+ FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +
Sbjct  1000  QKLIASAFNNALDSIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQE  1059

Query  980   ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR  1039
             ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R
Sbjct  1060  ILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSR  1119

Query  1040  VDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSN  1098
             ++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G     P+ G F++ 
Sbjct  1120  INFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINV  1179

Query  1099  GTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKN  1158
                W  T   +Y P+ IT +N  V   C V      + + +   P L  FKEEL ++FKN
Sbjct  1180  NNSWMFTGSGYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKN  1239

Query  1159  HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL  1218
              +S   DL     IN + +++Q E++RL E  K LN S I+L+++G YE Y+KWPWY+WL
Sbjct  1240  QSSLAPDL-SFDYINVTFLDLQDEMNRLQEAIKVLNHSYINLKDIGTYEYYVKWPWYVWL  1298

Query  1219  GF-IAGLIAIVMVTIMLCCMTSCCSCLKGCCSC  1250
                +AG++ +V++  + CC     SC K C  C
Sbjct  1299  LICLAGVVMLVLLFFICCCTGCGTSCFKKCGGC  1331


 Score = 94.0 bits (232),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 52/175 (30%), Positives = 87/175 (50%), Gaps = 2/175 (1%)

Query  259  TAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNF  318
            +A +  Y+V  L  R FLL ++++G +  AVDCA D +SE  C   S T   G+Y+ + +
Sbjct  254  SALSLEYWVTPLTTRQFLLAFDQDGVLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGY  313

Query  319  RVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTF  377
             VQP  ++  R P++ N C      N+   +S   W RK  SNC  +   L +     +F
Sbjct  314  TVQPVATVYRRIPDLPN-CDIEAWLNSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSF  372

Query  378  KCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             C  +  ++L  +CF ++  D F I       +  G++G +  +NYK+    + C
Sbjct  373  GCNNIDASRLYGMCFGSITIDKFAIPNSRKVDLQVGKSGYLQSFNYKIDTAVSSC  427


>Q8BB25.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1349

 Score = 459 bits (1180),  Expect = 2e-138, Method: Compositional matrix adjust.
 Identities = 274/768 (36%), Positives = 408/768 (53%), Gaps = 59/768 (8%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             + +T +  + CVN++  G+TG G+L E N  +   +Q    D +      RD  +     
Sbjct  607   QGNTIITTDVCVNYDLYGITGQGILIEVNATYYNSWQNLLYDSSGNLYGFRDYLSNRTFL  666

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEV--PVAIHADQLTPTWRVYSTGSNVFQ  644
             I  C  G VS +      S++ A++++++ C+ V     +   QL           N F 
Sbjct  667   IRSCYSGRVSAVFHAN--SSEPALMFRNLKCSHVFNNTILRQIQLV----------NYFD  714

Query  645   TRAGCLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAE  702
             +  GC++ A +   S    CD+ +G+G C  Y T   S R           ++T      
Sbjct  715   SYLGCVVNAYNNTASAVSTCDLTVGSGYCVDYVTALRSRR-----------SFTTGYRFT  763

Query  703   NSVAYSNN-------------SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTEC  749
             N   ++ N              I IP+ FTI    E +     K ++DC  ++CGD   C
Sbjct  764   NFEPFAANLVNDSIEPVGGLYEIQIPSEFTIGNLEEFIQTRSPKVTIDCATFVCGDYAAC  823

Query  750   SNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF-AQVKQIYKTPPIKDFGGFNFSQILPD  808
                L +YGSFC  +N  LT +    D    +V  + +  +  +  IKD   FN   I   
Sbjct  824   RQQLAEYGSFCENINAILTEVNELLDTTQLQVANSLMNGVTLSTKIKDGINFNVDDINFS  883

Query  809   P---------SKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLT  859
             P         ++ S RS IEDLLF+KV L+D GF++ Y +C G    RDLIC Q +NG+ 
Sbjct  884   PVLGCLGSECNRASTRSAIEDLLFDKVKLSDVGFVQAYNNCTGGAEIRDLICVQSYNGIK  943

Query  860   VLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYEN  919
             VLPPLL++  I+ YT A  A ++   WT  AG    +PF + + YR NG+GVT +VL +N
Sbjct  944   VLPPLLSENQISGYTLAATAASLFPPWTAAAG----VPFYLNVQYRINGLGVTMDVLSQN  999

Query  920   QKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLND  979
             QKLIA+ FN+A+  IQ+   +T SAL K+Q VVN NA+ALN L++QLS+ FGAIS+ L +
Sbjct  1000  QKLIASAFNNALDAIQEGFDATNSALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQE  1059

Query  980   ILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKR  1039
             ILSRLD +EA+ QIDRLI GRL +L  YV+QQL  +  ++ SA  A  K++ECV  QS R
Sbjct  1060  ILSRLDALEAKAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAIEKVNECVKSQSSR  1119

Query  1040  VDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSN  1098
             ++FCG G H++S  Q+AP+G+ F+H +YVP +      +P +C  G     P+ G F++ 
Sbjct  1120  INFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTAKVSPGLCIAGDIGISPKSGYFINV  1179

Query  1099  GTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKN  1158
                W  T  ++Y P+ IT +N  V   C V      + + +   P L  FKEEL ++FKN
Sbjct  1180  NNSWMFTGSSYYYPEPITQNNVVVMSTCAVNYTKAPDLMLNTSTPNLPDFKEELYQWFKN  1239

Query  1159  HTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWL  1218
              +S   DL  +  IN + +++Q E++RL E  K LN+S I+L+++G YE Y+KWPWY+WL
Sbjct  1240  QSSVAPDL-SLDYINVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWL  1298

Query  1219  GFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLK  1266
               + GL  + M+ ++                CG CC       E V+K
Sbjct  1299  --LIGLAGVAMLVLLFFICCCTGCGTSCFKKCGGCCDDYTGHQEFVIK  1344


 Score = 94.4 bits (233),  Expect = 5e-18, Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 178/450 (40%), Gaps = 80/450 (18%)

Query  8    LPLVSSQCVNLT----TRTQLPPAYTNS-FTRGVYYP--DKVFRSSVLHSTQDLFLPFFS  60
            +P +SS+ V++T    T   L   Y N+      YYP     FR+  L  T+ L      
Sbjct  33   VPSISSEVVDVTNGLGTFYVLDRVYLNTTLLLNGYYPISGATFRNMALKGTRLL------  86

Query  61   NVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIV  120
            +  WF    +S             PFNDG+ FA  + S   +  +  +   + T     V
Sbjct  87   STLWFKPPFLS-------------PFNDGI-FAKVKNSRFSKDGVIYSEFPAITIGSTFV  132

Query  121  NNATNVV-----------------IKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSA  163
            N + ++V                 I VC++  C  P      H N  +     +   +  
Sbjct  133  NTSYSIVVEPHTSLINGNLQGLLQISVCQYTMCEYPH--TICHPNLGNQRIELWHYDTDV  190

Query  164  NNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSAL  223
             +C +    + F  D+      F   +E       G F  Y   T          GF   
Sbjct  191  VSCLYR---RNFTYDVNADYLYFHFYQE------GGTFYAYFTDT----------GF-VT  230

Query  224  EPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENG  283
            + L  L +G  ++ +         Y+ P   +S   A +  Y+V  L  R FLL ++++G
Sbjct  231  KFLFKLYLGTVLSHY---------YVMPLTCNS---ALSLEYWVTPLTTRQFLLAFDQDG  278

Query  284  TITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGEVF  342
             +  AVDCA D +SE  C   S T   G+Y+ + + VQP  ++  R P++ N C      
Sbjct  279  VLYHAVDCASDFMSEIMCKTSSITPPTGVYELNGYTVQPVATVYRRIPDLPN-CDIEAWL  337

Query  343  NATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVI  402
            N+   +S   W RK  SNC  +   L +     +F C  +  ++L  +CF ++  D F I
Sbjct  338  NSKTVSSPLNWERKIFSNCNFNMGRLMSFIQADSFGCNNIDASRLYGMCFGSITIDKFAI  397

Query  403  RGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
                   +  G++G +  +NYK+    + C
Sbjct  398  PNSRKVDLQVGKSGYLQSFNYKIDTAVSSC  427


>Q02385.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1376

 Score = 459 bits (1180),  Expect = 3e-138, Method: Compositional matrix adjust.
 Identities = 282/757 (37%), Positives = 411/757 (54%), Gaps = 56/757 (7%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +    CV ++  G+TG GV  E    +   +Q    D+    +  RD  T +   I 
Sbjct  624   NTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIR  683

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
              C  G VS        + + A+LY+++NC+ V     + +  P         N F +  G
Sbjct  684   SCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREENPL--------NYFDSYLG  733

Query  649   CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYT----MSLGAE  702
             C++ A++  +     CD+ +GAG+C  Y       RRAR   S      T    M +   
Sbjct  734   CVVNADNRPDEALPNCDLRMGAGLCVDYSKS----RRARRSVSTGYRLTTFEPYMPMLVN  789

Query  703   NSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFC  760
             +SV        + IPTNFTI    E + +   K ++DC  ++CGD+  C   L++YGSFC
Sbjct  790   DSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQLVEYGSFC  849

Query  761   TQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP----  807
               +N  L  +    D    +V + + Q      + P     PI D    NFS +L     
Sbjct  850   DNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGCIGS  906

Query  808   -------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV  860
                     PS    RS IEDLLF+KV L+D GF++ Y +C G    RDL+C Q FNG+ V
Sbjct  907   TCAEDGNGPSAMRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKV  966

Query  861   LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ  920
             LPP+L++  I+ YT+   A  +   WT  AG    +PF++ + YR NG+GVT NVL ENQ
Sbjct  967   LPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVLSENQ  1022

Query  921   KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980
             K+IA+ FN+A+G IQ+   +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I
Sbjct  1023  KMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI  1082

Query  981   LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV  1040
             L+RLD+VEA+ QIDRLI GRL +L  Y+++QL  +  I+ SA  A  K++ECV  Q+ R+
Sbjct  1083  LTRLDRVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQTTRI  1142

Query  1041  DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG  1099
             +FCG G H++S  Q+AP+G+ F+H +YVP   K    +P +C  G +   P+ G FV + 
Sbjct  1143  NFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGLAPKAGYFVQDN  1202

