############################################################################# # Makefile for building: libsmith_waterman.so.1.0.0 # Generated by qmake (3.0) (Qt 5.5.1) # Project: smith_waterman.pro # Template: lib ############################################################################# MAKEFILE = Makefile.Release ####### Compiler, tools and options CC = gcc CXX = g++ DEFINES = -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.29.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=29 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/home/birch/BIRCH/local/pkg/ugene-1.29.0/share/ugene/data\" -DQT_DLL -DNDEBUG -DPLUGIN_ID=\"smith_waterman\" -DSW2_BUILD_WITH_SSE2 -DSW2_BUILD_WITH_OPENCL -DOPENCL_SUPPORT -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_SCRIPT_LIB -DQT_NETWORK_LIB -DQT_XML_LIB -DQT_CORE_LIB CFLAGS = -m64 -pipe -O2 -msse2 -D_REENTRANT -Wall -W -fPIC $(DEFINES) CXXFLAGS = -m64 -pipe -msse2 -O2 -D_REENTRANT -Wall -W -fPIC $(DEFINES) INCPATH = -I. -Isrc -I_tmp -I../../include -I../../corelibs/U2View/_tmp -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWebKit -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtScript -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -I_tmp/moc/release -I_tmp/ui -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 QMAKE = /usr/lib/x86_64-linux-gnu/qt5/bin/qmake DEL_FILE = rm -f CHK_DIR_EXISTS= test -d MKDIR = mkdir -p COPY = cp -f COPY_FILE = cp -f COPY_DIR = cp -f -R INSTALL_FILE = install -m 644 -p INSTALL_PROGRAM = install -m 755 -p INSTALL_DIR = cp -f -R DEL_FILE = rm -f SYMLINK = ln -f -s DEL_DIR = rmdir MOVE = mv -f TAR = tar -cf COMPRESS = gzip -9f DISTNAME = smith_waterman1.0.0 DISTDIR = /home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/_tmp/obj/release/smith_waterman1.0.0 LINK = g++ LFLAGS = -m64 -Wl,-O1 -Wl,-rpath-link,/usr/lib/x86_64-linux-gnu -shared -Wl,-soname,libsmith_waterman.so.1 LIBS = $(SUBLIBS) -L/usr/X11R6/lib64 -L../../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Designer -lQt5WebKit -lQt5Svg -lQt5Widgets -lQt5Gui -lQt5Script -lQt5Network -lQt5Xml -lQt5Core -lpthread -lGL AR = ar cqs RANLIB = SED = sed STRIP = strip ####### Output directory OBJECTS_DIR = _tmp/obj/release/ ####### Files SOURCES = src/PairAlignSequences.cpp \ src/SmithWatermanAlgorithm.cpp \ src/SmithWatermanAlgorithmSSE2.cpp \ src/SWAlgorithmPlugin.cpp \ src/SWAlgorithmTask.cpp \ src/SmithWatermanAlgorithmCUDA.cpp \ src/SmithWatermanAlgorithmOPENCL.cpp \ src/sw_cuda_cpp.cpp \ src/SWTaskFactory.cpp \ src/SmithWatermanTests.cpp \ src/SWWorker.cpp \ src/SWQuery.cpp \ src/PairwiseAlignmentSmithWatermanGUIExtension.cpp _tmp/rcc/qrc_smith_waterman.cpp \ _tmp/moc/release/moc_SWAlgorithmPlugin.cpp \ _tmp/moc/release/moc_SWAlgorithmTask.cpp \ _tmp/moc/release/moc_SmithWatermanTests.cpp \ _tmp/moc/release/moc_SWWorker.cpp \ _tmp/moc/release/moc_SWQuery.cpp \ _tmp/moc/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.cpp OBJECTS = _tmp/obj/release/PairAlignSequences.o \ _tmp/obj/release/SmithWatermanAlgorithm.o \ _tmp/obj/release/SmithWatermanAlgorithmSSE2.o \ _tmp/obj/release/SWAlgorithmPlugin.o \ _tmp/obj/release/SWAlgorithmTask.o \ _tmp/obj/release/SmithWatermanAlgorithmCUDA.o \ _tmp/obj/release/SmithWatermanAlgorithmOPENCL.o \ _tmp/obj/release/sw_cuda_cpp.o \ _tmp/obj/release/SWTaskFactory.o \ _tmp/obj/release/SmithWatermanTests.o \ _tmp/obj/release/SWWorker.o \ _tmp/obj/release/SWQuery.o \ _tmp/obj/release/PairwiseAlignmentSmithWatermanGUIExtension.o \ _tmp/obj/release/qrc_smith_waterman.o \ _tmp/obj/release/moc_SWAlgorithmPlugin.o \ _tmp/obj/release/moc_SWAlgorithmTask.o \ _tmp/obj/release/moc_SmithWatermanTests.o \ _tmp/obj/release/moc_SWWorker.o \ _tmp/obj/release/moc_SWQuery.o \ _tmp/obj/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.o DIST = /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/spec_pre.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/linux.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/sanitize.