ConvertToSQLiteDialogImport BAM FileImport BAM FileSource URL:Source URL:InfoInfoReference:Reference:......<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p align="center" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:8pt; font-weight:600;">The SAM file does not contain the header. Please, choose the reference sequence.</span></p></body></html><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p align="center" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:8pt; font-weight:600;">The SAM file does not contain the header. Please, choose the reference sequence.</span></p></body></html><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p align="center" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:8pt; font-weight:600;">Index file (*.bai) is not available. Partial import is going to be slowed down.</span></p></body></html><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p align="center" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:8pt; font-weight:600;">Index file (*.bai) is not available. Partial import is going to be slowed down.</span></p></body></html><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p align="left" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">Input SAM file does not contain a header. Сhoose a file with reference sequences or references info will be generated.</span></p></body></html><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p align="left" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-weight:600;">Input SAM file does not contain a header. Сhoose a file with reference sequences or references info will be generated.</span></p></body></html><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p align="left" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:8pt; font-weight:600;">Index file (*.bai) is not available. Partial import is going to be slowed down.</span></p></body></html><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
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<p align="left" style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:8pt; font-weight:600;">Index file (*.bai) is not available. Partial import is going to be slowed down.</span></p></body></html>Select AllSelect AllDeselect AllDeselect AllInvert SelectionInvert SelectionImport unmapped readsImport unmapped readsDestination URL:Destination URL:Add to projectAdd to projectQObjectReference FileReference FileU2::BAM::BAMDbiPluginInvalid magic numberInvalid magic numberInvalid number of references: %1Invalid number of references: %1Invalid number of bins: %1Invalid number of bins: %1Invalid number of chunks: %1Invalid number of chunks: %1Invalid number of intervals: %1Invalid number of intervals: %1Can't read input. %1Can't read input. %1Unexpected end of fileUnexpected end of fileCan't write outputCan't write outputBAM format supportBAM format supportInterface for indexed read-only access to BAM filesInterface for indexed read-only access to BAM filesCan't initialize zlibCan't initialize zlibCan't read inputCan't read inputCan't decompress dataCan't decompress dataCan't compress dataCan't compress dataHard clip in the middle of cigarHard clip in the middle of cigarMisplaced soft clip in the cigar: must be preceded with hard clipMisplaced soft clip in the cigar: must be preceded with hard clipMisplaced soft clip in the cigar: must be succeeded with hard clipMisplaced soft clip in the cigar: must be succeeded with hard clipMisplaced soft clip in the cigar: can't be in the middle of the stringMisplaced soft clip in the cigar: can't be in the middle of the stringNo match or skip operation between adjacent in/del/skip operationsNo match or skip operation between adjacent in/del/skip operationsCIGAR can't start or end with padding operatorCIGAR can't start or end with padding operatorPadding operator must be located between real operationsPadding operator must be located between real operationsCIGAR must contain at least one real operation (ins/del/match/skip)CIGAR must contain at least one real operation (ins/del/match/skip)Assembly nameAssembly nameLengthLengthURIURI%1 file info%1 file infoProperty nameProperty nameValueValueUnsortedUnsortedUnknownUnknownCoordinateCoordinateQuery nameQuery nameURLURLFormat versionFormat versionSorting orderSorting orderSequencing centerSequencing centerDescriptionDescriptionDateDateLibraryLibraryProgramsProgramsPredicted median insert sizePredicted median insert sizePlatform/technologyPlatform/technologyPlatform unitPlatform unitSampleSampleRead groups:Read groups:NameNameVersionVersionCommandCommandPrevious IDPrevious IDPrograms:Programs:Please select the file with the reference sequencePlease select the file with the reference sequencePlease select assemblies to be importedPlease select assemblies to be importedDestination URL is not specifiedDestination URL is not specifiedDestination URL must point to a local fileDestination URL must point to a local fileDestination URL folder has not write permissionsDestination URL folder has not write permissionsThere is opened view with destination file.
Close it or choose different fileThere is opened view with destination file.
Close it or choose different fileDestination folder '%1' is not writable, please choose different destination URLDestination folder '%1' is not writable, please choose different destination URLDestination file already exists.
To overwrite the file, press 'Replace'.
To append data to existing file press 'Append'.Destination file already exists.
To overwrite the file, press 'Replace'.