Query  1100  THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH  1159
               W  T  N+Y P+ IT  N+ V  +C V          +   P L  FKEELDK+FKN 
Sbjct  1203  GEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQ  1262

Query  1160  TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW  1217
             TS  PD+ L D   +N + +++  E++R+ +  K LNES I+L+E+G YE Y+KWPWY+W
Sbjct  1263  TSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVW  1321

Query  1218  LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC  1254
             L  + GL  + +  ++                CGSCC
Sbjct  1322  L--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCC  1356


 Score = 90.5 bits (223),  Expect = 6e-17, Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 80/178 (45%), Gaps = 5/178 (3%)

Query  259  TAGAAA---YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT  315
            TAG+     Y+V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  
Sbjct  249  TAGSTLLPLYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDL  308

Query  316  SNFRVQPTESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASF  374
            S + VQP   +  R PN+ + C   E   A    S   W R+   NC  + S L      
Sbjct  309  SGYTVQPVGVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQA  367

Query  375  STFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             +  C  +  +K+  +CF +V  D F I       +  G +G +   NYK+    T C
Sbjct  368  ESLSCNNIDASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC  425


>P22432.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1376

 Score = 459 bits (1180),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 284/775 (37%), Positives = 416/775 (54%), Gaps = 57/775 (7%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +    CV ++  G+TG GV  E    +   +Q    D+    +  RD  T +   I 
Sbjct  624   NTEVATGVCVRYDLYGITGQGVFKEVKADYYNSWQALLYDVNGNLNGFRDLTTNKTYTIR  683

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
              C  G VS        + + A+LY+++NC+ V     + +  P         N F +  G
Sbjct  684   SCYSGRVSAAY--HKEAPEPALLYRNINCSYVFTNNISREENPL--------NYFDSYLG  733

Query  649   CLIGAEHVNNSY--ECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYT----MSLGAE  702
             C++ A++  +     CD+ +GAG+C  Y       RRAR   S      T    M +   
Sbjct  734   CVVNADNRTDEALPNCDLRMGAGLCVDYSKS----RRARRSVSTGYRLTTFEPYMPMLVN  789

Query  703   NSVAYSNN--SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFC  760
             +SV        + IPTNFTI    E + +   K ++DC  ++CGD+  C   L++YGSFC
Sbjct  790   DSVQSVGGLYEMQIPTNFTIGHHEEFIQIRAPKVTIDCAAFVCGDNAACRQQLVEYGSFC  849

Query  761   TQLNRALTGIAVEQDKNTQEVFAQVKQ----IYKTP-----PIKDFGGFNFSQILP----  807
               +N  L  +    D    +V + + Q      + P     PI D    NFS +L     
Sbjct  850   DNVNAILNEVNNLLDNMQLQVASALMQGVTISSRLPDGISGPIDDI---NFSPLLGCIGS  906

Query  808   -------DPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV  860
                     PS    RS IEDLLF+KV L+D GF++ Y +C G    RDL+C Q FNG+ V
Sbjct  907   TCAEDGNGPSAIRGRSAIEDLLFDKVKLSDVGFVEAYNNCTGGQEVRDLLCVQSFNGIKV  966

Query  861   LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ  920
             LPP+L++  I+ YT+   A  +   WT  AG    +PF++ + YR NG+GVT NVL ENQ
Sbjct  967   LPPVLSESQISGYTAGATAAAMFPPWTAAAG----VPFSLNVQYRINGLGVTMNVLSENQ  1022

Query  921   KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980
             K+IA+ FN+A+G IQ+   +T SALGK+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I
Sbjct  1023  KMIASAFNNALGAIQEGFDATNSALGKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI  1082

Query  981   LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV  1040
             L+RLD VEA+ QIDRLI GRL +L  Y+++QL  +  I+ SA  A  K++ECV  Q+ R+
Sbjct  1083  LTRLDAVEAKAQIDRLINGRLTALNAYISKQLSDSTLIKFSAAQAIEKVNECVKSQTTRI  1142

Query  1041  DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG  1099
             +FCG G H++S  Q+AP+G+ F+H +YVP   K    +P +C  G +   P+ G FV + 
Sbjct  1143  NFCGNGNHILSLVQNAPYGLCFIHFSYVPTSFKTANVSPGLCISGDRGLAPKAGYFVQDN  1202

Query  1100  THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH  1159
               W  T  N+Y P+ IT  N+ V  +C V          +   P L  FKEELDK+FKN 
Sbjct  1203  GEWKFTGSNYYYPEPITDKNSVVMISCAVNYTKAPEVFLNNSIPNLPDFKEELDKWFKNQ  1262

Query  1160  TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW  1217
             TS  PD+ L D   +N + +++  E++R+ +  K LNES I+L+E+G YE Y+KWPWY+W
Sbjct  1263  TSIAPDLSL-DFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVKWPWYVW  1321

Query  1218  LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCC-KFDEDDSEPVLKGVKLH  1271
             L  + GL  + +  ++                CGSCC ++       V+  +  H
Sbjct  1322  L--LIGLAGVAVCVLLFFICCCTGCGSCCFRKCGSCCDEYGGHQDSIVIHNISAH  1374


 Score = 92.0 bits (227),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 184/470 (39%), Gaps = 84/470 (18%)

Query  1    MFVFLVLLP--------LVSSQCVNLTTRTQLPPAYTN-----SFTRGVYYP-DKVFRSS  46
            +FVF++LLP            Q VN        P+ +      S   G YY  D+V+ ++
Sbjct  2    LFVFILLLPSCLGYIGDFRCIQTVNYNGNNASAPSISTEAVDVSKGLGTYYVLDRVYLNA  61

Query  47   VLHSTQDLFLPFFSNVTWFHAIHVSGTN--GTKRFDNPVL-PFNDGVYF-----------  92
             L  T   + P   + + +  + ++GTN      F  P L  FNDG++            
Sbjct  62   TLLLTG--YYPV--DGSNYRNLALTGTNTLSLTWFKPPFLSEFNDGIFAKVQNLKTNTPT  117

Query  93   -ASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKS  151
             A++    I+ G +FG T  S T  L   NN   ++  VC +  C  P+     + N   
Sbjct  118  GATSYFPTIVIGSLFGNT--SYTVVLEPYNNI--IMASVCTYTICQLPYTPCKPNTNGNR  173

Query  152  ----W-MESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSK  206
                W  + +  +     N TF  V+ P+L               F F    G F  Y  
Sbjct  174  VIGFWHTDVKPPICLLKRNFTFN-VNAPWLY--------------FHFYQQGGTFYAYYA  218

Query  207  HTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAA--  264
              P           SA   L  + IG  +T++  L  +     TP       TAG+    
Sbjct  219  DKP-----------SATTFLFSVYIGDILTQYFVLPFI----CTP-------TAGSTLLP  256

Query  265  -YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPT  323
             Y+V  L  R +L  +NE G IT AVDCA   +SE KC  +S     G+Y  S + VQP 
Sbjct  257  LYWVTPLLKRQYLFNFNEKGVITSAVDCASSYISEIKCKTQSLLPSTGVYDLSGYTVQPV  316

Query  324  ESIV-RFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGV  382
              +  R PN+ + C   E   A    S   W R+   NC  + S L       +  C  +
Sbjct  317  GVVYRRVPNLPD-CKIEEWLTAKSVPSPLNWERRTFQNCNFNLSSLLRYVQAESLSCNNI  375

Query  383  SPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
              +K+  +CF +V  D F I       +  G +G +   NYK+    T C
Sbjct  376  DASKVYGMCFGSVSVDKFAIPRSRQIDLQIGNSGFLQTANYKIDTAATSC  425


>Q9IKD1.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; AltName: Full=90B; Contains: RecName: 
Full=Spike protein S2; AltName: Full=90A; Flags: Precursor
Length=1360

 Score = 455 bits (1171),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 285/774 (37%), Positives = 419/774 (54%), Gaps = 63/774 (8%)

Query  530   STNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDIT  588
             +T +V   CV ++  G TG GV  E    +   +Q    D+    +  RD  T +   + 
Sbjct  611   NTEVVTGVCVKYDLYGSTGQGVFKEVKADYYNSWQNLLYDVNGNLNGFRDIVTNKTYLLR  670

Query  589   PCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAG  648
              C  G VS        + + A+LY+++ C  V     + + TP         N F +  G
Sbjct  671   SCYSGRVSAAY--HQDAPEPALLYRNLKCDYVFNNNISREETPL--------NYFDSYLG  720

Query  649   CLIGAEHVNNSYE-----CDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAEN  703
             C+I A+   NS E     CD+ +G+G+C +Y     + R  RSV++     Y ++     
Sbjct  721   CVINAD---NSTEQSVDACDLRMGSGLCVNYSI---AHRARRSVST----GYKLTTFEPF  770

Query  704   SVAYSNNSIA---------IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLL  754
             +V+  N+S+          IPTNFTI+   E +     K ++DC  ++CGD T C   L+
Sbjct  771   TVSIVNDSVESVGGLYEMQIPTNFTIASHQEFIQTRSPKVTIDCAAFVCGDYTACRQQLV  830

Query  755   QYGSFCTQLNRALTGIAVEQDK-NTQEVFAQVKQIYKTPPIKD-----FGGFNFSQIL--  806
              YGSFC  +N  L  +    D    Q   A ++ +  +  + D         NFS +L  
Sbjct  831   DYGSFCDNINAILGEVNNLIDTMQLQVASALIQGVTLSSRLADGISGQIDDINFSPLLGC  890

Query  807   --PDPSKPSK----RSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTV  860
                D S+ +K    RS IED+LF+KV L+D GF++ Y +C G    RDL+C Q FNG+ V
Sbjct  891   LGSDCSEGTKAAQGRSAIEDVLFDKVKLSDVGFVESYNNCTGGQEVRDLLCVQSFNGIKV  950

Query  861   LPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQ  920
             LPP+L++  I+ YT+   A  +   W+  AG    +PFA+ + YR NG+GVT NVL ENQ
Sbjct  951   LPPVLSESQISGYTAGATASAMFPPWSAAAG----VPFALSVQYRINGLGVTMNVLSENQ  1006

Query  921   KLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDI  980
             K+IA+ FN+AIG IQ+   +T SAL K+Q VVN NA+ALN L+ QLS+ FGAIS+ L +I
Sbjct  1007  KMIASSFNNAIGAIQEGFDATNSALAKIQSVVNANAEALNNLLNQLSNRFGAISASLQEI  1066