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/gcc-base.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/gcc-base-unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/g++-base.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/g++-unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/qconfig.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_bootstrap_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_concurrent.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_concurrent_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_core.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_core_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_dbus.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_dbus_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_eglfs_device_lib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_gui.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_gui_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_network.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_network_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_opengl.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_opengl_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_openglextensions.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_openglextensions_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_platformsupport_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_printsupport.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_printsupport_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_qml.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_qmltest.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_quick.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_quickwidgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_script.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_scripttools.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_sql.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_sql_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_svg.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_testlib.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_testlib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_webkit.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_webkitwidgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_widgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_widgets_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xcb_qpa_lib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xml.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xml_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt_functions.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt_config.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64/qmake.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/spec_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exclusive_builds.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/default_pre.prf \ ../../ugene_version.pri \ ../../ugene_globals.pri \ ../../ugene_lib_common.pri \ ../../ugene_plugin_descriptor.pri \ ../../ugene_plugin_common.pri \ smith_waterman.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/resolve_config.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exclusive_builds_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/default_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/build_pass.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/unix/thread.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/resources.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/moc.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/unix/opengl.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/uic.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/warn_on.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/testcase_targets.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exceptions.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/yacc.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/lex.prf \ smith_waterman.pro src/PairAlignSequences.h \ src/SmithWatermanAlgorithm.h \ src/SmithWatermanAlgorithmSSE2.h \ src/SWAlgorithmPlugin.h \ src/SWAlgorithmTask.h \ src/SmithWatermanAlgorithmCUDA.h \ src/SmithWatermanAlgorithmOPENCL.h \ src/sw_cuda_cpp.h \ src/SWTaskFactory.h \ src/SmithWatermanTests.h \ src/SWWorker.h \ src/SWQuery.h \ src/PairwiseAlignmentSmithWatermanGUIExtension.h src/PairAlignSequences.cpp \ src/SmithWatermanAlgorithm.cpp \ src/SmithWatermanAlgorithmSSE2.cpp \ src/SWAlgorithmPlugin.cpp \ src/SWAlgorithmTask.cpp \ src/SmithWatermanAlgorithmCUDA.cpp \ src/SmithWatermanAlgorithmOPENCL.cpp \ src/sw_cuda_cpp.cpp \ src/SWTaskFactory.cpp \ src/SmithWatermanTests.cpp \ src/SWWorker.cpp \ src/SWQuery.cpp \ src/PairwiseAlignmentSmithWatermanGUIExtension.cpp QMAKE_TARGET = smith_waterman DESTDIR = ../../_release/plugins/#avoid trailing-slash linebreak TARGET = libsmith_waterman.so.1.0.0 TARGETA = ../../_release/plugins/libsmith_waterman.a TARGET0 = libsmith_waterman.so TARGETD = libsmith_waterman.so.1.0.0 TARGET1 = libsmith_waterman.so.1 TARGET2 = libsmith_waterman.so.1.0 first: all ####### Implicit rules .SUFFIXES: .o .c .cpp .cc .cxx .C .cpp.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .cc.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .cxx.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .C.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .c.o: $(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<" ####### Build rules ../../_release/plugins/$(TARGET): _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h $(OBJECTS) $(SUBLIBS) $(OBJCOMP) @test -d ../../_release/plugins/ || mkdir -p ../../_release/plugins/ -$(DEL_FILE) $(TARGET) $(TARGET0) $(TARGET1) $(TARGET2) $(LINK) $(LFLAGS) -o $(TARGET) $(OBJECTS) $(LIBS) $(OBJCOMP) -ln -s $(TARGET) $(TARGET0) -ln -s $(TARGET) $(TARGET1) -ln -s $(TARGET) $(TARGET2) -$(DEL_FILE) ../../_release/plugins/$(TARGET) -$(MOVE) $(TARGET) ../../_release/plugins/ -$(DEL_FILE) ../../_release/plugins/$(TARGET0) -$(DEL_FILE) ../../_release/plugins/$(TARGET1) -$(DEL_FILE) ../../_release/plugins/$(TARGET2) -$(MOVE) $(TARGET0) ../../_release/plugins/ -$(MOVE) $(TARGET1) ../../_release/plugins/ -$(MOVE) $(TARGET2) ../../_release/plugins/ staticlib: $(TARGETA) $(TARGETA): _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h $(OBJECTS) $(OBJCOMP) -$(DEL_FILE) $(TARGETA) $(AR) $(TARGETA) $(OBJECTS) qmake: FORCE @$(QMAKE) INSTALL_PREFIX=/home/birch/BIRCH/local/pkg/ugene-1.29.0 -o Makefile.Release smith_waterman.pro qmake_all: FORCE all: Makefile.Release ../../_release/plugins/$(TARGET) dist: distdir FORCE (cd `dirname $(DISTDIR)` && $(TAR) $(DISTNAME).tar $(DISTNAME) && $(COMPRESS) $(DISTNAME).tar) && $(MOVE) `dirname $(DISTDIR)`/$(DISTNAME).tar.gz . && $(DEL_FILE) -r $(DISTDIR) distdir: FORCE @test -d $(DISTDIR) || mkdir -p $(DISTDIR) $(COPY_FILE) --parents $(DIST) $(DISTDIR)/ $(COPY_FILE) --parents smith_waterman.qrc $(DISTDIR)/ $(COPY_FILE) --parents src/PairAlignSequences.h src/SmithWatermanAlgorithm.h src/SmithWatermanAlgorithmSSE2.h src/SWAlgorithmPlugin.h src/SWAlgorithmTask.h src/SmithWatermanAlgorithmCUDA.h src/SmithWatermanAlgorithmOPENCL.h src/sw_cuda_cpp.h src/SWTaskFactory.h src/SmithWatermanTests.h src/SWWorker.h src/SWQuery.h src/PairwiseAlignmentSmithWatermanGUIExtension.h $(DISTDIR)/ $(COPY_FILE) --parents src/PairAlignSequences.cpp src/SmithWatermanAlgorithm.cpp src/SmithWatermanAlgorithmSSE2.cpp src/SWAlgorithmPlugin.cpp src/SWAlgorithmTask.cpp src/SmithWatermanAlgorithmCUDA.cpp src/SmithWatermanAlgorithmOPENCL.cpp src/sw_cuda_cpp.cpp src/SWTaskFactory.cpp src/SmithWatermanTests.cpp src/SWWorker.cpp src/SWQuery.cpp src/PairwiseAlignmentSmithWatermanGUIExtension.cpp $(DISTDIR)/ $(COPY_FILE) --parents src/PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.ui $(DISTDIR)/ $(COPY_FILE) --parents transl/english.ts transl/russian.ts $(DISTDIR)/ clean: compiler_clean -$(DEL_FILE) $(OBJECTS) -$(DEL_FILE) *~ core *.core distclean: clean -$(DEL_FILE) ../../_release/plugins/$(TARGET) -$(DEL_FILE) ../../_release/plugins/$(TARGET0) ../../_release/plugins/$(TARGET1) ../../_release/plugins/$(TARGET2) $(TARGETA) -$(DEL_FILE) Makefile.Release ####### Sub-libraries mocclean: compiler_moc_header_clean compiler_moc_source_clean mocables: compiler_moc_header_make_all compiler_moc_source_make_all check: first compiler_rcc_make_all: _tmp/rcc/qrc_smith_waterman.cpp compiler_rcc_clean: -$(DEL_FILE) _tmp/rcc/qrc_smith_waterman.cpp _tmp/rcc/qrc_smith_waterman.cpp: smith_waterman.qrc \ src/sw_opencl.cl /usr/lib/x86_64-linux-gnu/qt5/bin/rcc -name smith_waterman smith_waterman.qrc -o _tmp/rcc/qrc_smith_waterman.cpp compiler_moc_header_make_all: _tmp/moc/release/moc_SWAlgorithmPlugin.cpp _tmp/moc/release/moc_SWAlgorithmTask.cpp _tmp/moc/release/moc_SmithWatermanTests.cpp _tmp/moc/release/moc_SWWorker.cpp _tmp/moc/release/moc_SWQuery.cpp _tmp/moc/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.cpp compiler_moc_header_clean: -$(DEL_FILE) _tmp/moc/release/moc_SWAlgorithmPlugin.cpp _tmp/moc/release/moc_SWAlgorithmTask.cpp _tmp/moc/release/moc_SmithWatermanTests.cpp _tmp/moc/release/moc_SWWorker.cpp _tmp/moc/release/moc_SWQuery.cpp _tmp/moc/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.cpp _tmp/moc/release/moc_SWAlgorithmPlugin.cpp: ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h \ ../../include/U2View/SmithWatermanDialog.h \ ../../corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ src/SWAlgorithmPlugin.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/SWAlgorithmPlugin.h -o _tmp/moc/release/moc_SWAlgorithmPlugin.cpp _tmp/moc/release/moc_SWAlgorithmTask.cpp: ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ src/SWAlgorithmTask.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/SWAlgorithmTask.h -o _tmp/moc/release/moc_SWAlgorithmTask.cpp _tmp/moc/release/moc_SmithWatermanTests.cpp: ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ src/SmithWatermanTests.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/SmithWatermanTests.h -o _tmp/moc/release/moc_SmithWatermanTests.cpp _tmp/moc/release/moc_SWWorker.cpp: ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Designer/DelegateEditors.h \ ../../corelibs/U2Designer/src/DelegateEditors.h \ ../../include/U2Designer/URLLineEdit.h \ ../../corelibs/U2Designer/src/support/URLLineEdit.h \ ../../corelibs/U2Designer/src/PropertyWidget.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Algorithm/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h \ src/SWWorker.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/SWWorker.h -o _tmp/moc/release/moc_SWWorker.cpp _tmp/moc/release/moc_SWQuery.cpp: ../../include/U2Lang/QDScheme.h \ ../../corelibs/U2Lang/src/model/QDScheme.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/GObjectTypes.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/QueryDesignerRegistry.h \ ../../corelibs/U2Lang/src/model/QueryDesignerRegistry.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Algorithm/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h \ ../../include/U2Designer/DelegateEditors.h \ ../../corelibs/U2Designer/src/DelegateEditors.h \ ../../include/U2Designer/URLLineEdit.h \ ../../corelibs/U2Designer/src/support/URLLineEdit.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Designer/src/PropertyWidget.h \ src/SWQuery.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/SWQuery.h -o _tmp/moc/release/moc_SWQuery.cpp _tmp/moc/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.cpp: src/SWAlgorithmTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h \ ../../include/U2View/AlignmentAlgorithmGUIExtension.h \ ../../corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.h \ src/PairwiseAlignmentSmithWatermanGUIExtension.