############################################################################# # Makefile for building: libkalignd.so.1.0.0 # Generated by qmake (3.0) (Qt 5.5.1) # Project: kalign.pro # Template: lib ############################################################################# MAKEFILE = Makefile.Debug ####### Compiler, tools and options CC = gcc CXX = g++ DEFINES = -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.29.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=29 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/home/birch/BIRCH/local/pkg/ugene-1.29.0/share/ugene/data\" -DQT_DLL -D_DEBUG -DPLUGIN_ID=\"kalignd\" -DQT_WEBKIT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_SCRIPT_LIB -DQT_NETWORK_LIB -DQT_XML_LIB -DQT_CORE_LIB CFLAGS = -m64 -pipe -g -D_REENTRANT -w -fPIC $(DEFINES) CXXFLAGS = -m64 -pipe -g -D_REENTRANT -w -fPIC $(DEFINES) INCPATH = -I. -Isrc -I_tmp -I../../include -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWebKit -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtScript -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -I_tmp/moc/debug -I_tmp/ui -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 QMAKE = /usr/lib/x86_64-linux-gnu/qt5/bin/qmake DEL_FILE = rm -f CHK_DIR_EXISTS= test -d MKDIR = mkdir -p COPY = cp -f COPY_FILE = cp -f COPY_DIR = cp -f -R INSTALL_FILE = install -m 644 -p INSTALL_PROGRAM = install -m 755 -p INSTALL_DIR = cp -f -R DEL_FILE = rm -f SYMLINK = ln -f -s DEL_DIR = rmdir MOVE = mv -f TAR = tar -cf COMPRESS = gzip -9f DISTNAME = kalignd1.0.0 DISTDIR = /home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/_tmp/obj/debug/kalignd1.0.0 LINK = g++ LFLAGS = -m64 -Wl,-rpath-link,/usr/lib/x86_64-linux-gnu -shared -Wl,-soname,libkalignd.so.1 LIBS = $(SUBLIBS) -L/usr/X11R6/lib64 -lqscored -L../../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Viewd -lU2Testd -lU2Langd -lU2Designerd -lQt5WebKit -lQt5Svg -lQt5Widgets -lQt5Gui -lQt5Script -lQt5Network -lQt5Xml -lQt5Core -lpthread -lGL AR = ar cqs RANLIB = SED = sed STRIP = strip ####### Output directory OBJECTS_DIR = _tmp/obj/debug/ ####### Files SOURCES = src/KalignAdapter.cpp \ src/KalignDialogController.cpp \ src/KalignException.cpp \ src/KalignPlugin.cpp \ src/KalignTask.cpp \ src/KalignUtils.cpp \ src/KalignWorker.cpp \ src/TaskLocalStorage.cpp \ src/kalign_tests/KalignTests.cpp \ src/kalign2/kalign2_context.c \ src/kalign2/kalign2_distance_calculation.c \ src/kalign2/kalign2_dp.c \ src/kalign2/kalign2_input.c \ src/kalign2/kalign2_main.c \ src/kalign2/kalign2_mem.c \ src/kalign2/kalign2_inferface.c \ src/kalign2/kalign2_misc.c \ src/kalign2/kalign2_tree.c \ src/kalign2/kalign2_profile.c \ src/kalign2/kalign2_alignment_types.c \ src/kalign2/kalign2_feature.c \ src/kalign2/kalign2_hirschberg.c \ src/kalign2/kalign2_advanced_gaps.c \ src/kalign2/kalign2_hirschberg_dna.c \ src/kalign2/kalign2_output.c \ src/kalign2/kalign2_string_matching.c \ src/kalign2/kalign2_profile_alignment.c \ src/PairwiseAlignmentHirschbergTaskFactory.cpp \ src/PairwiseAlignmentHirschbergGUIExtensionFactory.cpp \ src/PairwiseAlignmentHirschbergTask.cpp _tmp/rcc/qrc_kalign.cpp \ _tmp/moc/debug/moc_KalignAdapter.cpp \ _tmp/moc/debug/moc_KalignDialogController.cpp \ _tmp/moc/debug/moc_KalignPlugin.cpp \ _tmp/moc/debug/moc_KalignTask.cpp \ _tmp/moc/debug/moc_KalignWorker.cpp \ _tmp/moc/debug/moc_KalignTests.cpp \ _tmp/moc/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.cpp OBJECTS = _tmp/obj/debug/KalignAdapter.o \ _tmp/obj/debug/KalignDialogController.o \ _tmp/obj/debug/KalignException.o \ _tmp/obj/debug/KalignPlugin.o \ _tmp/obj/debug/KalignTask.o \ _tmp/obj/debug/KalignUtils.o \ _tmp/obj/debug/KalignWorker.o \ _tmp/obj/debug/TaskLocalStorage.o \ _tmp/obj/debug/KalignTests.o \ _tmp/obj/debug/kalign2_context.o \ _tmp/obj/debug/kalign2_distance_calculation.o \ _tmp/obj/debug/kalign2_dp.o \ _tmp/obj/debug/kalign2_input.o \ _tmp/obj/debug/kalign2_main.o \ _tmp/obj/debug/kalign2_mem.o \ _tmp/obj/debug/kalign2_inferface.o \ _tmp/obj/debug/kalign2_misc.o \ _tmp/obj/debug/kalign2_tree.o \ _tmp/obj/debug/kalign2_profile.o \ _tmp/obj/debug/kalign2_alignment_types.o \ _tmp/obj/debug/kalign2_feature.o \ _tmp/obj/debug/kalign2_hirschberg.o \ _tmp/obj/debug/kalign2_advanced_gaps.o \ _tmp/obj/debug/kalign2_hirschberg_dna.o \ _tmp/obj/debug/kalign2_output.o \ _tmp/obj/debug/kalign2_string_matching.o \ _tmp/obj/debug/kalign2_profile_alignment.o \ _tmp/obj/debug/PairwiseAlignmentHirschbergTaskFactory.o \ _tmp/obj/debug/PairwiseAlignmentHirschbergGUIExtensionFactory.o \ _tmp/obj/debug/PairwiseAlignmentHirschbergTask.o \ _tmp/obj/debug/qrc_kalign.o \ _tmp/obj/debug/moc_KalignAdapter.o \ _tmp/obj/debug/moc_KalignDialogController.o \ _tmp/obj/debug/moc_KalignPlugin.o \ _tmp/obj/debug/moc_KalignTask.o \ _tmp/obj/debug/moc_KalignWorker.o \ _tmp/obj/debug/moc_KalignTests.o \ _tmp/obj/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.o DIST = /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/spec_pre.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/linux.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/sanitize.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/gcc-base.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/gcc-base-unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/g++-base.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/g++-unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/qconfig.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_bootstrap_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_concurrent.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_concurrent_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_core.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_core_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_dbus.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_dbus_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_eglfs_device_lib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_gui.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_gui_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_network.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_network_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_opengl.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_opengl_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_openglextensions.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_openglextensions_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_platformsupport_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_printsupport.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_printsupport_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_qml.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_qmltest.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_quick.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_quickwidgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_script.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_scripttools.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_sql.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_sql_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_svg.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_testlib.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_testlib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_webkit.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_webkitwidgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_widgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_widgets_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xcb_qpa_lib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xml.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xml_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt_functions.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt_config.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64/qmake.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/spec_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exclusive_builds.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/default_pre.prf \ ../../ugene_version.pri \ ../../ugene_globals.pri \ ../../ugene_lib_common.pri \ ../../ugene_plugin_descriptor.pri \ ../../ugene_plugin_common.pri \ kalign.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/resolve_config.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exclusive_builds_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/default_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/build_pass.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/unix/thread.