Query  981   LSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRV  1040
             LSRLD +EA+ QIDRLI GRL +L  YV++QL     I+ SA  A  K++ECV  QS R+
Sbjct  1067  LSRLDALEAQAQIDRLINGRLTALNAYVSKQLSDMTLIKVSAAQAIEKVNECVKSQSPRI  1126

Query  1041  DFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG-KAHFPREGVFVSNG  1099
             +FCG G H++S  Q+AP+G+ F+H +YVP        +P +C  G +   P+ G FV + 
Sbjct  1127  NFCGNGNHILSLVQNAPYGLYFIHFSYVPTSFTTVNVSPGLCISGDRGLAPKAGYFVQDH  1186

Query  1100  THWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNH  1159
               W  T  N+Y P+ IT  N+ V  +C V          +     L  FKEELDK+FKN 
Sbjct  1187  GEWKFTGSNYYYPESITDKNSVVMSSCAVNYTKAPEVFLNTSITNLPDFKEELDKWFKNQ  1246

Query  1160  TS--PDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIW  1217
             TS  PD+   DI  +N + +++  E++R+ +  KNLNES I+L+E+G YE Y+KWPWY+W
Sbjct  1247  TSIVPDLSF-DIGKLNVTFLDLSYEMNRIQDAIKNLNESYINLKEIGTYEMYVKWPWYVW  1305

Query  1218  LGFIAGLIAIVMVTIMLCCMTSCCSCLKGCCSCGSCCKFDEDDSEPVLKGVKLH  1271
             L  + GL  + +  ++                CG+CC    D+      G+ +H
Sbjct  1306  L--LIGLAGVAVCVLLFFICCCTGCGSCCFKKCGNCC----DEYGGRQAGIVIH  1353


 Score = 89.4 bits (220),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 55/178 (31%), Positives = 81/178 (46%), Gaps = 6/178 (3%)

Query  259  TAGAAA--YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTS  316
            T+G ++  Y+V  L  R +L  +N+ G IT AVDCA    SE KC  +S     G+Y  S
Sbjct  250  TSGVSSPQYWVTPLVKRQYLFNFNQKGIITSAVDCASSYTSEIKCKTQSMNPNTGVYDLS  309

Query  317  NFRVQPTESIVRFPNITNL--CPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASF  374
             + VQP   + R   + NL  C   E   A    S   W RK   NC  + S L      
Sbjct  310  GYTVQPVGLVYR--RVRNLPDCKIEEWLAANTVPSPLNWERKTFQNCNFNLSSLLRFVQA  367

Query  375  STFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGC  432
             +  C  +  +K+  +CF ++  D F I       +  G++G +  +NYK+    T C
Sbjct  368  ESLSCSNIDASKVYGMCFGSISIDKFAIPNSRRVDLQLGKSGLLQSFNYKIDTRATSC  425


>Q5MQD0.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1356

 Score = 452 bits (1164),  Expect = 4e-136, Method: Compositional matrix adjust.
 Identities = 265/748 (35%), Positives = 413/748 (55%), Gaps = 45/748 (6%)

Query  528   KKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILD  586
             + +T +  + CV+++  G+TG G+  E +  +   +Q    D        +D  T +  +
Sbjct  611   QPNTEVFTDVCVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYN  670

Query  587   ITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTR  646
             I PC  G VS       +S  +A+LY+++ C+ V      + ++ T + Y      F + 
Sbjct  671   IFPCYAGRVSAAFHQNASS--LALLYRNLKCSYV-----LNNISLTTQPY------FDSY  717

Query  647   AGCLIGAEHVNN--SYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENS  704
              GC+  A+++ +     C + +G+G C  Y + ++S  R +  +  +  +Y        +
Sbjct  718   LGCVFNADNLTDYSVSSCALRMGSGFCVDYNSPSSSSSRRKRRSISA--SYRFVTFEPFN  775

Query  705   VAYSNNSI---------AIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQ  755
             V++ N+SI          IPTNFTI    E +  +  K ++DC++++C +   C +LL +
Sbjct  776   VSFVNDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSPKVTIDCSLFVCSNYAACHDLLSE  835

Query  756   YGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQ------IYKTPPIKDFGGFNFSQI---L  806
             YG+FC  +N  L  +    D     V   + Q         T    D    NF  +   L
Sbjct  836   YGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLSSNLNTNLHFDVDNINFKSLVGCL  895

Query  807   PDPSKPSKRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLT  866
                   S RSF EDLLF+KV L+D GF++ Y +C G    RDL+C Q FNG+ VLPP+L+
Sbjct  896   GPHCGSSSRSFFEDLLFDKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILS  955

Query  867   DEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ  926
             +  I+ YT+A     +   W+  AG    IPF++ + YR NG+GVT +VL +NQKLIA  
Sbjct  956   ESQISGYTTAATVAAMFPPWSAAAG----IPFSLNVQYRINGLGVTMDVLNKNQKLIATA  1011

Query  927   FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDK  986
             FN+A+  IQ+  S+T SAL K+Q VVN NAQALN+L++QL + FGAISS L +ILSRLD 
Sbjct  1012  FNNALLSIQNGFSATNSALAKIQSVVNSNAQALNSLLQQLFNKFGAISSSLQEILSRLDA  1071

Query  987   VEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKG  1046
             +EA+VQIDRLI GRL +L  YV+QQL   + ++  A LA  K++ECV  QS R++FCG G
Sbjct  1072  LEAQVQIDRLINGRLTALNAYVSQQLSDISLVKFGAALAMEKVNECVKSQSPRINFCGNG  1131

Query  1047  YHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF-PREGVFVSNGTHWFVT  1105
              H++S  Q+AP+G++F+H +Y P   K    +P +C  G     P++G F+ +  HW  T
Sbjct  1132  NHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCISGDVGIAPKQGYFIKHNDHWMFT  1191

Query  1106  QRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTS--PD  1163
               ++Y P+ I+  N      C V          +   P+L  F+ EL  +FKN TS  P+
Sbjct  1192  GSSYYYPEPISDKNVVFMNTCSVNFTKAPLVYLNHSVPKLSDFESELSHWFKNQTSIAPN  1251

Query  1164  VDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             + L ++  INA+ +++  E++ + E  K+LN S I+L+++G YE Y+KWPWY+WL     
Sbjct  1252  LTL-NLHTINATFLDLYYEMNLIQESIKSLNNSYINLKDIGTYEMYVKWPWYVWLLISFS  1310

Query  1224  LIAIVMVTIMLCCMTSCCS-CLKGCCSC  1250
              I  +++   +CC T C S C   C +C
Sbjct  1311  FIIFLVLLFFICCCTGCGSACFSKCHNC  1338


 Score = 87.4 bits (215),  Expect = 5e-16, Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 2/173 (1%)

Query  265  YYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTE  324
            Y+V  L  R +LLK++  G IT+AVDC+    SE +C  KS     G+Y  S F V+P  
Sbjct  256  YWVTPLSKRQYLLKFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVA  315

Query  325  SI-VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVS  383
            ++  R P++ + C   +  N     S   W RK  SNC  + S L       +F C    
Sbjct  316  TVHRRIPDLPD-CDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCNNFD  374

Query  384  PTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAW  436
             +K+   CF ++  D F I       +  G +G +   NYK+    + C + +
Sbjct  375  ESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSNYKIDTTSSSCQLYY  427


>P15423.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1173

 Score = 364 bits (934),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 242/779 (31%), Positives = 369/779 (47%), Gaps = 101/779 (13%)

Query  521   PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ  580
             P  V G     N+  +KC  +N   ++G GV+  SN  FL    +     +     +D  
Sbjct  429   PQPVEGVSSFMNVTLDKCTKYNIYDVSGVGVIRVSNDTFLNGITYTSTSGNLL-GFKDVT  487

Query  581   TLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS  640
                I  ITPC            N  +Q+ V  Q         A+    L+  +  Y   S
Sbjct  488   KGTIYSITPC------------NPPDQLVVYQQ---------AVVGAMLSENFTSYGF-S  525

Query  641   NVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYT  696
             NV +            N +Y C   +      G+CA        PR     +  +I+   
Sbjct  526   NVVELPKFFYAS----NGTYNCTDAVLTYSSFGVCADGSIIAVQPRNVSYDSVSAIVTAN  581

Query  697   MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY  756
             +S               IP+N+T SV  E L ++ T   VDC+ Y+C  +  C  LL QY
Sbjct  582   LS---------------IPSNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVELLKQY  626

Query  757   GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPD----PSKP  812
              S C  +  AL   A  +  +  E+    K+ +    +  FG +N S ++P      S+ 
Sbjct  627   TSACKTIEDALRNSARLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPTSGSRV  686

Query  813   SKRSFIEDLLFNKVTLADAGFI-KQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA  871
             + RS IED+LF+K+  +  G +   Y  C   ++  DL CAQ +NG+ VLP +   E +A
Sbjct  687   AGRSAIEDILFSKLVTSGLGTVDADYKKCTKGLSIADLACAQYYNGIMVLPGVADAERMA  746

Query  872   QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAI  931
              YT +L+ G    G T    +A+ IPF++ +  R N + +  +VL ENQK++A  FN A+
Sbjct  747   MYTGSLIGGIALGGLT----SAVSIPFSLAIQARLNYVALQTDVLQENQKILAASFNKAM  802

Query  932   GKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
               I D+              L + A+AL K+QDVVNQ   +LN L  QL  NF AISS +
Sbjct  803   TNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSI  862

Query  978   NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS  1037
               I  RLD ++A+ Q+DRLITGRL +L  +V+  L +  E+RAS  LA  K++ECV  QS
Sbjct  863   QAIYDRLDTIQADQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQS  922

Query  1038  KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHF----PREG  1093
             KR  FCG G H+ S   +AP G+VFLH   +P Q K+      +C DG   +    P   
Sbjct  923   KRYGFCGNGTHIFSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGTNGYVLRQPNLA  982

Query  1094  VFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPE---LDSFKE  1150
             ++   G ++ +T R  +EP+I T  +     NC+V    ++ +    + PE   ++   +
Sbjct  983   LY-KEGNYYRITSRIMFEPRIPTMADFVQIENCNVTFVNISRSELQTIVPEYIDVNKTLQ  1041