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins/smith_waterman/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/PairwiseAlignmentSmithWatermanGUIExtension.h -o _tmp/moc/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.cpp compiler_moc_source_make_all: compiler_moc_source_clean: compiler_uic_make_all: _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h compiler_uic_clean: -$(DEL_FILE) _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h: src/PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.ui /usr/lib/x86_64-linux-gnu/qt5/bin/uic src/PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.ui -o _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h compiler_yacc_decl_make_all: compiler_yacc_decl_clean: compiler_yacc_impl_make_all: compiler_yacc_impl_clean: compiler_lex_make_all: compiler_lex_clean: compiler_clean: compiler_rcc_clean compiler_moc_header_clean compiler_uic_clean ####### Compile _tmp/obj/release/PairAlignSequences.o: src/PairAlignSequences.cpp src/PairAlignSequences.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/PairAlignSequences.o src/PairAlignSequences.cpp _tmp/obj/release/SmithWatermanAlgorithm.o: src/SmithWatermanAlgorithm.cpp src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SmithWatermanAlgorithm.o src/SmithWatermanAlgorithm.cpp _tmp/obj/release/SmithWatermanAlgorithmSSE2.o: src/SmithWatermanAlgorithmSSE2.cpp src/SmithWatermanAlgorithmSSE2.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SmithWatermanAlgorithmSSE2.o src/SmithWatermanAlgorithmSSE2.cpp _tmp/obj/release/SWAlgorithmPlugin.o: src/SWAlgorithmPlugin.cpp src/SWAlgorithmPlugin.h \ ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h \ ../../include/U2View/SmithWatermanDialog.h \ ../../corelibs/U2View/src/util_smith_waterman/SmithWatermanDialog.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ src/SWAlgorithmTask.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ src/SWTaskFactory.h \ ../../include/U2Algorithm/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h \ src/PairwiseAlignmentSmithWatermanGUIExtension.h \ _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h \ ../../include/U2View/AlignmentAlgorithmGUIExtension.h \ ../../corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.h \ src/SmithWatermanTests.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/GTest.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h \ src/SWQuery.h \ ../../include/U2Lang/QDScheme.h \ ../../corelibs/U2Lang/src/model/QDScheme.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/QueryDesignerRegistry.h \ ../../corelibs/U2Lang/src/model/QueryDesignerRegistry.h \ ../../include/U2Designer/DelegateEditors.h \ ../../corelibs/U2Designer/src/DelegateEditors.h \ ../../include/U2Designer/URLLineEdit.h \ ../../corelibs/U2Designer/src/support/URLLineEdit.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Designer/src/PropertyWidget.h \ src/SWWorker.h \ ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ ../../include/U2Gui/GUIUtils.h \ ../../corelibs/U2Gui/src/util/GUIUtils.h \ ../../corelibs/U2Gui/src/util/U2FileDialog.h \ ../../include/U2View/AnnotatedDNAView.h \ ../../corelibs/U2View/src/ov_sequence/AnnotatedDNAView.h \ ../../include/U2View/ADVConstants.h \ ../../corelibs/U2View/src/ov_sequence/ADVConstants.h \ ../../include/U2View/MSAEditor.h \ ../../corelibs/U2View/src/ov_msa/MSAEditor.h \ ../../corelibs/U2View/src/ov_msa/PhyTrees/MSAEditorTreeManager.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../corelibs/U2View/src/ov_msa/MaEditor.h \ ../../corelibs/U2View/src/ov_msa/MsaEditorWgt.h \ ../../corelibs/U2View/src/ov_msa/view_rendering/MaEditorWgt.h \ ../../corelibs/U2View/src/ov_msa/view_rendering/MaEditorUtils.h \ ../../include/U2Gui/OptionsPanel.h \ ../../corelibs/U2Gui/src/options_panel/OptionsPanel.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h \ ../../include/U2Test/XMLTestFormat.h \ ../../include/U2Test/GTestFrameworkComponents.h \ ../../corelibs/U2Test/src/GTestFrameworkComponents.