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394 ` BamMultiReader.o/ SamProgramChain.o/ SamReadGroupDictionary.o/ SamSequenceDictionary.o/ BamMultiReader_p.o/ BamRandomAccessController_p.o/ BamIndexFactory_p.o/ BamStandardIndex_p.o/ BamToolsIndex_p.o/ BamDeviceFactory_p.o/ ILocalIODevice_p.o/ RollingBuffer_p.o/ TcpSocketEngine_p.o/ TcpSocketEngine_unix_p.o/ SamFormatParser_p.o/ SamFormatPrinter_p.o/ SamHeaderValidator_p.o/ BamException_p.o/ BamAlignment.o/ 0 0 0 644 25688 ` ELF>\@@! 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ElemType&) [with ElemType = int]static bool BamTools::Algorithms::Sort::sort_helper(const BamTools::Algorithms::Sort::Order&, const ElemType&, const ElemType&) [with ElemType = std::__cxx11::basic_string]N8BamTools8Internal12IMultiMergerEN8BamTools8Internal11MultiMergerINS_10Algorithms4Sort8UnsortedEEEN8BamTools8Internal11MultiMergerINS_10Algorithms4Sort10ByPositionEEEN8BamTools8Internal11MultiMergerINS_10Algorithms4Sort6ByNameEEEGCC: (Ubuntu 5.4.0-6ubuntu1~16.04.9) 5.4.0 20160609zRx 0D X3l    DvBBB B(A0A8GPZ8A0A(B BBBP, rBB B(A0A8J@p 8A0A(B BBBB 0BAD G0l  AABB $9AAR XGA$@AAN jDA$@AAN jDA,wt B<DBBF A(D0 (A BBBA zPLRx P$\BBB B(A0A8D 8A0A(B BBBA Px\BBB B(A0A8D 8A0A(B BBBA HLBBE B(A0A8D`6 8A0A(B BBBA 4P,BBE B(A0A8I0 8A0A(B BBBH #E]PBBB B(A0A8G7 8A0A(B BBBA ,}AAGPO AAA 8 BAD G)  AABE #PpcBBE A(A0 (A BBBG A (T BJBA D&4XGBAA o ABJ ACB$;AAD rAAP8JBBB B(A0A8D 8A0A(B BBBA 0 hBAD P@G  AABA ,SBEA o ABA <_BBD A(J (A ABBH 40ZBAD Dpt  AABE 8LBBE A(D0o(D BBB4$KBBD A(G0m(D ABBPeBBB B(A0A8G9 8A0A(B 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HLLH|$@IL9tHl$`HH5HEHHD$`YLHHH|$`HH9tH|$ IL9tH<$IL9tE1H|$`HHH9tH|$ IL9tH<$IL9tHHH|$@IHL9uHH|$@IHL9tH|$`HH9uHGGbasic_string::_M_construct null not validsrc/api/internal/bam/BamRandomAccessController_p.cppcannot create index for unopened readerBamRandomAccessController::CreateIndexcould not create index of type: BamRandomAccessController::OpenIndexcould not load index data from file: could not find index file for:BamRandomAccessController::LocateIndexcannot jump if no index data availableHGSHHHFHHVHH[ 7O .;N<ex9dG8           P0Nl<2DRa279GATLgUSHHL'HHHVHHUHuHH[]A\HH;L9tHbasic_string::append: readercould not create index: could not open index file: BamRandomAccessControllercould not set region H=HH=HH5Hbool BamTools::Internal::BamRandomAccessController::LocateIndex(BamTools::Internal::BamReaderPrivate*, const BamTools::BamIndex::IndexType&)bool BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate*, const 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ELF>P@@PM !