Query  1151  ELDKYFKNHTSPDVDLGDISGINASVVNIQKEID--------------RLNEVAKNLNES  1196
             EL     N+T PD+    +   N +++N+  EI               +L  +  N+N +
Sbjct  1042  ELSYKLPNYTVPDL---VVEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNINST  1098

Query  1197  LIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCC-------SCLKGCC  1248
             L+DL+ L + E YIKWPW++WL     LI +V + ++ CC T CC       S ++GCC
Sbjct  1099  LVDLKWLNRVETYIKWPWWVWLCISVVLIFVVSMLLLCCCSTGCCGFFSCFASSIRGCC  1157


>P12650.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1162

 Score = 352 bits (904),  Expect = 2e-101, Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 296/543 (55%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  YICG+S EC NL  QYG  C  +   +  +
Sbjct  583   NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYICGNSLECRNLFQQYGPVCDNMLSVVNSV  642

Query  771   AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S  L  PS P +RSFIEDLLF  V 
Sbjct  643   GQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLFLTTPSSPRRRSFIEDLLFTSVE  702

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y +C        +DL+CA+++NGL VLPP++T EM   YTS+L+A     G
Sbjct  703   SVGLPTDDAYKNCTAGPLGFLKDLVCAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG  762

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T    AA  IPFA Q+  R N +G+TQ++L +NQ+ IA  FN AIG +Q+   ST+ AL
Sbjct  763   IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL  818

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVVN+ +  L   +  L+ NFGAISSV+ +I  +LD ++A  Q+DRLITGRL SL 
Sbjct  819   QQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYLQLDAIQANAQVDRLITGRLSSLS  878

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  879   VLASAKQAEYIRVSQQRELATQKINECVKSQSTRYSFCGNGRHVLTIPQNAPNGIVFIHF  938

Query  1066  TYVPAQEKNFTTAPAIC-----HDGKAHFP--REGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             TY P    N T     C         A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  939   TYTPESFVNVTAIVGFCVKPNNASQYAIVPVNGRGIFIQVNDSYYITARDMYMPRHITAG  998

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYF--KNHTSPDVDLGDISGINAS  1175
             +     +C      VN TV    ++ +   F +EL K++    +  PD D  + +     
Sbjct  999   DIVTLTSCQANYVSVNKTVITTFVENDDFDFDDELSKWWIETKYELPDFDQFNYT---IP  1055

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             V+NI  +ID++ EV K LN+SLIDL+ L   + YIKWPWY+WL      I  +++   + 
Sbjct  1056  VLNITYDIDKIEEVIKGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWVF  1115

Query  1236  CMT  1238
              MT
Sbjct  1116  FMT  1118


>P12651.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1162

 Score = 349 bits (896),  Expect = 2e-100, Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 297/543 (55%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  Y+CG+S +C +L  QYG  C  +   +  I
Sbjct  583   NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLDCRDLFQQYGPVCDNILSVVNSI  642

Query  771   AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S +L  PS P +RSFIEDLLF  V 
Sbjct  643   GQKEDMELLNFYSSTKPAGFNTPFLSNVSTGEFNISLLLTTPSSPRRRSFIEDLLFTSVE  702

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y +C        +DL CA+++NGL VLPP++T EM   YTS+L+A     G
Sbjct  703   SVGLPTDDAYKNCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG  762

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T    AA  IPFA Q+  R N +G+TQ++L +NQ+ IA  FN AIG++Q+   ST+ AL
Sbjct  763   IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGRMQEGFRSTSLAL  818

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVVN+ +  L   +  L+ NFGAISSV+ +I  +LD ++A  Q+DRLITGRL SL 
Sbjct  819   QQIQDVVNKQSAILTETMASLNKNFGAISSVIQEIYQQLDAIQANAQVDRLITGRLSSLS  878

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  879   VLASAKQAEHIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF  938

Query  1066  TYVPAQEKNFTTAPAIC-----HDGKAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             +Y P    N T     C         A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  939   SYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAG  998

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS  1175
             +     +C      VN TV    +  +   F +EL K++ +  H  PD D  + +     
Sbjct  999   DIVTLTSCQANYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VP  1055

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             +++I  EIDR+  V + LN+SLIDL++L   + YIKWPWY+WL      I  +++   + 
Sbjct  1056  ILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVF  1115

Query  1236  CMT  1238
              MT
Sbjct  1116  FMT  1118


>P05135.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1163

 Score = 347 bits (890),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 296/543 (55%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  Y+CG+S EC  L  QYG  C  +   +  +
Sbjct  584   NVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSV  643

Query  771   AVEQDKNTQEVFAQVK-QIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S +L  PS  S RSFIEDLLF  V 
Sbjct  644   GQKEDMELLYFYSSTKPSGFNTPVLSNVSTGEFNISLLLTPPSSASGRSFIEDLLFTSVE  703

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y  C        +DL CA+++NGL VLPP++T EM   YTS+L+A     G
Sbjct  704   SVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG  763

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T  AGA   IPFA Q+  R N +G+TQ++L++NQ+ IA  FN AIG +Q+   ST+ AL
Sbjct  764   IT-SAGA---IPFATQLQARINHLGITQSLLFKNQEKIAASFNKAIGHMQEGFRSTSLAL  819

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVVN+ +  L   +  L+ NFGAISSVL DI  +LD ++A+ Q+DR+ITGRL SL 
Sbjct  820   QQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSLS  879

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  880   VLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF  939

Query  1066  TYVPAQEKNFTTAPAICHDGK-----AHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             TY P    N T     C +       A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  940   TYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITAG  999

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS  1175
             +     +C      VN TV    +  +   F +EL K++ +  H  PD D  + +     
Sbjct  1000  DIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYT---VP  1056

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             +++I  EIDR+  V + LN+SLIDL+ L   + YIKWPWY+WL      I  ++V   + 
Sbjct  1057  ILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFLTIIFILVLCWIF  1116

Query  1236  CMT  1238
              MT
Sbjct  1117  FMT  1119


>Q6Q1S2.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1356

 Score = 349 bits (895),  Expect = 3e-99, Method: Compositional matrix adjust.
 Identities = 253/822 (31%), Positives = 379/822 (46%), Gaps = 113/822 (14%)

Query  488   CYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLT  547
             C FPL++     +  +    Y        +   P  V G ++ +NLV N C  +N     
Sbjct  577   CNFPLEATWHYTSYTIVGALYVTWSEGNSITGVPYPVSGIREFSNLVLNNCTKYNIYDYV  636

Query  548   GTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQ  607
             GTG++  SN+           +A     V +   L  L     S G + ++TP  N  +Q
Sbjct  637   GTGIIRSSNQS----------LAGGITYVSNSGNL--LGFKNVSTGNIFIVTP-CNQPDQ  683

Query  608   VAVLYQDV-----NCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYEC  662
             VAV  Q +        E    +      P +   S G N       C       +N    
Sbjct  684   VAVYQQSIIGAMTAVNESRYGLQNLLQLPNFYYVSNGGN------NCTTAVMTYSN----  733

Query  663   DIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISV  722
                   GICA        PR +      +II   +S               IP+N+T SV
Sbjct  734   -----FGICADGSLIPVRPRNSSDNGISAIITANLS---------------IPSNWTTSV  773

Query  723   TTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVF  782
               E L ++ T   VDC  Y+C  +  C NLL QY S C  +  AL   A  +  +   + 
Sbjct  774   QVEYLQITSTPIVVDCATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVSSML  833

Query  783   AQVKQIYKTPPIKDFGGFNFSQILPD----PSKPSKRSFIEDLLFNKVTLADAGFIK-QY  837
                   +    +  FG +N S +LP      S+ + RS +EDLLF+KV  +  G +   Y
Sbjct  834   TFDSNAFSLANVTSFGDYNLSSVLPQRNIRSSRIAGRSALEDLLFSKVVTSGLGTVDVDY  893

Query  838   GDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIP  897
               C   ++  DL CAQ +NG+ VLP +   E +A YT +L+ G +  G T    +A  IP
Sbjct  894   KSCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLT----SAAAIP  949

Query  898   FAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI-------QDSLSSTAS-------  943
             F++ +  R N + +  +VL ENQK++A  FN AI  I        D+++ TA        
Sbjct  950   FSLALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTI  1009

Query  944   ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQS  1003
             AL K+QDVVNQ   ALN L  QL  NF AIS+ +  I  RLD ++A+ Q+DRLITGRL +
Sbjct  1010  ALNKIQDVVNQQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITGRLAA  1069

Query  1004  LQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFL  1063
             L  +V+Q L +  E+R S  LA  K++ECV  QS R  FCG G H+ S   SAP G++FL
Sbjct  1070  LNAFVSQVLNKYTEVRGSRRLAQQKINECVKSQSNRYGFCGNGTHIFSIVNSAPDGLLFL  1129

Query  1064  HVTYVPAQEKNFTTAPAICHDGKAHF----PREGVFVSNGTHWFVTQRNFYEPQIITTDN  1119
             H   +P   KN      IC DG   +    P   ++  NG  + VT R  ++P++    +
Sbjct  1130  HTVLLPTDYKNVKAWSGICVDGIYGYVLRQPNLVLYSDNGV-FRVTSRVMFQPRLPVLSD  1188

Query  1120  TFVSGNCDVVIGIVNNTVYDPLQPE-------LDSFKEELDKYFKNHTSPDVDLGDISGI  1172
                  NC+V    ++      + P+       L  F + L KY K    P+ DL   +  
Sbjct  1189  FVQIYNCNVTFVNISRVELHTVIPDYVDVNKTLQEFAQNLPKYVK----PNFDL---TPF  1241

Query  1173  NASVVNIQKEIDRLNEVAKNL--------------NESLIDLQELGKYEQYIKWPWYIWL  1218
             N + +N+  E+ +L     +L              N + +DL+ L ++E YIKWPW++WL
Sbjct  1242  NLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQINSTYVDLKLLNRFENYIKWPWWVWL  1301

Query  1219  GFIAGLIAIVMVTIMLCCMTS----CCSCL----KGCCSCGS  1252
               I+ +  +++  ++ CC+++    CC+CL    +GCC CGS
Sbjct  1302  -IISVVFVVLLSLLVFCCLSTGCCGCCNCLTSSMRGCCDCGS  1342