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/resources.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/moc.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/unix/opengl.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/uic.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/warn_off.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/testcase_targets.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exceptions.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/yacc.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/lex.prf \ kalign.pro src/KalignAdapter.h \ src/KalignDialogController.h \ src/KalignPlugin.h \ src/KalignConstants.h \ src/KalignException.h \ src/KalignTask.h \ src/KalignUtils.h \ src/KalignWorker.h \ src/TaskLocalStorage.h \ src/kalign_tests/KalignTests.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2.h \ src/kalign2/kalign2_advanced_gaps.h \ src/kalign2/kalign2_feature.h \ src/kalign2/kalign2_hirschberg.h \ src/kalign2/kalign2_hirschberg_dna.h \ src/kalign2/kalign2_input.h \ src/kalign2/kalign2_output.h \ src/kalign2/kalign2_profile_alignment.h \ src/PairwiseAlignmentHirschbergTaskFactory.h \ src/PairwiseAlignmentHirschbergGUIExtensionFactory.h \ src/PairwiseAlignmentHirschbergTask.h src/KalignAdapter.cpp \ src/KalignDialogController.cpp \ src/KalignException.cpp \ src/KalignPlugin.cpp \ src/KalignTask.cpp \ src/KalignUtils.cpp \ src/KalignWorker.cpp \ src/TaskLocalStorage.cpp \ src/kalign_tests/KalignTests.cpp \ src/kalign2/kalign2_context.c \ src/kalign2/kalign2_distance_calculation.c \ src/kalign2/kalign2_dp.c \ src/kalign2/kalign2_input.c \ src/kalign2/kalign2_main.c \ src/kalign2/kalign2_mem.c \ src/kalign2/kalign2_inferface.c \ src/kalign2/kalign2_misc.c \ src/kalign2/kalign2_tree.c \ src/kalign2/kalign2_profile.c \ src/kalign2/kalign2_alignment_types.c \ src/kalign2/kalign2_feature.c \ src/kalign2/kalign2_hirschberg.c \ src/kalign2/kalign2_advanced_gaps.c \ src/kalign2/kalign2_hirschberg_dna.c \ src/kalign2/kalign2_output.c \ src/kalign2/kalign2_string_matching.c \ src/kalign2/kalign2_profile_alignment.c \ src/PairwiseAlignmentHirschbergTaskFactory.cpp \ src/PairwiseAlignmentHirschbergGUIExtensionFactory.cpp \ src/PairwiseAlignmentHirschbergTask.cpp QMAKE_TARGET = kalignd DESTDIR = ../../_debug/plugins/#avoid trailing-slash linebreak TARGET = libkalignd.so.1.0.0 TARGETA = ../../_debug/plugins/libkalignd.a TARGET0 = libkalignd.so TARGETD = libkalignd.so.1.0.0 TARGET1 = libkalignd.so.1 TARGET2 = libkalignd.so.1.0 first: all ####### Implicit rules .SUFFIXES: .o .c .cpp .cc .cxx .C .cpp.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .cc.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .cxx.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .C.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .c.o: $(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<" ####### Build rules ../../_debug/plugins/$(TARGET): _tmp/ui/ui_KalignDialog.h _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h $(OBJECTS) $(SUBLIBS) $(OBJCOMP) @test -d ../../_debug/plugins/ || mkdir -p ../../_debug/plugins/ -$(DEL_FILE) $(TARGET) $(TARGET0) $(TARGET1) $(TARGET2) $(LINK) $(LFLAGS) -o $(TARGET) $(OBJECTS) $(LIBS) $(OBJCOMP) -ln -s $(TARGET) $(TARGET0) -ln -s $(TARGET) $(TARGET1) -ln -s $(TARGET) $(TARGET2) -$(DEL_FILE) ../../_debug/plugins/$(TARGET) -$(MOVE) $(TARGET) ../../_debug/plugins/ -$(DEL_FILE) ../../_debug/plugins/$(TARGET0) -$(DEL_FILE) ../../_debug/plugins/$(TARGET1) -$(DEL_FILE) ../../_debug/plugins/$(TARGET2) -$(MOVE) $(TARGET0) ../../_debug/plugins/ -$(MOVE) $(TARGET1) ../../_debug/plugins/ -$(MOVE) $(TARGET2) ../../_debug/plugins/ staticlib: $(TARGETA) $(TARGETA): _tmp/ui/ui_KalignDialog.h _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h $(OBJECTS) $(OBJCOMP) -$(DEL_FILE) $(TARGETA) $(AR) $(TARGETA) $(OBJECTS) qmake: FORCE @$(QMAKE) INSTALL_PREFIX=/home/birch/BIRCH/local/pkg/ugene-1.29.0 -o Makefile.Debug kalign.pro qmake_all: FORCE all: Makefile.Debug ../../_debug/plugins/$(TARGET) dist: distdir FORCE (cd `dirname $(DISTDIR)` && $(TAR) $(DISTNAME).tar $(DISTNAME) && $(COMPRESS) $(DISTNAME).tar) && $(MOVE) `dirname $(DISTDIR)`/$(DISTNAME).tar.gz . && $(DEL_FILE) -r $(DISTDIR) distdir: FORCE @test -d $(DISTDIR) || mkdir -p $(DISTDIR) $(COPY_FILE) --parents $(DIST) $(DISTDIR)/ $(COPY_FILE) --parents kalign.qrc $(DISTDIR)/ $(COPY_FILE) --parents src/KalignAdapter.h src/KalignDialogController.h src/KalignPlugin.h src/KalignConstants.h src/KalignException.h src/KalignTask.h src/KalignUtils.h src/KalignWorker.h src/TaskLocalStorage.h src/kalign_tests/KalignTests.h src/kalign2/kalign2_context.h src/kalign2/kalign2.h src/kalign2/kalign2_advanced_gaps.h src/kalign2/kalign2_feature.h src/kalign2/kalign2_hirschberg.h src/kalign2/kalign2_hirschberg_dna.h src/kalign2/kalign2_input.h src/kalign2/kalign2_output.h src/kalign2/kalign2_profile_alignment.h src/PairwiseAlignmentHirschbergTaskFactory.h src/PairwiseAlignmentHirschbergGUIExtensionFactory.h src/PairwiseAlignmentHirschbergTask.h $(DISTDIR)/ $(COPY_FILE) --parents src/KalignAdapter.cpp src/KalignDialogController.cpp src/KalignException.cpp src/KalignPlugin.cpp src/KalignTask.cpp src/KalignUtils.cpp src/KalignWorker.cpp src/TaskLocalStorage.cpp src/kalign_tests/KalignTests.cpp src/kalign2/kalign2_context.c src/kalign2/kalign2_distance_calculation.c src/kalign2/kalign2_dp.c src/kalign2/kalign2_input.c src/kalign2/kalign2_main.c src/kalign2/kalign2_mem.c src/kalign2/kalign2_inferface.c src/kalign2/kalign2_misc.c src/kalign2/kalign2_tree.c src/kalign2/kalign2_profile.c src/kalign2/kalign2_alignment_types.c src/kalign2/kalign2_feature.c src/kalign2/kalign2_hirschberg.c src/kalign2/kalign2_advanced_gaps.c src/kalign2/kalign2_hirschberg_dna.c src/kalign2/kalign2_output.c src/kalign2/kalign2_string_matching.c src/kalign2/kalign2_profile_alignment.c src/PairwiseAlignmentHirschbergTaskFactory.cpp src/PairwiseAlignmentHirschbergGUIExtensionFactory.cpp src/PairwiseAlignmentHirschbergTask.cpp $(DISTDIR)/ $(COPY_FILE) --parents src/KalignDialog.ui src/PairwiseAlignmentHirschbergOptionsPanelMainWidget.ui $(DISTDIR)/ $(COPY_FILE) --parents transl/english.ts transl/russian.ts $(DISTDIR)/ clean: compiler_clean -$(DEL_FILE) $(OBJECTS) -$(DEL_FILE) *~ core *.core distclean: clean -$(DEL_FILE) ../../_debug/plugins/$(TARGET) -$(DEL_FILE) ../../_debug/plugins/$(TARGET0) ../../_debug/plugins/$(TARGET1) ../../_debug/plugins/$(TARGET2) $(TARGETA) -$(DEL_FILE) Makefile.Debug ####### Sub-libraries mocclean: compiler_moc_header_clean compiler_moc_source_clean mocables: compiler_moc_header_make_all compiler_moc_source_make_all check: first compiler_rcc_make_all: _tmp/rcc/qrc_kalign.cpp compiler_rcc_clean: -$(DEL_FILE) _tmp/rcc/qrc_kalign.cpp _tmp/rcc/qrc_kalign.cpp: kalign.qrc \ images/kalign_16.png /usr/lib/x86_64-linux-gnu/qt5/bin/rcc -name kalign kalign.qrc -o _tmp/rcc/qrc_kalign.cpp compiler_moc_header_make_all: _tmp/moc/debug/moc_KalignAdapter.cpp _tmp/moc/debug/moc_KalignDialogController.cpp _tmp/moc/debug/moc_KalignPlugin.cpp _tmp/moc/debug/moc_KalignTask.cpp _tmp/moc/debug/moc_KalignWorker.cpp _tmp/moc/debug/moc_KalignTests.cpp _tmp/moc/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.cpp compiler_moc_header_clean: -$(DEL_FILE) _tmp/moc/debug/moc_KalignAdapter.cpp _tmp/moc/debug/moc_KalignDialogController.cpp _tmp/moc/debug/moc_KalignPlugin.cpp _tmp/moc/debug/moc_KalignTask.cpp _tmp/moc/debug/moc_KalignWorker.cpp _tmp/moc/debug/moc_KalignTests.cpp _tmp/moc/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.cpp _tmp/moc/debug/moc_KalignAdapter.cpp: ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ src/KalignAdapter.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/KalignAdapter.h -o _tmp/moc/debug/moc_KalignAdapter.cpp _tmp/moc/debug/moc_KalignDialogController.cpp: ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ _tmp/ui/ui_KalignDialog.h \ src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/KalignDialogController.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/KalignDialogController.h -o _tmp/moc/debug/moc_KalignDialogController.cpp _tmp/moc/debug/moc_KalignPlugin.cpp: ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ src/KalignPlugin.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/KalignPlugin.h -o _tmp/moc/debug/moc_KalignPlugin.cpp _tmp/moc/debug/moc_KalignTask.cpp: ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/KalignTask.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/KalignTask.h -o _tmp/moc/debug/moc_KalignTask.cpp _tmp/moc/debug/moc_KalignWorker.cpp: ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ src/KalignWorker.