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Algorithm/CudaGpuRegistry.h \ ../../corelibs/U2Algorithm/src/registry/CudaGpuRegistry.h \ ../../include/U2Algorithm/OpenCLGpuRegistry.h \ ../../corelibs/U2Algorithm/src/registry/OpenCLGpuRegistry.h \ ../../include/U2Algorithm/OpenCLHelper.h \ ../../corelibs/U2Algorithm/src/util_gpu/opencl/OpenCLHelper.h \ ../../include/opencl/legacy/cl.h \ ../../include/opencl/legacy/cl_platform.h \ ../../include/U2View/ADVSequenceObjectContext.h \ ../../corelibs/U2View/src/ov_sequence/ADVSequenceObjectContext.h \ ../../corelibs/U2View/src/ov_sequence/SequenceObjectContext.h \ ../../include/U2View/ADVUtils.h \ ../../corelibs/U2View/src/ov_sequence/ADVUtils.h \ ../../include/U2Algorithm/SmithWatermanTaskFactoryRegistry.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SWAlgorithmPlugin.o src/SWAlgorithmPlugin.cpp _tmp/obj/release/SWAlgorithmTask.o: src/SWAlgorithmTask.cpp src/SWAlgorithmTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ src/SmithWatermanAlgorithmCUDA.h \ src/SmithWatermanAlgorithmSSE2.h \ src/SmithWatermanAlgorithmOPENCL.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Algorithm/OpenCLGpuRegistry.h \ ../../corelibs/U2Algorithm/src/registry/OpenCLGpuRegistry.h \ ../../include/U2Algorithm/OpenCLHelper.h \ ../../corelibs/U2Algorithm/src/util_gpu/opencl/OpenCLHelper.h \ ../../include/opencl/legacy/cl.h \ ../../include/opencl/legacy/cl_platform.h \ src/sw_cuda_cpp.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Counter.h \ ../../corelibs/U2Core/src/globals/Counter.h \ ../../include/U2Core/Timer.h \ ../../corelibs/U2Core/src/globals/Timer.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ ../../include/U2Core/U2SequenceDbi.h \ ../../corelibs/U2Core/src/dbi/U2SequenceDbi.h \ ../../include/U2Algorithm/CudaGpuRegistry.h \ ../../corelibs/U2Algorithm/src/registry/CudaGpuRegistry.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SWAlgorithmTask.o src/SWAlgorithmTask.cpp _tmp/obj/release/SmithWatermanAlgorithmCUDA.o: src/SmithWatermanAlgorithmCUDA.cpp src/SmithWatermanAlgorithmCUDA.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ src/sw_cuda_cpp.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SmithWatermanAlgorithmCUDA.o src/SmithWatermanAlgorithmCUDA.cpp _tmp/obj/release/SmithWatermanAlgorithmOPENCL.o: src/SmithWatermanAlgorithmOPENCL.cpp src/SmithWatermanAlgorithmOPENCL.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Algorithm/OpenCLGpuRegistry.h \ ../../corelibs/U2Algorithm/src/registry/OpenCLGpuRegistry.h \ ../../include/U2Algorithm/OpenCLHelper.h \ ../../corelibs/U2Algorithm/src/util_gpu/opencl/OpenCLHelper.h \ ../../include/U2Core/global.h \ ../../include/opencl/legacy/cl.h \ ../../include/opencl/legacy/cl_platform.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Algorithm/OpenCLUtils.h \ ../../corelibs/U2Algorithm/src/util_gpu/opencl/OpenCLUtils.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SmithWatermanAlgorithmOPENCL.o src/SmithWatermanAlgorithmOPENCL.cpp _tmp/obj/release/sw_cuda_cpp.o: src/sw_cuda_cpp.cpp ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ src/sw_cuda_cpp.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/sw_cuda_cpp.o src/sw_cuda_cpp.cpp _tmp/obj/release/SWTaskFactory.o: src/SWTaskFactory.cpp src/SWTaskFactory.h \ ../../include/U2Algorithm/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ src/SWAlgorithmTask.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/UserApplicationsSettings.h \ ../../corelibs/U2Core/src/globals/UserApplicationsSettings.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Algorithm/SWResultFilterRegistry.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SWTaskFactory.o src/SWTaskFactory.cpp _tmp/obj/release/SmithWatermanTests.o: src/SmithWatermanTests.cpp src/SmithWatermanTests.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Algorithm/SmithWatermanTaskFactoryRegistry.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.h \ ../../include/U2Algorithm/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SmithWatermanTests.o src/SmithWatermanTests.cpp _tmp/obj/release/SWWorker.o: src/SWWorker.cpp ../../include/U2Algorithm/SWResultFilterRegistry.