>P12722.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1154

 Score = 345 bits (886),  Expect = 5e-99, Method: Compositional matrix adjust.
 Identities = 201/543 (37%), Positives = 294/543 (54%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  Y+CG+S EC  L  QYG  C  +   +  +
Sbjct  584   NVLIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLECRKLFQQYGPVCDNILSVVNSV  643

Query  771   AVEQDKNTQEVFAQVK-QIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S +L  PS  S RSFIEDLLF  V 
Sbjct  644   GQKEDMELLHFYSSTKPSGFNTPVLSNVSTGEFNISLLLTPPSSASGRSFIEDLLFTSVE  703

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y  C        +DL CA+++NGL VLPP++T EM   YTS+L+A     G
Sbjct  704   SVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTLYTSSLVASMAFGG  763

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T   GA   IPFA Q+  R N +G+TQ++L +NQ+ IA  FN AIG +Q+   ST+ AL
Sbjct  764   IT-SVGA---IPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL  819

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVVN+ +  L   +  L+ NFGAISSVL DI  +LD ++A+ Q+DR+ITGRL SL 
Sbjct  820   QQIQDVVNKQSSILTETMASLNKNFGAISSVLQDIYQQLDSIQADAQVDRIITGRLSSLS  879

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  880   VLASAKQAEYYRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF  939

Query  1066  TYVPAQEKNFTTAPAICHDGK-----AHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             TY P    N T     C +       A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  940   TYTPESFVNVTAIVGFCVNPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRDITAG  999

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS  1175
             +     +C      VN TV    +  +   F +EL K++ +  H  PD D  + +     
Sbjct  1000  DIVTLTSCQANYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYT---VP  1056

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             +++I  EIDR+  V + LN+SLIDL+ L   + YIKWPWY+WL      I  +++   L 
Sbjct  1057  ILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWLF  1116

Query  1236  CMT  1238
              MT
Sbjct  1117  FMT  1119


>P27655.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1225

 Score = 344 bits (882),  Expect = 4e-98, Method: Compositional matrix adjust.
 Identities = 255/792 (32%), Positives = 390/792 (49%), Gaps = 119/792 (15%)

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---  569
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+   
Sbjct  440   SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGF  499

Query  570   ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQL  629
              + +D V       I  +TPC     + I  G       A++    +     +A+    +
Sbjct  500   KNVSDGV-------IYSVTPCDVSAQAAIIDG-------AIVGAITSINSELLALTHWTI  545

Query  630   TPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARS  686
             TP +  YS  +       G  IG+    N  +C+  I     G+C +             
Sbjct  546   TPNFYYYSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN-------------  588

Query  687   VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS  746
               +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +
Sbjct  589   -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN  645

Query  747   TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI  788
               C+ LL QY S C  + +AL  G  +E  +    +F                   +  I
Sbjct  646   PRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPI  705

Query  789   YKTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD  843
             YK  P  + GGF       ILP D SK   RS IEDLLF+KV  +  G + + Y  C G 
Sbjct  706   YKEWP--NIGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGG  763

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
                 DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ + 
Sbjct  764   YDIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQ  820

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ  949
              R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+Q
Sbjct  821   ARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQ  880

Query  950   DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT  1009
             DVVN   QAL  L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+
Sbjct  881   DVVNTQGQALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS  940

Query  1010  QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP  1069
             Q L R AE+RAS  LA  K++ECV  QS R  FCG G HL S   +AP+G++F H   +P
Sbjct  941   QTLTRQAEVRASRQLAKDKVNECVKSQSHRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP  1000

Query  1070  AQEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV  1122
                +  T    IC  DG   F       +  +F +   ++++T R  Y+P++ T+ +   
Sbjct  1001  TAYETVTAWSGICALDGDRTFGLVVKDVQLTLFRNLDDNFYLTPRTMYQPRVATSSDFVQ  1060

Query  1123  SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
                CDV+   VN TV D   + P+      + ++ L+ +  N T P++ + D+   NA+ 
Sbjct  1061  IEGCDVL--FVNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTM-DV--FNATY  1115

Query  1177  VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA  1222
             +N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + 
Sbjct  1116  LNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LI  1173

Query  1223  GLIAIVMVTIML  1234
             GL+ I  + ++L
Sbjct  1174  GLVVIFCIPLLL  1185


>P11223.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Contains: RecName: 
Full=Spike protein S1; Contains: RecName: Full=Spike protein 
S2; Flags: Precursor
Length=1162

 Score = 341 bits (875),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 195/543 (36%), Positives = 293/543 (54%), Gaps = 22/543 (4%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             ++ IP +F ++VT E +   M K  ++C  Y+CG S +C  L  QYG  C  +   +  +
Sbjct  583   NVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGSSLDCRKLFQQYGPVCDNILSVVNSV  642

Query  771   AVEQDKNTQEVFAQVKQI-YKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVT  827
               ++D      ++  K   + TP + +   G FN S +L +PS   KRS IEDLLF  V 
Sbjct  643   GQKEDMELLNFYSSTKPAGFNTPVLSNVSTGEFNISLLLTNPSSRRKRSLIEDLLFTSVE  702

Query  828   LADAGFIKQYGDCLGDIAA--RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG  885
                      Y +C        +DL CA+++NGL VLPP++T EM A YTS+L+A     G
Sbjct  703   SVGLPTNDAYKNCTAGPLGFFKDLACAREYNGLLVLPPIITAEMQALYTSSLVASMAFGG  762

Query  886   WTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASAL  945
              T    AA  IPFA Q+  R N +G+TQ++L +NQ+ IA  FN AIG +Q+   ST+ AL
Sbjct  763   IT----AAGAIPFATQLQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLAL  818

Query  946   GKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQ  1005
              ++QDVV++ +  L   +  L+ NFGAISSV+ +I  + D ++A  Q+DRLITGRL SL 
Sbjct  819   QQIQDVVSKQSAILTETMASLNKNFGAISSVIQEIYQQFDAIQANAQVDRLITGRLSSLS  878

Query  1006  TYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHV  1065
                + +      +     LA  K++ECV  QS R  FCG G H+++ PQ+AP+G+VF+H 
Sbjct  879   VLASAKQAEYIRVSQQRELATQKINECVKSQSIRYSFCGNGRHVLTIPQNAPNGIVFIHF  938

Query  1066  TYVPAQEKNFTTAPAIC-----HDGKAHFPR--EGVFVSNGTHWFVTQRNFYEPQIITTD  1118
             +Y P    N T     C         A  P    G+F+     +++T R+ Y P+ IT  
Sbjct  939   SYTPDSFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQVNGSYYITARDMYMPRAITAG  998

Query  1119  NTFVSGNCDVVIGIVNNTVYDP-LQPELDSFKEELDKYFKN--HTSPDVDLGDISGINAS  1175
             +     +C      VN TV    +  +   F +EL K++ +  H  PD D  + +     
Sbjct  999   DVVTLTSCQANYVSVNKTVITTFVDNDDFDFNDELSKWWNDTKHELPDFDKFNYT---VP  1055

Query  1176  VVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLC  1235
             +++I  EIDR+  V + LN+SLIDL++L   + YIKWPWY+WL      I  +++   + 
Sbjct  1056  ILDIDSEIDRIQGVIQGLNDSLIDLEKLSILKTYIKWPWYVWLAIAFATIIFILILGWVF  1115

Query  1236  CMT  1238
              MT
Sbjct  1116  FMT  1118


>P24413.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1225

 Score = 338 bits (868),  Expect = 3e-96, Method: Compositional matrix adjust.
 Identities = 254/792 (32%), Positives = 387/792 (49%), Gaps = 119/792 (15%)

Query  516   ELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---  569
              ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+   
Sbjct  440   SIVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTILSGLYYTSLSGDLLGF  499

Query  570   ADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQL  629
              + +D V       I  +TPC     + I  GT      ++  + +  T           
Sbjct  500   TNVSDGV-------IYSVTPCDVSAQAAIIDGTIVGAITSINSELLGLTHWTT-------  545

Query  630   TPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARS  686
             TP +  YS  +       G  IG+    N  +C+  I     G+C +             
Sbjct  546   TPNFYYYSIYNYTNDKTRGTPIGS----NDVDCEPVITYSNIGVCKN-------------  588

Query  687   VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS  746
               +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +
Sbjct  589   -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN  645

Query  747   TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI  788
               C+ LL QY S C  + +AL  G  +E  +    +F                   +  I
Sbjct  646   PRCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPI  705

Query  789   YKTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD  843
             YK  P  + GGF       ILP D SK   RS IEDLLF+KV  +  G + + Y  C G 
Sbjct  706   YKEWP--NIGGFWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGG  763

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
                 DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ + 
Sbjct  764   YDIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQ  820

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ  949
              R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+Q
Sbjct  821   ARLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLTTVAKALAKVQ  880

Query  950   DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT  1009
             DVVN   QAL  L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+
Sbjct  881   DVVNTQGQALRHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS  940

Query  1010  QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP  1069
             Q L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P
Sbjct  941   QTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP  1000

Query  1070  AQEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV  1122
                +  T    IC  D    F       +  +F +    +++T R  Y+P++ T+ +   
Sbjct  1001  TAYETVTAWSGICALDVDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQ  1060

Query  1123  SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
                CDV+   VN TV D   + P+      + ++ L+ +  N T P++ L D+   NA+ 
Sbjct  1061  IEGCDVL--FVNTTVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTL-DV--FNATY  1115

Query  1177  VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA  1222
             +N+  EID L            E+A    N+N ++++L+ L + E Y+KWPWY+WL  + 
Sbjct  1116  LNLTGEIDDLEFRSEKLHNTTVELAILIDNINNTVVNLEWLNRIETYVKWPWYVWL--LI  1173

Query  1223  GLIAIVMVTIML  1234
             GL+ I  + ++L
Sbjct  1174  GLVVIFCIPLLL  1185


>Q65984.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1453

 Score = 339 bits (870),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 255/792 (32%), Positives = 389/792 (49%), Gaps = 121/792 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G+TG G++ ++N   L    +     D+    
Sbjct  669   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGITGVGIIRQTNSTLLSGLYYTSLSGDLLGFK  728

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  G       ++  + +  T           T
Sbjct  729   NVSDGV-------IYSVTPCDVSAHAAVIDGAIVGAMTSINSELLGLTHWTT-------T  774