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/KalignWorker.h -o _tmp/moc/debug/moc_KalignWorker.cpp _tmp/moc/debug/moc_KalignTests.cpp: ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h \ src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/kalign_tests/KalignTests.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/kalign_tests/KalignTests.h -o _tmp/moc/debug/moc_KalignTests.cpp _tmp/moc/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.cpp: _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h \ ../../include/U2View/AlignmentAlgorithmGUIExtension.h \ ../../corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ src/PairwiseAlignmentHirschbergGUIExtensionFactory.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/kalign/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/PairwiseAlignmentHirschbergGUIExtensionFactory.h -o _tmp/moc/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.cpp compiler_moc_source_make_all: compiler_moc_source_clean: compiler_uic_make_all: _tmp/ui/ui_KalignDialog.h _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h compiler_uic_clean: -$(DEL_FILE) _tmp/ui/ui_KalignDialog.h _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h _tmp/ui/ui_KalignDialog.h: src/KalignDialog.ui /usr/lib/x86_64-linux-gnu/qt5/bin/uic src/KalignDialog.ui -o _tmp/ui/ui_KalignDialog.h _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h: src/PairwiseAlignmentHirschbergOptionsPanelMainWidget.ui /usr/lib/x86_64-linux-gnu/qt5/bin/uic src/PairwiseAlignmentHirschbergOptionsPanelMainWidget.ui -o _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h compiler_yacc_decl_make_all: compiler_yacc_decl_clean: compiler_yacc_impl_make_all: compiler_yacc_impl_clean: compiler_lex_make_all: compiler_lex_clean: compiler_clean: compiler_rcc_clean compiler_moc_header_clean compiler_uic_clean ####### Compile _tmp/obj/debug/KalignAdapter.o: src/KalignAdapter.cpp src/KalignAdapter.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ src/KalignException.h \ src/KalignConstants.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/KalignAdapter.o src/KalignAdapter.cpp _tmp/obj/debug/KalignDialogController.o: src/KalignDialogController.cpp ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/BaseDocumentFormats.h \ ../../corelibs/U2Core/src/globals/BaseDocumentFormats.h \ ../../include/U2Core/global.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/DocumentUtils.h \ ../../corelibs/U2Core/src/models/DocumentUtils.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/GUrlUtils.h \ ../../corelibs/U2Core/src/util/GUrlUtils.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ ../../include/U2Gui/HelpButton.h \ ../../corelibs/U2Gui/src/util/HelpButton.h \ ../../include/U2Gui/LastUsedDirHelper.h \ ../../corelibs/U2Gui/src/util/LastUsedDirHelper.h \ ../../include/U2Gui/SaveDocumentController.h \ ../../corelibs/U2Gui/src/util/SaveDocumentController.h \ ../../include/U2Core/DocumentModel.h \ ../../include/U2Gui/U2FileDialog.h \ ../../corelibs/U2Gui/src/util/U2FileDialog.h \ src/KalignDialogController.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ _tmp/ui/ui_KalignDialog.h \ src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/KalignDialogController.o src/KalignDialogController.cpp _tmp/obj/debug/KalignException.o: src/KalignException.cpp src/KalignException.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/KalignException.o src/KalignException.cpp _tmp/obj/debug/KalignPlugin.o: src/KalignPlugin.cpp ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/BaseDocumentFormats.h \ ../../corelibs/U2Core/src/globals/BaseDocumentFormats.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/IOAdapter.h \ ../../corelibs/U2Core/src/io/IOAdapter.h \ ../../include/U2Core/IOAdapterUtils.h \ ../../corelibs/U2Core/src/util/IOAdapterUtils.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/QObjectScopedPointer.h \ ../../corelibs/U2Core/src/util/QObjectScopedPointer.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/TaskSignalMapper.h \ ../../corelibs/U2Core/src/tasks/TaskSignalMapper.h \ ../../include/U2Gui/GUIUtils.h \ ../../corelibs/U2Gui/src/util/GUIUtils.h \ ../../corelibs/U2Gui/src/util/U2FileDialog.h \ ../../include/U2Gui/LastUsedDirHelper.h \ ../../corelibs/U2Gui/src/util/LastUsedDirHelper.h \ ../../include/U2Gui/Notification.h \ ../../corelibs/U2Gui/src/Notification.