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Algorithm/SmithWatermanTaskFactoryRegistry.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.h \ ../../include/U2Algorithm/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/DocumentUtils.h \ ../../corelibs/U2Core/src/models/DocumentUtils.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/FailTask.h \ ../../corelibs/U2Core/src/tasks/FailTask.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/GenbankFeatures.h \ ../../corelibs/U2Core/src/util/GenbankFeatures.h \ ../../include/U2Core/IOAdapterUtils.h \ ../../corelibs/U2Core/src/util/IOAdapterUtils.h \ ../../include/U2Core/IOAdapter.h \ ../../corelibs/U2Core/src/io/IOAdapter.h \ ../../include/U2Core/L10n.h \ ../../corelibs/U2Core/src/globals/L10n.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/MSAUtils.h \ ../../corelibs/U2Core/src/util/MSAUtils.h \ ../../include/U2Core/DocumentModel.h \ ../../include/U2Core/MultiTask.h \ ../../corelibs/U2Core/src/tasks/MultiTask.h \ ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/TaskSignalMapper.h \ ../../corelibs/U2Core/src/tasks/TaskSignalMapper.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ ../../include/U2Designer/DelegateEditors.h \ ../../corelibs/U2Designer/src/DelegateEditors.h \ ../../include/U2Designer/URLLineEdit.h \ ../../corelibs/U2Designer/src/support/URLLineEdit.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Designer/src/PropertyWidget.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ ../../include/U2Lang/ActorPrototypeRegistry.h \ ../../corelibs/U2Lang/src/model/ActorPrototypeRegistry.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/BaseActorCategories.h \ ../../corelibs/U2Lang/src/library/BaseActorCategories.h \ ../../include/U2Lang/BaseAttributes.h \ ../../corelibs/U2Lang/src/library/BaseAttributes.h \ ../../include/U2Lang/BasePorts.h \ ../../corelibs/U2Lang/src/library/BasePorts.h \ ../../include/U2Lang/BaseSlots.h \ ../../corelibs/U2Lang/src/library/BaseSlots.h \ ../../include/U2Lang/BaseTypes.h \ ../../corelibs/U2Lang/src/library/BaseTypes.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/WorkflowEnv.h \ ../../corelibs/U2Lang/src/model/WorkflowEnv.h \ ../../include/U2Lang/ExternalToolCfg.h \ ../../corelibs/U2Lang/src/model/ExternalToolCfg.h \ ../../include/U2Lang/SchemaActorsRegistry.h \ ../../corelibs/U2Lang/src/model/SchemaActorsRegistry.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ src/SWWorker.h \ ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ ../../include/U2Algorithm/SmithWatermanSettings.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SWWorker.o src/SWWorker.cpp _tmp/obj/release/SWQuery.o: src/SWQuery.cpp src/SWQuery.h \ ../../include/U2Lang/QDScheme.h \ ../../corelibs/U2Lang/src/model/QDScheme.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/GObjectTypes.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/QueryDesignerRegistry.h \ ../../corelibs/U2Lang/src/model/QueryDesignerRegistry.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Algorithm/SmithWatermanTaskFactory.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactory.h \ ../../include/U2Designer/DelegateEditors.h \ ../../corelibs/U2Designer/src/DelegateEditors.h \ ../../include/U2Designer/URLLineEdit.h \ ../../corelibs/U2Designer/src/support/URLLineEdit.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Designer/src/PropertyWidget.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/TaskSignalMapper.h \ ../../corelibs/U2Core/src/tasks/TaskSignalMapper.h \ ../../include/U2Core/FailTask.h \ ../../corelibs/U2Core/src/tasks/FailTask.h \ ../../include/U2Core/L10n.h \ ../../corelibs/U2Core/src/globals/L10n.h \ ../../include/U2Algorithm/SmithWatermanTaskFactoryRegistry.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanTaskFactoryRegistry.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h \ ../../include/U2Algorithm/SWResultFilterRegistry.