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARS  686
             P +  YS  +   +   G  I +    N  +C+ PI      G+C +             
Sbjct  775   PNFYYYSIYNYTNERTRGTAIDS----NDVDCE-PIITYSNIGVCKN-------------  816

Query  687   VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS  746
               +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  +
Sbjct  817   -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGN  873

Query  747   TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQI  788
               C+ LL QY S C  + +AL  G  +E  +    +F                   +  I
Sbjct  874   PRCNKLLTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTETLDPI  933

Query  789   YKTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD  843
             YK  P  + GG        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G 
Sbjct  934   YKEWP--NIGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGG  991

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMA  903
                 DL+CAQ +NG+ VLP +  D+ +A YT++L AG IT G + G GA + IPFA+ + 
Sbjct  992   YDIADLVCAQYYNGIMVLPGVANDDKMAMYTASL-AGGITLG-SLGGGA-VSIPFAIAVQ  1048

Query  904   YRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQ  949
              R N + +  +VL +NQ+++AN FN AIG I  +              L++ A  L K+Q
Sbjct  1049  ARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKVLAKVQ  1108

Query  950   DVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVT  1009
             DVVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+
Sbjct  1109  DVVNTQGQALSHLTLQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVS  1168

Query  1010  QQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVP  1069
             Q L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P
Sbjct  1169  QTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLP  1228

Query  1070  AQEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFV  1122
                +  T    IC  DG   F       +  +F +    +++T R  Y+P + T+ +   
Sbjct  1229  TAYETVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPIVATSSDFVQ  1288

Query  1123  SGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASV  1176
                CDV+   VN TV D   + P+      + ++ L+ +  N T P++ L DI   NA+ 
Sbjct  1289  IEGCDVL--FVNATVIDLPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FNATY  1343

Query  1177  VNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIA  1222
             +N+  EI+ L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + 
Sbjct  1344  LNLTGEINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LI  1401

Query  1223  GLIAIVMVTIML  1234
             GL+ I  + I+L
Sbjct  1402  GLVVIFCIPILL  1413


>Q0Q466.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1371

 Score = 337 bits (865),  Expect = 4e-95, Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 302/558 (54%), Gaps = 43/558 (8%)

Query  711   SIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGI  770
             +I+IPTNFT+SV TE + +     SVDC MY+C  +  C  LL QY S C  +  AL   
Sbjct  781   NISIPTNFTMSVRTEYIQLFNKPVSVDCAMYVCNGNDRCKQLLSQYTSACKNIESALQLS  840

Query  771   AVEQDKNTQEVFAQVKQIYKTPPIKDF--GGFNFSQILPDPSKPSKRSFIEDLLFNKVTL  828
             A  +      +     +  K   I  F  GG+NF+ ILP  + P  RS IED+LF+KV  
Sbjct  841   ARLESMEVNSMLTVSDEALKLATISQFPGGGYNFTNILP--ANPGARSVIEDILFDKVVT  898

Query  829   ADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWT  887
             +  G + + Y  C   ++  DL CAQ +NG+ VLP +   E +  Y+++L+ G    G T
Sbjct  899   SGLGTVDEDYKRCSNGLSIADLACAQHYNGIMVLPGVADWEKVHMYSASLVGGMTLGGIT  958

Query  888   FGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKI-------------  934
                 +A  +PF+  +  R N + +  +VL  NQ+++AN FNSAI  I             
Sbjct  959   ----SAAALPFSYAVQARLNYVALQTDVLQRNQQMLANSFNSAISNITLAFESVNNAIYQ  1014

Query  935   -QDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQI  993
                 L++ A AL K+QDVVN    AL+ L  QL +NF AIS+ + DI SRLD++ A+ Q+
Sbjct  1015  TSAGLNTVAEALSKVQDVVNGQGNALSQLTVQLQNNFQAISNSIGDIYSRLDQITADAQV  1074

Query  994   DRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCG-KGYHLMSF  1052
             DRLITGRL +L  +V Q L + AE++AS  LA  K++ECV  QS R  FCG +G H+ S 
Sbjct  1075  DRLITGRLAALNAFVAQSLTKYAEVQASRTLAKQKVNECVKSQSPRYGFCGDEGEHIFSL  1134

Query  1053  PQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGK-AHFPREG---VFVSNGTHWFVTQRN  1108
              Q+AP G++FLH   VP    N T    +C D   A   R+    +FV NG ++ V+ R 
Sbjct  1135  TQAAPQGLMFLHTVLVPNGFINVTAVTGLCVDETIAMTLRQSGFVLFVQNG-NYLVSPRK  1193

Query  1109  FYEPQIITTDNTFVSGNCDV-VIGIVNNTVYDPLQPELDSFK--EELDKYFKNHTSPDVD  1165
              +EP+     +      C +  + I NN + D +   +D  K  +E+     N+T PD+ 
Sbjct  1194  MFEPRRPEVADFVQVKTCTISYVNITNNQLPDIIPDYVDVNKTIDEILANLPNNTVPDLP  1253

Query  1166  L-----------GDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPW  1214
             L           G+I+ + A   +++   + L ++ +N+N +L+DLQ L + E +IKWPW
Sbjct  1254  LDVFNQTFLNLTGEIADLEARSESLKNTSEELRQLIQNINNTLVDLQWLNRVETFIKWPW  1313

Query  1215  YIWLGFIAGLIAIVMVTI  1232
             Y+WL  +  LI +V + +
Sbjct  1314  YVWLAIVIALILVVSLLV  1331


>P10033.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1452

 Score = 337 bits (865),  Expect = 8e-95, Method: Compositional matrix adjust.
 Identities = 254/795 (32%), Positives = 389/795 (49%), Gaps = 116/795 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++  +N   L    +     D+    
Sbjct  668   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRRTNSTLLSGLYYTSLSGDLLGFK  727

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  G       ++  + +  T           T
Sbjct  728   NVSDGV-------IYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------T  773

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +   +   G  I +    N  +C+  I     G+C +              
Sbjct  774   PNFYYYSIYNYTSERTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  815

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC  Y+C  + 
Sbjct  816   GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYMQVYTTPVSIDCARYVCNGNP  873

Query  748   ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVF--------AQVKQIYKT----PPI  794
              C+ LL QY S C  + +AL  G  +E  +    +F        A V+    T    P  
Sbjct  874   RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSTENLDPIY  933

Query  795   KDFGGFNFSQI--LPD--PSKPSKRSF---IEDLLFNKVTLADAGFIKQ-YGDCLGDIAA  846
             K++     S +  L D  PS  SKR +   IEDLLF+KV  +  G + + Y  C G    
Sbjct  934   KEWPSIGGSWLGGLKDILPSHNSKRKYGSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDI  993

Query  847   RDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRF  906
              DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ +  R 
Sbjct  994   ADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQARL  1050

Query  907   NGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQDVV  952
             N + +  +VL +NQ+++AN FN AIG I  +              L++ A AL K+QDVV
Sbjct  1051  NYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSQGLATVAKALAKVQDVV  1110

Query  953   NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQL  1012
             N   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L
Sbjct  1111  NTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQTL  1170

Query  1013  IRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQE  1072
              R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P   
Sbjct  1171  TRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAY  1230

Query  1073  KNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN  1125
             +  T    IC  DG   F       +  +F +    +++T R  Y+P++ T+ +      
Sbjct  1231  ETVTAWSGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQIEG  1290

Query  1126  CDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVVNI  1179
             CDV+   VN TV D   + P+      + ++ L+ Y  N T P+  L DI   NA+ +N+
Sbjct  1291  CDVL--FVNATVIDLPSIIPDYIDINQTVQDILENYRPNWTVPEFTL-DI--FNATYLNL  1345

Query  1180  QKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLI  1225
               EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + GL+
Sbjct  1346  TGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLV  1403

Query  1226  AIVMVTIML-CCMTS  1239
              +  + ++L CC ++
Sbjct  1404  VVFCIPLLLFCCFST  1418


>P07946.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1447

 Score = 337 bits (864),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 253/791 (32%), Positives = 386/791 (49%), Gaps = 119/791 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+    
Sbjct  663   IVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGFK  722

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  GT      ++  + +  T           T
Sbjct  723   NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T  768

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +       G  I +    N  +C+  I     G+C +              
Sbjct  769   PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  810

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  + 
Sbjct  811   GAFVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP  868

Query  748   ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY  789
              C+ LL QY S C  + +AL  G  +E  +    +F                   +  IY
Sbjct  869   RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY  928

Query  790   KTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI  844
             K  P  + GG        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G  
Sbjct  929   KEWP--NIGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGY  986

Query  845   AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY  904
                DL+CAQ +NG+ VLP +   + +  YT++ LAG IT G     G A+ IPFA+ +  
Sbjct  987   DIADLVCAQYYNGIMVLPGVANADKMTMYTAS-LAGGITLGAL--GGGAVAIPFAVAVQA  1043

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD  950
             R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+QD
Sbjct  1044  RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD  1103

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q
Sbjct  1104  VVNIQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ  1163

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
              L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P 
Sbjct  1164  TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT  1223

Query  1071  QEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS  1123
               +  T  P IC  DG   F       +  +F +    +++T R  Y+P++ T+ +    
Sbjct  1224  AYETVTAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI  1283

Query  1124  GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
               CDV+   VN TV D   + P+      + ++ L+ +  N T P++   DI   NA+ +
Sbjct  1284  EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL  1338

Query  1178  NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + G
Sbjct  1339  NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG  1396

Query  1224  LIAIVMVTIML  1234
             L+ I  + ++L
Sbjct  1397  LVVIFCIPLLL  1407


>Q7T6T3.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1453

 Score = 337 bits (863),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 257/824 (31%), Positives = 399/824 (48%), Gaps = 122/824 (15%)

Query  485   GFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFN  544
             G NC F + +       GVG   Y +      ++  P+   G    + L  + C ++N  
Sbjct  638   GANCKFDVVARTRTNEQGVG-SLYVIYEEGDNIVGVPSDNSGLHDLSVLHLDSCTDYNIY  696

Query  545   GLTGTGVLTESNKKFLP---FQQFGRDI---ADTTDAVRDPQTLEILDITPCSFGGVSVI  598
             G  G G++ ++N   L    +     D+    + +D V       +  +TPC     + +
Sbjct  697   GRNGVGIIRKTNSTLLSGLYYTSLSGDLLGFKNVSDGV-------VYSVTPCEVSAQAAV  749