To append data to existing file press 'Append'.ReplaceReplaceAppendAppendCancelCancelDestination file '%1' cannot be removedDestination file '%1' cannot be removedDestination UGENEDB FileDestination UGENEDB FileUGENEDB Files (*.ugenedb);;All Files (*)UGENEDB Files (*.ugenedb);;All Files (*)The iteration has no next elementThe iteration has no next elementTask was cancelledTask was cancelledInvalid DBI stateInvalid DBI stateURL is not specifiedURL is not specifiedNon-local files are not supportedNon-local files are not supportedCan't open file '%1'Can't open file '%1'Can't open index databaseCan't open index databaseOperation was cancelledOperation was cancelledNo such folder: %1No such folder: %1The specified object is not an assemblyThe specified object is not an assemblyThe specified object is not an assembly readThe specified object is not an assembly readInvalid read position: %1Invalid read position: %1Invalid read length: %1Invalid read length: %1Invalid mate reference id: %1Invalid mate reference id: %1Invalid mate position: %1Invalid mate position: %1Invalid template length of a sigle-fragment template: %1Invalid template length of a sigle-fragment template: %1Invalid cigar operation code: %1Invalid cigar operation code: %1Invalid block size: %1Invalid block size: %1Invalid reference id: %1Invalid reference id: %1Invalid header text size: %1Invalid header text size: %1Invalid reference name length: %1Invalid reference name length: %1Invalid reference name: %1Invalid reference name: %1Invalid reference sequence length: %1Invalid reference sequence length: %1Invalid header line: %1Invalid header line: %1Invalid header record tag: %1Invalid header record tag: %1Invalid header field: %1Invalid header field: %1Invalid header field tag: %1Invalid header field tag: %1Invalid %1-%2 value: %3Invalid %1-%2 value: %3Duplicate header field: %1Duplicate header field: %1HD record without VN fieldHD record without VN fieldInvalid HD-SO value: %1Invalid HD-SO value: %1Unmatched SQ-SN value: %1Unmatched SQ-SN value: %1SQ record without SN fieldSQ record without SN fieldSQ-LN value mismatch: %1 != %2SQ-LN value mismatch: %1 != %2Invalid SQ-LN value: %1Invalid SQ-LN value: %1SQ record without LN fieldSQ record without LN fieldInvalid SQ-M5 value: %1Invalid SQ-M5 value: %1Invalid RG-PI field value: %1Invalid RG-PI field value: %1Invalid PG-PP field value: %1Invalid PG-PP field value: %1Unexpected empty stringUnexpected empty stringNot enough fields in one of alignmentsNot enough fields in one of alignmentsInvalid query template name: %1Invalid query template name: %1Invalid FLAG value: %1Invalid FLAG value: %1Undefined reference name: %1Undefined reference name: %1Invalid read position value: %1Invalid read position value: %1Invalid mapping quality value: %1Invalid mapping quality value: %1Invalid mapping quality: %1Invalid mapping quality: %1Invalid cigar value: %1Invalid cigar value: %1Invalid mate reference name: %1Invalid mate reference name: %1Undefined mate reference name: %1Undefined mate reference name: %1Invalid mate position value: %1Invalid mate position value: %1Invalid template length value: %1Invalid template length value: %1Invalid template length of a single-fragment template: %1Invalid template length of a single-fragment template: %1Invalid sequence: %1Invalid sequence: %1Can't build index for: %1Can't build index for: %1Can't load index file for '%1'Can't load index file for '%1'Can't read header from file '%1'Can't read header from file '%1'Invalid samtools DBI stateInvalid samtools DBI stateObject not foundObject not foundU2::BAM::BAMImporterBAM/SAM file importBAM/SAM file importBAM files importer is used to convert conventional BAM and SAM files into UGENE database format. Having BAM or SAM file converted into UGENE DB format you get an fast and efficient interface to your data with an option to change the contentBAM files importer is used to convert conventional BAM and SAM files into UGENE database format. Having BAM or SAM file converted into UGENE DB format you get an fast and efficient interface to your data with an option to change the contentU2::BAM::BAMImporterTaskBAM/SAM file import: %1BAM/SAM file import: %1Can't create a temporary databaseCan't create a temporary databaseSAM cannot be converted to BAM: neither reference nor header in SAM file is presentSAM cannot be converted to BAM: neither reference nor header in SAM file is presentFailed to get load task for : %1Failed to get load task for : %1U2::BAM::ConvertToSQLiteDialogImportImportCancelCancelImport SAM FileImport SAM FileImport BAM FileImport BAM FileU2::BAM::ConvertToSQLiteTaskConvert BAM to UGENE database (%1)Convert BAM to UGENE database (%1)Converting assembly from %1 to %2 startedConverting assembly from %1 to %2 startedConverting assembly from %1 to %2 cancelledConverting assembly from %1 to %2 cancelledConverting assembly from %1 to %2 failed: %3Converting assembly from %1 to %2 failed: %3Packing reads for assembly '%1' (%2 of %3)Packing reads for assembly '%1' (%2 of %3)Importing assembly '%1' (%2 of %3)Importing assembly '%1' (%2 of %3)Successfully imported %1 reads for assembly '%2' (total %3 reads imported)Successfully imported %1 reads for assembly '%2' (total %3 reads imported)Importing unmapped readsImporting unmapped readsNo bam index given, preparing sequential importNo bam index given, preparing sequential importImporting reads sequentiallyImporting reads sequentiallyWarning: incorrect maxProw == %1, probably packing was not done! Attribute was not setWarning: incorrect maxProw == %1, probably packing was not done! Attribute was not setU2::BAM::LoadInfoTaskLoad BAM infoLoad BAM infoCan't open file '%1'Can't open file '%1'Loading BAM info for file '%1' failed: %2Loading BAM info for file '%1' failed: %2Can not copy the '%1' file to '%2'Can not copy the '%1' file to '%2'Converting SAM to BAMConverting SAM to BAMSorting BAMSorting BAMCoping sorted BAMCoping sorted BAMCreating BAM indexCreating BAM indexUnknown reference sequence format. Only FASTA is supportedUnknown reference sequence format. Only FASTA is supportedThe detected reference sequence format is '%1'. Only FASTA is supportedThe detected reference sequence format is '%1'. Only FASTA is supportedU2::BAMFormatBAM FileBAM File