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ ../../corelibs/U2Gui/src/NotificationWidget.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h \ ../../include/U2Gui/ToolsMenu.h \ ../../corelibs/U2Gui/src/ToolsMenu.h \ ../../include/U2Lang/WorkflowSettings.h \ ../../corelibs/U2Lang/src/support/WorkflowSettings.h \ ../../include/U2Test/GTestFrameworkComponents.h \ ../../corelibs/U2Test/src/GTestFrameworkComponents.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2View/MSAEditor.h \ ../../corelibs/U2View/src/ov_msa/MSAEditor.h \ ../../corelibs/U2View/src/ov_msa/PhyTrees/MSAEditorTreeManager.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../corelibs/U2View/src/ov_msa/MaEditor.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2View/src/ov_msa/MsaEditorWgt.h \ ../../corelibs/U2View/src/ov_msa/view_rendering/MaEditorWgt.h \ ../../corelibs/U2View/src/ov_msa/view_rendering/MaEditorUtils.h \ ../../include/U2View/MaEditorFactory.h \ ../../corelibs/U2View/src/ov_msa/MaEditorFactory.h \ src/KalignConstants.h \ src/KalignDialogController.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ _tmp/ui/ui_KalignDialog.h \ src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/KalignPlugin.h \ src/KalignWorker.h \ ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ src/PairwiseAlignmentHirschbergGUIExtensionFactory.h \ _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h \ ../../include/U2View/AlignmentAlgorithmGUIExtension.h \ ../../corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.h \ src/PairwiseAlignmentHirschbergTask.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ src/PairwiseAlignmentHirschbergTaskFactory.h \ src/kalign_tests/KalignTests.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/KalignPlugin.o src/KalignPlugin.cpp _tmp/obj/debug/KalignTask.o: src/KalignTask.cpp src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/KalignAdapter.h \ src/KalignConstants.h \ src/kalign2/kalign2_context.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/StateLockableDataModel.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/IOAdapter.h \ ../../corelibs/U2Core/src/io/IOAdapter.h \ ../../include/U2Core/IOAdapterUtils.h \ ../../corelibs/U2Core/src/util/IOAdapterUtils.h \ ../../include/U2Core/Counter.h \ ../../corelibs/U2Core/src/globals/Counter.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/ProjectModel.h \ ../../corelibs/U2Core/src/models/ProjectModel.h \ ../../include/U2Core/AddDocumentTask.h \ ../../corelibs/U2Core/src/tasks/AddDocumentTask.h \ ../../include/U2Core/LoadDocumentTask.h \ ../../corelibs/U2Core/src/tasks/LoadDocumentTask.h \ ../../include/U2Core/GObjectReference.h \ ../../include/U2Core/DocumentProviderTask.h \ ../../corelibs/U2Core/src/tasks/DocumentProviderTask.h \ ../../include/U2Core/MSAUtils.h \ ../../corelibs/U2Core/src/util/MSAUtils.h \ ../../include/U2Core/BaseDocumentFormats.h \ ../../corelibs/U2Core/src/globals/BaseDocumentFormats.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Lang/WorkflowSettings.h \ ../../corelibs/U2Lang/src/support/WorkflowSettings.h \ ../../include/U2Lang/SimpleWorkflowTask.h \ ../../corelibs/U2Lang/src/support/SimpleWorkflowTask.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/WorkflowIOTasks.h \ ../../corelibs/U2Lang/src/support/WorkflowIOTasks.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Gui/OpenViewTask.h \ ../../corelibs/U2Gui/src/OpenViewTask.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/KalignTask.o src/KalignTask.cpp _tmp/obj/debug/KalignUtils.o: src/KalignUtils.cpp src/KalignUtils.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ src/kalign2/kalign2_context.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/KalignUtils.o src/KalignUtils.cpp _tmp/obj/debug/KalignWorker.o: src/KalignWorker.cpp ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Designer/DelegateEditors.h \ ../../corelibs/U2Designer/src/DelegateEditors.h \ ../../include/U2Designer/URLLineEdit.h \ ../../corelibs/U2Designer/src/support/URLLineEdit.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Designer/src/PropertyWidget.h \ ../../include/U2Lang/ActorPrototypeRegistry.h \ ../../corelibs/U2Lang/src/model/ActorPrototypeRegistry.