Query  599   TPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNN  658
               G       ++  + +  T           TP +  YS    ++      + G    +N
Sbjct  750   IDGAIVGAMTSINSELLGLTHWTT-------TPNFYYYS----IYNYTNERVRGTVTDSN  798

Query  659   SYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAI  714
               +C+ PI      G+C +               +   I  T S G    ++  N  + I
Sbjct  799   DVDCE-PIITYSNIGVCKN--------------GALVFINVTHSDGDVQPISTGN--VTI  841

Query  715   PTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALT-GIAVE  773
             PTNFTISV  E + V  T  S+DC+ Y+C  ++ C+ LL QY S C  + +AL  G  +E
Sbjct  842   PTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNSRCNKLLTQYVSACHTIEQALAMGARLE  901

Query  774   QDKNTQEVFA-----------------QVKQIYKTPPIKDFGGF---NFSQILPDP-SKP  812
               +    +F                   +  IY+  P  + GG        ILP   SK 
Sbjct  902   NMEIDSMLFVSENALKLASVEAFNSTDNLDPIYREWP--NIGGSWLGGLKDILPSHNSKR  959

Query  813   SKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIA  871
               RS IEDLLF+KV  +  G + + Y  C G     DL+CAQ +NG+ VLP +  D+ +A
Sbjct  960   KYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGYDIADLVCAQYYNGIMVLPGVANDDKMA  1019

Query  872   QYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAI  931
              YT++ LAG IT G     G A+ IPFA+ +  R N + +  +VL +NQ+++AN FN AI
Sbjct  1020  MYTAS-LAGGITLGAL--GGGAVSIPFAVAVQARLNYVALQTDVLNKNQQILANAFNQAI  1076

Query  932   GKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVL  977
             G I  +              L++ A AL K+QDVVN   QAL+ L  QL +NF AISS +
Sbjct  1077  GNITQAFGNVNDAIHQTSKGLATVAKALAKVQDVVNTQGQALSHLTVQLQNNFQAISSSI  1136

Query  978   NDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQS  1037
             +DI +RLD++ A+ Q+DRLITGRL +L  +V+Q L R AE+RAS  LA  K++ECV  QS
Sbjct  1137  SDIYNRLDELSADAQVDRLITGRLTALNAFVSQTLTRQAEVRASRQLAKDKVNECVRSQS  1196

Query  1038  KRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC-HDGKAHFP------  1090
             +R  FCG G HL S   +AP+G++F H   +P   +  T    IC  DG   F       
Sbjct  1197  QRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPTAYETVTAWSGICASDGNRTFGLVVKDV  1256

Query  1091  REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYD--PLQPEL---  1145
             +  +F +    +++T R  Y+P++ T+ +      CDV+   VN TV +   + P+    
Sbjct  1257  QLTLFRNLDYKFYLTPRTMYQPRVATSSDFVQIEGCDVL--FVNATVIELPSIIPDYIDI  1314

Query  1146  -DSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLN-----------EVA---  1190
               + ++ L+ +  N T P++ L DI   NA+ +N+  EI+ L            E+A   
Sbjct  1315  NQTVQDILENFRPNWTVPELPL-DI--FNATYLNLTGEINDLEFRSEKLHNTTLELATLI  1371

Query  1191  KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIML  1234
              N+N +L++L+ L + E Y+KWPWY+WL  + GL+ I  + ++L
Sbjct  1372  DNINNTLVNLEWLNRIETYVKWPWYVWL--LIGLVVIFCIPLLL  1413


>P33470.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1449

 Score = 335 bits (859),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 253/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+    
Sbjct  665   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRQTNRTLLSGLYYTSLSGDLLGFK  724

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  GT      ++  + +  T           T
Sbjct  725   NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T  770

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +       G  I +    N  +C+  I     G+C +              
Sbjct  771   PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  812

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  + 
Sbjct  813   GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP  870

Query  748   ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY  789
              C+ LL QY S C  + +AL  G  +E  +    +F                   +  IY
Sbjct  871   RCNKLLTQYVSACQTIEQALAMGARLENMEVGSMLFVSENALKLASVEAFNSSETLDPIY  930

Query  790   KTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI  844
             K  P  + GG        ILP D SK   RS IEDLLF KV  +  G + + Y  C G  
Sbjct  931   KEWP--NIGGSWLEGLKYILPSDNSKRKYRSAIEDLLFAKVVTSGLGTVDEDYKRCTGGY  988

Query  845   AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY  904
                DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ +  
Sbjct  989   DIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQA  1045

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD  950
             R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+QD
Sbjct  1046  RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD  1105

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q
Sbjct  1106  VVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ  1165

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
              L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P 
Sbjct  1166  TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT  1225

Query  1071  QEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS  1123
               +  T    IC  DG   F       +  +F +    +++T R  Y+P++ T+ +    
Sbjct  1226  AYETVTAWAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI  1285

Query  1124  GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
               CDV+   VN TV D   + P+      + ++ L+ +  N T P++   DI   NA+ +
Sbjct  1286  EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL  1340

Query  1178  NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + G
Sbjct  1341  NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG  1398

Query  1224  LIAIVMVTIML  1234
             L+ I  + ++L
Sbjct  1399  LVVIFCIPLLL  1409


>Q01977.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1447

 Score = 334 bits (856),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 252/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++ ++N+  L    +     D+    
Sbjct  663   IVGVPSDNSGVHDLSVLHLDSCTDYNIYGRTGVGIIRKTNRTLLSGLYYTSLSGDLLGFK  722

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  GT      ++  + +  T           T
Sbjct  723   NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T  768

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +       G  I +    N  +C+  I     G+C +              
Sbjct  769   PNFYYYSIYNYTNDRTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  810

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  + 
Sbjct  811   GAFVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP  868

Query  748   ECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFAQ-----------------VKQIY  789
              C+ LL QY S C  + +AL  G  +E  +    +F                   +  IY
Sbjct  869   RCNKLLTQYVSACQTIEQALAMGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY  928

Query  790   KTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI  844
             K  P  + GG        ILP   SK   RS IEDLLF+KV  +  G + + Y  C G  
Sbjct  929   KEWP--NIGGSWLEGLKYILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRCTGGY  986

Query  845   AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY  904
                DL+CAQ +NG+ VLP +   + +  YT++ LAG IT G     G A+ IPFA+ +  
Sbjct  987   DIADLVCAQYYNGIMVLPGVANADKMTMYTAS-LAGGITLGAL--GGGAVAIPFAVAVQA  1043

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD  950
             R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+QD
Sbjct  1044  RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHXTSRGLATVAKALAKVQD  1103

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VV    QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +V+Q
Sbjct  1104  VVXIQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAFVSQ  1163

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
              L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P 
Sbjct  1164  TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVLLPT  1223

Query  1071  QEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS  1123
               +  T  P IC  DG   F       +  +F +    +++T R  Y+P++ T+ +    
Sbjct  1224  AYETVTAWPGICASDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI  1283

Query  1124  GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
               CDV+   VN TV D   + P+      + ++ L+ +  N T P++   DI   NA+ +
Sbjct  1284  EGCDVL--FVNATVSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL  1338

Query  1178  NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + G
Sbjct  1339  NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG  1396

Query  1224  LIAIVMVTIML  1234
             L+ I  + ++L
Sbjct  1397  LVVIFCIPLLL  1407


>P18450.2 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1449

 Score = 332 bits (851),  Expect = 5e-93, Method: Compositional matrix adjust.
 Identities = 250/791 (32%), Positives = 385/791 (49%), Gaps = 119/791 (15%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G +G G++ ++N+  L    +     D+    
Sbjct  665   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRSGVGIIRQTNRTLLSGLYYTSLSGDLLGFK  724

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       I  +TPC     + +  GT      ++  + +  T           T
Sbjct  725   NVSDGV-------IYSVTPCDVSAQAAVIDGTIVGAITSINSELLGLTHWTT-------T  770

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI---GAGICASYQTQTNSPRRARSV  687
             P +  YS  +       G  I +    N  +C+  I     G+C +              
Sbjct  771   PNFYYYSIYNYTNDMTRGTAIDS----NDVDCEPVITYSNIGVCKN--------------  812

Query  688   ASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDST  747
              +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC+ Y+C  + 
Sbjct  813   GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCSRYVCNGNP  870

Query  748   ECSNLLLQYGSFCTQLNRAL-TGIAVEQDKNTQEVFAQ-----------------VKQIY  789
              C+ LL QY S C  + +AL  G  +E  +    +F                   +  IY
Sbjct  871   RCNKLLTQYVSACQTIEQALAVGARLENMEVDSMLFVSENALKLASVEAFNSSETLDPIY  930

Query  790   KTPPIKDFGGF---NFSQILP-DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDI  844
             K  P  + GG        ILP D SK   RS IEDLLF+KV  +  G + + Y  C G  
Sbjct  931   KEWP--NIGGSWLEGLKYILPSDNSKRKYRSAIEDLLFSKVVTSGLGTVDEDYKRCTGGY  988

Query  845   AARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAY  904
                DL+CAQ +NG+ VLP +   + +  YT++L AG IT G     G A+ IPFA+ +  
Sbjct  989   DIADLVCAQYYNGIMVLPGVANADKMTMYTASL-AGGITLGAL--GGGAVAIPFAVAVQA  1045

Query  905   RFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGKLQD  950
             R N + +  +VL +NQ+++A+ FN AIG I  S              L++ A AL K+QD
Sbjct  1046  RLNYVALQTDVLNKNQQILASAFNQAIGNITQSFGKVNDAIHQTSRGLATVAKALAKVQD  1105

Query  951   VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQ  1010
             VVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+  +DRLITGRL +L  +V+Q
Sbjct  1106  VVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAHVDRLITGRLTALNAFVSQ  1165

Query  1011  QLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPA  1070
              L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   +P 
Sbjct  1166  TLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHAVLLPT  1225

Query  1071  QEKNFTTAPAICH-DGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNTFVS  1123
               +  T    IC  DG   F       +  +F +    +++T R  Y+P++ T+ +    
Sbjct  1226  AYETVTAWAGICALDGDRTFGLVVKDVQLTLFRNLDDKFYLTPRTMYQPRVATSSDFVQI  1285