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SWResultFilterRegistry.h \ ../../include/U2Lang/BaseTypes.h \ ../../corelibs/U2Lang/src/library/BaseTypes.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/SWQuery.o src/SWQuery.cpp _tmp/obj/release/PairwiseAlignmentSmithWatermanGUIExtension.o: src/PairwiseAlignmentSmithWatermanGUIExtension.cpp src/PairwiseAlignmentSmithWatermanGUIExtension.h \ src/SWAlgorithmTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/SequenceWalkerTask.h \ ../../corelibs/U2Core/src/tasks/SequenceWalkerTask.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Algorithm/SmithWatermanSettings.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanSettings.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Algorithm/SmithWatermanReportCallback.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanReportCallback.h \ ../../include/U2Algorithm/SmithWatermanResult.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResult.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AnnotationTableObject.h \ ../../corelibs/U2Core/src/gobjects/AnnotationTableObject.h \ ../../include/U2Core/Annotation.h \ ../../corelibs/U2Core/src/datatype/Annotation.h \ ../../include/U2Core/AnnotationGroup.h \ ../../corelibs/U2Core/src/datatype/AnnotationGroup.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Algorithm/SmithWatermanResultFilters.h \ ../../corelibs/U2Algorithm/src/smith_waterman/SmithWatermanResultFilters.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ src/SmithWatermanAlgorithm.h \ src/PairAlignSequences.h \ _tmp/ui/ui_PairwiseAlignmentSmithWatermanOptionsPanelMainWidget.h \ ../../include/U2View/AlignmentAlgorithmGUIExtension.h \ ../../corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/U2AlphabetUtils.h \ ../../corelibs/U2Core/src/util/U2AlphabetUtils.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/TextUtils.h \ ../../corelibs/U2Core/src/util/TextUtils.h \ ../../include/U2Core/Timer.h \ ../../corelibs/U2Core/src/globals/Timer.h \ ../../include/U2Core/Counter.h \ ../../corelibs/U2Core/src/globals/Counter.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/PairwiseAlignmentSmithWatermanGUIExtension.o src/PairwiseAlignmentSmithWatermanGUIExtension.cpp _tmp/obj/release/qrc_smith_waterman.o: _tmp/rcc/qrc_smith_waterman.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/qrc_smith_waterman.o _tmp/rcc/qrc_smith_waterman.cpp _tmp/obj/release/moc_SWAlgorithmPlugin.o: _tmp/moc/release/moc_SWAlgorithmPlugin.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/moc_SWAlgorithmPlugin.o _tmp/moc/release/moc_SWAlgorithmPlugin.cpp _tmp/obj/release/moc_SWAlgorithmTask.o: _tmp/moc/release/moc_SWAlgorithmTask.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/moc_SWAlgorithmTask.o _tmp/moc/release/moc_SWAlgorithmTask.cpp _tmp/obj/release/moc_SmithWatermanTests.o: _tmp/moc/release/moc_SmithWatermanTests.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/moc_SmithWatermanTests.o _tmp/moc/release/moc_SmithWatermanTests.cpp _tmp/obj/release/moc_SWWorker.o: _tmp/moc/release/moc_SWWorker.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/moc_SWWorker.o _tmp/moc/release/moc_SWWorker.cpp _tmp/obj/release/moc_SWQuery.o: _tmp/moc/release/moc_SWQuery.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/moc_SWQuery.o _tmp/moc/release/moc_SWQuery.cpp _tmp/obj/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.o: _tmp/moc/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.o _tmp/moc/release/moc_PairwiseAlignmentSmithWatermanGUIExtension.cpp ####### Install install_target: first FORCE @test -d $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins || mkdir -p $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins -$(INSTALL_PROGRAM) ../../_release/plugins/$(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET) -$(STRIP) --strip-unneeded $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET) -$(SYMLINK) $(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET0) -$(SYMLINK) $(TARGET) 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