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/BaseActorCategories.h \ ../../corelibs/U2Lang/src/library/BaseActorCategories.h \ ../../include/U2Lang/BasePorts.h \ ../../corelibs/U2Lang/src/library/BasePorts.h \ ../../include/U2Lang/BaseSlots.h \ ../../corelibs/U2Lang/src/library/BaseSlots.h \ ../../include/U2Lang/BaseTypes.h \ ../../corelibs/U2Lang/src/library/BaseTypes.h \ ../../include/U2Lang/CoreLibConstants.h \ ../../corelibs/U2Lang/src/support/CoreLibConstants.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/NoFailTaskWrapper.h \ ../../corelibs/U2Lang/src/support/NoFailTaskWrapper.h \ ../../include/U2Lang/WorkflowEnv.h \ ../../corelibs/U2Lang/src/model/WorkflowEnv.h \ ../../include/U2Lang/ExternalToolCfg.h \ ../../corelibs/U2Lang/src/model/ExternalToolCfg.h \ ../../include/U2Lang/SchemaActorsRegistry.h \ ../../corelibs/U2Lang/src/model/SchemaActorsRegistry.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ src/KalignConstants.h \ src/KalignDialogController.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ _tmp/ui/ui_KalignDialog.h \ src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ src/KalignWorker.h \ ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ src/TaskLocalStorage.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/KalignWorker.o src/KalignWorker.cpp _tmp/obj/debug/TaskLocalStorage.o: src/TaskLocalStorage.cpp src/TaskLocalStorage.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/TaskLocalStorage.o src/TaskLocalStorage.cpp _tmp/obj/debug/KalignTests.o: src/kalign_tests/KalignTests.cpp ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/BaseDocumentFormats.h \ ../../corelibs/U2Core/src/globals/BaseDocumentFormats.h \ ../../include/U2Core/global.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/IOAdapter.h \ ../../corelibs/U2Core/src/io/IOAdapter.h \ ../../include/U2Core/IOAdapterUtils.h \ ../../corelibs/U2Core/src/util/IOAdapterUtils.h \ ../../include/U2Core/LoadDocumentTask.h \ ../../corelibs/U2Core/src/tasks/LoadDocumentTask.h \ ../../include/U2Core/GObjectReference.h \ ../../include/U2Core/DocumentProviderTask.h \ ../../corelibs/U2Core/src/tasks/DocumentProviderTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentImporter.h \ ../../corelibs/U2Core/src/util/MultipleSequenceAlignmentImporter.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ src/KalignConstants.h \ src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/kalign_tests/KalignTests.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/GTest.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/KalignTests.o src/kalign_tests/KalignTests.cpp _tmp/obj/debug/kalign2_context.o: src/kalign2/kalign2_context.c src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_context.o src/kalign2/kalign2_context.c _tmp/obj/debug/kalign2_distance_calculation.o: src/kalign2/kalign2_distance_calculation.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_distance_calculation.o src/kalign2/kalign2_distance_calculation.c _tmp/obj/debug/kalign2_dp.o: src/kalign2/kalign2_dp.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_dp.o src/kalign2/kalign2_dp.c _tmp/obj/debug/kalign2_input.o: src/kalign2/kalign2_input.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2_input.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_input.o src/kalign2/kalign2_input.c _tmp/obj/debug/kalign2_main.o: src/kalign2/kalign2_main.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_main.o src/kalign2/kalign2_main.c _tmp/obj/debug/kalign2_mem.o: src/kalign2/kalign2_mem.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_mem.o src/kalign2/kalign2_mem.c _tmp/obj/debug/kalign2_inferface.o: src/kalign2/kalign2_inferface.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2_input.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_inferface.o src/kalign2/kalign2_inferface.c _tmp/obj/debug/kalign2_misc.o: src/kalign2/kalign2_misc.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_misc.o src/kalign2/kalign2_misc.c _tmp/obj/debug/kalign2_tree.o: src/kalign2/kalign2_tree.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_tree.o src/kalign2/kalign2_tree.c _tmp/obj/debug/kalign2_profile.o: src/kalign2/kalign2_profile.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_profile.o src/kalign2/kalign2_profile.c _tmp/obj/debug/kalign2_alignment_types.o: src/kalign2/kalign2_alignment_types.