Query  1124  GNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINASVV  1177
               CDV+   VN T+ D   + P+      + ++ L+ +  N T P++   DI   NA+ +
Sbjct  1286  EGCDVL--FVNATLSDLPSIIPDYIDINQTVQDILENFRPNWTVPELTF-DI--FNATYL  1340

Query  1178  NIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGFIAG  1223
             N+  EID L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  + G
Sbjct  1341  NLTGEIDDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--LIG  1398

Query  1224  LIAIVMVTIML  1234
             L+ I  + ++L
Sbjct  1399  LVVIFCIPLLL  1409


>P36300.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1451

 Score = 328 bits (841),  Expect = 9e-92, Method: Compositional matrix adjust.
 Identities = 249/794 (31%), Positives = 384/794 (48%), Gaps = 126/794 (16%)

Query  517   LLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLP---FQQFGRDI---A  570
             ++  P+   G    + L  + C ++N  G TG G++ ++N   L    +     D+    
Sbjct  668   IVGVPSDNSGLHDLSVLHLDSCTDYNIYGRTGVGIIRKTNSTLLSGLYYTSLSGDLLGFK  727

Query  571   DTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLT  630
             + +D V       +  +TPC     + +  G       ++  + +  T           T
Sbjct  728   NVSDGV-------VYSVTPCDVSAQAAVIDGAIVGAMTSINSELLGLTHWTT-------T  773

Query  631   PTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARS  686
             P +  YS  +       G  I     +N  +C+ PI      G+C +             
Sbjct  774   PNFYYYSIYNYTNVMNRGTAI-----DNDIDCE-PIITYSNIGVCKN-------------  814

Query  687   VASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDS  746
               +   I  T S G    ++  N  + IPTNFTISV  E + V  T  S+DC  Y+C  +
Sbjct  815   -GALVFINVTHSDGDVQPISTGN--VTIPTNFTISVQVEYIQVYTTPVSIDCARYVCNGN  871

Query  747   TECSNLLLQYGSFCTQLNRALT-GIAVEQDKNTQEVFA-----------------QVKQI  788
               C+ LL QY S C  + +AL  G  +E  +    +F                   +  I
Sbjct  872   PRCNKLLTQYVSACQTIEQALAMGARLENMEIDSMLFVSENALKLASVEAFNSTENLDPI  931

Query  789   YKTPPIKDFGGF---NFSQILPDP-SKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGD  843
             YK  P  + GG        ILP   SK   RS IEDLLF+KV  +  G + + Y    G 
Sbjct  932   YKEWP--NIGGSWLGGLKDILPSHNSKRKYRSAIEDLLFDKVVTSGLGTVDEDYKRSAGG  989

Query  844   IAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGA--GAALQIPFAMQ  901
                 DL+CA+ +NG+ VLP +  D+ +  YT++L     T G T GA  G A+ IPFA+ 
Sbjct  990   YDIADLVCARYYNGIMVLPGVANDDKMTMYTASL-----TGGITLGALSGGAVAIPFAVA  1044

Query  902   MAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDS--------------LSSTASALGK  947
             +  R N + +  +VL +NQ+++AN FN AIG I  +              L++ A AL K
Sbjct  1045  VQARLNYVALQTDVLNKNQQILANAFNQAIGNITQAFGKVNDAIHQTSKGLATVAKALAK  1104

Query  948   LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTY  1007
             +QDVVN   QAL+ L  QL +NF AISS ++DI +RLD++ A+ Q+DRLITGRL +L  +
Sbjct  1105  VQDVVNTQGQALSHLTVQLQNNFQAISSSISDIYNRLDELSADAQVDRLITGRLTALNAF  1164

Query  1008  VTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTY  1067
             V+Q L R AE+RAS  LA  K++ECV  QS+R  FCG G HL S   +AP+G++F H   
Sbjct  1165  VSQTLTRQAEVRASRQLAKDKVNECVRSQSQRFGFCGNGTHLFSLANAAPNGMIFFHTVL  1224

Query  1068  VPAQEKNFTTAPAIC-HDGKAHFP------REGVFVSNGTHWFVTQRNFYEPQIITTDNT  1120
             +P   +  T    IC  DG   F       +  +F +    +++T R  Y+P++ T+ + 
Sbjct  1225  LPTAYETVTAWSGICASDGSRTFGLVVEDVQLTLFRNLDEKFYLTPRTMYQPRVATSSDF  1284

Query  1121  FVSGNCDVVIGIVNNTVYD--PLQPEL----DSFKEELDKYFKNHTSPDVDLGDISGINA  1174
                  CDV+   VN TV +   + P+      + ++ L+ +  N T P++ L DI   +A
Sbjct  1285  VQIEGCDVL--FVNGTVIELPSIIPDYIDINQTVQDILENFRPNWTVPELPL-DI--FHA  1339

Query  1175  SVVNIQKEIDRLN-----------EVA---KNLNESLIDLQELGKYEQYIKWPWYIWLGF  1220
             + +N+  EI+ L            E+A    N+N +L++L+ L + E Y+KWPWY+WL  
Sbjct  1340  TYLNLTGEINDLEFRSEKLHNTTVELAILIDNINNTLVNLEWLNRIETYVKWPWYVWL--  1397

Query  1221  IAGLIAIVMVTIML  1234
             + GL+ I  + I+L
Sbjct  1398  LIGLVVIFCIPILL  1411


>Q91AV1.1 RecName: Full=Spike glycoprotein; Short=S glycoprotein; AltName: 
Full=E2; AltName: Full=Peplomer protein; Flags: Precursor
Length=1383

 Score = 314 bits (805),  Expect = 3e-87, Method: Compositional matrix adjust.
 Identities = 228/749 (30%), Positives = 351/749 (47%), Gaps = 101/749 (13%)

Query  521   PATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQ  580
             P  + G    + +  + C  +   G  G G++T +N   L    +  D      A ++  
Sbjct  629   PKPLEGITDVSFMTLDVCTKYTIYGFKGEGIITLTNSSILAGVYYTSDSGQLL-AFKNVT  687

Query  581   TLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGS  640
             +  +  +TPCSF            S Q A +  D+      V +          + S  +
Sbjct  688   SGAVYSVTPCSF------------SEQAAYVNDDI------VGV----------ISSLSN  719

Query  641   NVFQTRAGCLIGAEHVNNSYECDIPI----GAGICASYQTQTNSPRRARSVASQSIIAYT  696
             + F           H N+   C  P+      G+C S      S     S   Q  IA T
Sbjct  720   STFNNTRELPGFFYHSNDGSNCTEPVLVYSNIGVCKS-----GSIGYVPSQYGQVKIAPT  774

Query  697   MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY  756
             ++            +I+IPTNF++S+ TE L +  T  SVDC  Y+C  ++ C  LL QY
Sbjct  775   VT-----------GNISIPTNFSMSIRTEYLQLYNTPVSVDCATYVCNGNSRCKQLLTQY  823

Query  757   GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGG--FNFSQILP----DPS  810
              + C  +  AL   A  +      +    ++  +   I  F G  +NF+ +L     DP+
Sbjct  824   TAACKTIESALQLSARLESVEVNSMLTISEEALQLATISSFNGDGYNFTNVLGASVYDPA  883

Query  811   KP---SKRSFIEDLLFNKVTLADAGFIKQ-YGDCLGDIAARDLICAQKFNGLTVLPPLLT  866
                   KRS IEDLLFNKV     G + + Y  C    +  DL+CAQ ++G+ VLP ++ 
Sbjct  884   SGRVVQKRSVIEDLLFNKVVTNGLGTVDEDYKRCSNGRSVADLVCAQYYSGVMVLPGVVD  943

Query  867   DEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ  926
              E +  Y+++L+ G    G T    AA  +PF+  +  R N + +  +VL  NQ+L+A  
Sbjct  944   AEKLHMYSASLIGGMALGGIT----AAAALPFSYAVQARLNYLALQTDVLQRNQQLLAES  999

Query  927   FNSAIGKIQDS--------------LSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGA  972
             FNSAIG I  +              L++ A AL K+Q+VVN    ALN L  QL  NF A
Sbjct  1000  FNSAIGNITSAFESVKEAISQTSKGLNTVAHALTKVQEVVNSQGSALNQLTVQLQHNFQA  1059

Query  973   ISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSEC  1032
             ISS ++DI SRLD + A+VQ+DRLITGRL +L  +V Q L +  E++AS  LA  K++EC
Sbjct  1060  ISSSIDDIYSRLDILSADVQVDRLITGRLSALNAFVAQTLTKYTEVQASRKLAQQKVNEC  1119

Query  1033  VLGQSKRVDFC-GKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFP-  1090
             V  QS+R  FC G G H+ S  Q+AP G++FLH   VP    N      +C +G+     
Sbjct  1120  VKSQSQRYGFCGGDGEHIFSLVQAAPQGLLFLHTVLVPGDFVNVLAIAGLCVNGEIALTL  1179

Query  1091  REGVFV--------SNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVV-IGIVNNTVYDPL  1141
             RE   V           T +FV+ R  +EP+  T  +     +C V  + + ++ + D +
Sbjct  1180  REPGLVLFTHELQTYTATEYFVSSRRMFEPRKPTVSDFVQIESCVVTYVNLTSDQLPDVI  1239

Query  1142  QPELDSFK--EELDKYFKNHTSPDVDL-----------GDISGINASVVNIQKEIDRLNE  1188
                +D  K  +E+     N T P + L           G+I+ +     +++   + L  
Sbjct  1240  PDYIDVNKTLDEILASLPNRTGPSLPLDVFNATYLNLTGEIADLEQRSESLRNTTEELRS  1299

Query  1189  VAKNLNESLIDLQELGKYEQYIKWPWYIW  1217
             +  N+N +L+DL+ L + E YIKWPW++W
Sbjct  1300  LINNINNTLVDLEWLNRVETYIKWPWWVW  1328



Lambda      K        H
   0.320    0.135    0.412 

Gapped
Lambda      K        H
   0.267   0.0410    0.140 

Effective search space used: 132091962288


  Database: Non-redundant UniProtKB/SwissProt sequences
    Posted date:  Jun 15, 2017  11:35 AM
  Number of letters in database: 175,696,908
  Number of sequences in database:  466,914



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40