name        "mrtrans - protein to DNA alignment"
icon    "$BIRCH/dat/fasta/FASTAlogo.png"
tip    "Create a multiple alignment from DNA sequences, using a protein alignment as a guide."
var "in1"
    type        tempfile
    direction   in
    format      fasta
    save        true
var "dnafile"
    type        file
    label       "file of UNALIGNED DNA sequences"
    default     ""
panel
    var "Run"
        type        button
        label       "Run"
        shell       "(mrtrans.csh %in1% %DNAFILE%; $RM %in1%)&"
        close       true
    var "Help"
        type        button
        label       "Help"
        shell       "$BIRCH/script/chooseviewer.py $BIRCH/doc/fasta/mrtrans.txt"
        close       false