#'(*+-.013467=>@ACEGATUISHHdH%(HD$1HuHtH=@HL)HH$w8HUHHt[HuBH$HEHD$dH3%(uGH[]A\ÐHH1HHEH$HEHLHUA$HU@f.HGSHHHFHHVHH[Ðff.HGSHHHHHHH[ÐfDSHPHHdH%(HD$1HT$dH3%(u HH[SHPHHdH%(HD$1HT$dH3%(u HH[HG0H+G(HHHÐ@HG(Ðf.Hǐ@H@HHPHǐ@H@AUATIUSIHHXdH%(HD$H1=uH=u|HHHl$ HHLHHI$HH|$ HH9tH<$HH9tHD$HdH3%(ubHX[]A\A]@HHH5H=HH=H=HH51H=HHH|$ HIH9tLH<$HH9tHHAVAUATUISHLo(Ho0dH%(H$1I9LtH;HCH9tH(H9uI|$PMl$0ID$I$ID$Lu5H$dH3 %(9HĐ[]A\A]A^fI$HHHHHRHHLt$@H5LLl$ HLLH|$@IL9tLt$`H5LLLLH|$`IL9tH|$ IL9tH<$HH9t1H|$`IHL9tH|$ IL9tH<$HH9tHHHHH|$@IHL9u뺐AWAVIAUATUSHHdH%(H$1H\$`HH5Hl$@AHCHHD$`HEHH5HHD$@HHLH|$@HH9tH|$`HH9tH$dH3 %(DHĘ[]A\A]A^A_fDIHLHAuHHl$@HHEHH5HIHD$@*Lt$ HHLH|$@HH9tH\$`HH5HCHHD$`LHLH|$`HH9tH|$ IL9tH<$IL9H|$`HHH9tHH|$ IL9tH<$IL9tHHH|$@HHH9uHH|$@HIH9tLH|$`HH9tHH@AVAUHATLUSHHLHdH%(H$1t0H$dH3 %(HĐ[]A\A]A^LLd$@HID$HH5LIHD$@MLt$ HLLH|$@IL9tLd$`HH5ID$LHD$`LLHH|$`IL9tH|$ IL9tH<$IL9 HH<$IL9tHH|$@IHL9tHH|$ IL9uH|$`IHL9t@f.AVAUHATLUSHLHdH%(H$1t3H$dH3 %(HĐ[]A\A]A^f.LLd$@HID$HH5LIHD$@Lt$ 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Љ%$D$QD$RL$S T$U 1ɊL$T,T$VL$W 1ɉT$YL$XC T$ZDpLL$[  1ɊL$\T$]T$^L$_  ʉMIJ0t@HH9uLLLE1I9tLDfDHHML1HHD$D(D$H$HD$HLH)MHI9HD$E1L=HD$uaAƒHAH;T$D$tGHtHD$HHHHAD9$v3}@DtIȉfDHT$H<$AMtCILHIHtMLLL$E1HLHAUATUSHHHHdH%(H$1u2E1H$dH3 %(D~HĘ[]A\A]LLuEHHAtHHtHLtuƅ0yLueHHHHHRHHLl$@H5LLd$ HLLH|$@IL9tLl$`H5LLLHH|$`IL9tH|$ IL9tH<$HH9tH|$`IHL9tH|$ IL9tH<$HH9tHHH|$@IHL9uHH뿐AVAUATUISHHdH%(H$1u-H$dH3 %(HĐ[]A\A]A^@It$HHuHHl$@HHEHH5HIHD$@_Lt$ HHLH|$@HH9tHl$`HH5HEHHD$`LHLH|$`HH9tH|$ IL9tH<$IL9H|$`HHH9tH|$ IL9tH<$IL9tHHH|$@HHH9uHɐAWAVLAUATIUSLHdH%(H$1H$HHD$$A}@Iu(HHt$8$$$$$$$$E‰HcD$,\HD$@E1HD$ HD$PHD$0H$HD$H$HD$Ht$L$A}@$$$$$$$$E؉HHHH tfHH9uHHLHt$L$1$$Ɖ$  A}@t#ىډ ʁ% Ld$0HH|$ HLd$@JHt$@HD$H|$HHT$HH$&H|$@DŽ$L9tLd$`HID$HD$`HTHLH|$LH|$`IL9t$I]0I;]8Ht0HCHHH$HH$$C I]0H(I]0H$H;|$tHAD;|$,H$dH34%(H[]A\A]A^A_HT$H|$8HHHHHT$ H|$@HHH9tHHT$H$HH9uH|$`IHL9t@f.AWAVAUATUSHHHdH%(H$1LHLHHH{HLHH$dH3 %(uH[]A\A]A^A_HHHHIRHHLl$@H5LLt$`HLLHt$`L$IGLHHT$hH${HH+$H]H5LHl$ HLHH$IL9tH|$`IL9tH|$@IL9tL$H5LHLHH$IL9tH|$ HH9tH<$IL9t1rH$IHL9tH|$ HH9tH<$IL9tHHH$IHL9tH|$`IL9tH|$@IL9uH=HHHH{@f.AUATIUSHHdH%(H$1HLHHHHSH{H A1HHH$dH3 %(uHĘ[]A\A]HHHHHRHHLl$@H5LLd$ HLLH|$@IL9tLl$`H5LLLHH|$`IL9tH|$ IL9tH<$HH9t1H|$`IHL9tH|$ IL9tH<$HH9tHHH|$@IHL9uHH뿐AVAUIATUISH H_(Ho0dH%(HD$1H$HD$H9HD$1I;@HtHGHH3HHS}H|$H(H H9H|$t&HD$H9uHHLH(H|$H9uH$HHLjHIT$0I+T$(AH\$Y^HH)Hl$iH9DEH9tH;HCH9tH H9uH,$HtHHL$dH3 %(DuH []A\A]A^11`Hl$H$IH9tH;HCH9tH H9uH,$HtHLGGbasic_string::_M_construct null not validencountered error closing BAM file: cannot create index on unopened BAM filecannot seek on unopened BAM filecould not seek in BAM file: encountered error reading BAM alignment: BamReader::GetNextAlignmentCorecould not populate alignment data: could not open input stream: HGHHIHt1HHHHHTLHGSHHHFHHVHH[ATLgUSHHL'HHHVHHUHuHH[]A\HH;L9tH .;N: BamReader::CloseBamReader::CreateIndexcould not create index: could not locate index: BamReader::LocateIndexcould not open index: BamReader::OpenIndexBamReader::Seekcould not rewind: BamReader::Rewindcould not set region: 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validBgzfStream::Seek() - trying to seek on null IO deviceBgzfStream::ReadBlock() - trying to read from null IO devicecould not read data from blockBgzfStream::Read() - trying to read from null deviceafter deflate, remainder too largeBgzfStream::FlushBlock() - attempting to flush to null device bytes during flushing, but wrote BgzfStream::Write() - trying to write to null IO deviceBgzfStream::Write() - trying to write to non-writable IO