page1
genome/
.fa
.gff
.gtf
.exon
.ss
*.ht2
transcriptome/
gtffiles/
*.gtf
merged.gtf
gff2gtf
extract_exons
extract_splice_sites
hisat2-build
bamfiles/
*.bam
ballgown/
sample1/
.gtf,*.ctab
sample2/
.gtf, *.ctab
rnareads/
*.fq.gz
hisat2
stringtie --merge
stringtie
stringtie -B