deviceBgzfStream::Open() - unable to properly close previous IO deviceBgzfStream::Open() - unable to create IO device from filenamecould not open BGZF stream: BgzfStream::Open() - unable to create IO device from streamHGHHIHt1HHHHHTLHGSHHHFHHVHH[HSHHHHHCH9tHH[/] .;N9H}Im' LD3q8                    Id-                     GC< 4          .'Z 7YI*,[+6wATLgUSHHL'HHHVHHUHuHH[]A\HH;L9tHATUISHH0HdH%(HD$(1HHHHHH}LHH<$HH9tHD$(dH3%(u H0[]A\IHH<$HH9tLHH1.2.8zlib inflateInit failedBgzfStream::InflateBlockzlib inflate failedzlib inflateEnd failedunable to seek to 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Not required, but strongly recommended%s: __pos (which is %zu) > this->size() (which is %zu)Sort order (SO) missing. Not required, but strongly recommendedUSHGHHHHHHt HHHHH[]USH5H=HHHH5HH5H=wHH5HH5H=NHH5HH5H=%HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=XHH5HH5H=/HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=bHH5HH5H=9HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=lHH5HH5H=CHH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=vHH5HH5H=MHH5HH5H=$HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=WHH5HH5H=.HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=aHH5HH5H=8HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=HH5HH5H=kHH5HH=H=HH5H-HH5HHH5HHH5HHH5HHH5HH-H5H@HHHH-H5HHHHH-H5HHHH[]H* SAM header has errors: warnings:basic_string::appendInvalid group order (GO): Invalid sequence name (SN): Sequence length (LN): out of rangePreviousProgramID (PP): is not a known IDInvalid version (VN) format: basic_string::substrInvalid sort order (SO): Sequence name (SN): is not uniqueRead group ID (ID): Platform unit (PU): Program ID (ID): 0123456789@HDVNSOGO@SQASM5LNSNSPUR@RGDSFOIDKSLBPUPIDTPGSMCNPL@PGCLPNPP@COcoordinatequerynameunknownunsortednonequeryreferenceCAPILLARYHELICOSILLUMINAIONTORRENTLS454PACBIOSOLIDERROR: WARNING: ATLgUSHHL'HHHVHHUHuHH[]A\HH;L9tH .;NAVAUIATUISHHLsHCCHIt$L3HHHH+CH9w+HLHIT$I4$HH[]A\A]A^H=HH;I9tH :OAWAVAUATIUSHHHHHdH%(HD$81I;|$HtHwHGHHHWI|$H Ll$I|$HuIELHHUHD$ID$HPHhH)H)HL`~fHuH HL9uLHH|$IL9tHD$8dH3%(HH[]A\A]A^A_I$H)HH@H?H9dIHHI)HD$IMtHuMoLM/HHUM,$LL9t7f.HtHEHHEIuHIUI H L9uMl$HE H$H,$L9fHtH3HEHHEHHSH H I9uMl$I$L9t$fDH;HCH9tH L9uM,$MtLHD$M4$Il$HIMt$II)HHD$HH,$H6HH9II)HuHD$E1H|$IL9tHHH$H9HtH;HCH9tH H9u#HMLH/HLI9tH;HCH9tH H9uHMoH<$tJL94$LtH;HCH9tH H9$uMzHH MoHI?L9tE8M4}0Blf0Blf_j`kT\g      3     `k`"4HNY;B>_j%(etH>(hyHtAATIUSHHsLH{ HC0HkH9tHHHu[]A\AWAVAUATLoUSHH_HLfL6M%DH{ Lt#x*fDLHLt)x;HC1Ht>HLc(MHk M9MFMuLL)H=H=}HCHu@LIHt-LHtx6H(H1[]A\A]A^A_fDLL)HHMPL9l$HD$M}(HXLL9HFHIu H8E1@Hx HHC0HC HD$H0HHPHL$LAHHD$H@(H(H[]A\A]A^A_H\$f.HD$H9Xt  k   `  @     L  u       ` * @ [        '  T   `  @      @   h        ` !   T  c  x  x  p  h  `-/23  H    ; V x  s  &   # ) (/ 5 ; hA G M S &Y 5_ Je _k qq |w }                            % + 1 7 = C  J Q X %_ .f 9m ?t F{ L T ^ 1 " " "/ E M p       4- 4j   ]v   "J ("S\!/xc"[y" FL^l|  ( b  @  @LS ` P :Ms6ct#6v * 09 J 0- `O| B  +"%H"("+ At f `;o @f  /  !q  5    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