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_alignment_types.o src/kalign2/kalign2_alignment_types.c _tmp/obj/debug/kalign2_feature.o: src/kalign2/kalign2_feature.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2_feature.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_feature.o src/kalign2/kalign2_feature.c _tmp/obj/debug/kalign2_hirschberg.o: src/kalign2/kalign2_hirschberg.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2_hirschberg.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_hirschberg.o src/kalign2/kalign2_hirschberg.c _tmp/obj/debug/kalign2_advanced_gaps.o: src/kalign2/kalign2_advanced_gaps.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2_advanced_gaps.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_advanced_gaps.o src/kalign2/kalign2_advanced_gaps.c _tmp/obj/debug/kalign2_hirschberg_dna.o: src/kalign2/kalign2_hirschberg_dna.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2_hirschberg_dna.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_hirschberg_dna.o src/kalign2/kalign2_hirschberg_dna.c _tmp/obj/debug/kalign2_output.o: src/kalign2/kalign2_output.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2_output.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_output.o src/kalign2/kalign2_output.c _tmp/obj/debug/kalign2_string_matching.o: src/kalign2/kalign2_string_matching.c $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_string_matching.o src/kalign2/kalign2_string_matching.c _tmp/obj/debug/kalign2_profile_alignment.o: src/kalign2/kalign2_profile_alignment.c src/kalign2/kalign2.h \ src/kalign2/kalign2_context.h \ src/kalign2/kalign2_profile_alignment.h \ src/kalign2/kalign2_hirschberg.h $(CC) -c $(CFLAGS) $(INCPATH) -o _tmp/obj/debug/kalign2_profile_alignment.o src/kalign2/kalign2_profile_alignment.c _tmp/obj/debug/PairwiseAlignmentHirschbergTaskFactory.o: src/PairwiseAlignmentHirschbergTaskFactory.cpp src/PairwiseAlignmentHirschbergTaskFactory.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ src/PairwiseAlignmentHirschbergTask.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/UserApplicationsSettings.h \ ../../corelibs/U2Core/src/globals/UserApplicationsSettings.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/PairwiseAlignmentHirschbergTaskFactory.o src/PairwiseAlignmentHirschbergTaskFactory.cpp _tmp/obj/debug/PairwiseAlignmentHirschbergGUIExtensionFactory.o: src/PairwiseAlignmentHirschbergGUIExtensionFactory.cpp src/PairwiseAlignmentHirschbergGUIExtensionFactory.h \ _tmp/ui/ui_PairwiseAlignmentHirschbergOptionsPanelMainWidget.h \ ../../include/U2View/AlignmentAlgorithmGUIExtension.h \ ../../corelibs/U2View/src/util_msa_align/AlignmentAlgorithmGUIExtension.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ src/PairwiseAlignmentHirschbergTask.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/PairwiseAlignmentHirschbergGUIExtensionFactory.o src/PairwiseAlignmentHirschbergGUIExtensionFactory.cpp _tmp/obj/debug/PairwiseAlignmentHirschbergTask.o: src/PairwiseAlignmentHirschbergTask.cpp src/PairwiseAlignmentHirschbergTask.h \ ../../include/U2Algorithm/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/pairwise_alignment/PairwiseAlignmentTask.h \ ../../corelibs/U2Algorithm/src/msa_alignment/AbstractAlignmentTask.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Algorithm/AlignmentAlgorithmsRegistry.h \ ../../corelibs/U2Algorithm/src/registry/AlignmentAlgorithmsRegistry.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ src/KalignTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/TLSTask.h \ ../../corelibs/U2Core/src/tasks/TLSTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ ../../include/U2Core/U2SequenceDbi.h \ ../../corelibs/U2Core/src/dbi/U2SequenceDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/U2MsaDbi.h \ ../../corelibs/U2Core/src/dbi/U2MsaDbi.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/U2AlphabetUtils.h \ ../../corelibs/U2Core/src/util/U2AlphabetUtils.h \ ../../include/U2Core/TextUtils.h \ ../../corelibs/U2Core/src/util/TextUtils.h \ ../../include/U2Core/Timer.h \ ../../corelibs/U2Core/src/globals/Timer.h \ ../../include/U2Core/Counter.h \ ../../corelibs/U2Core/src/globals/Counter.h \ ../../include/U2Core/MultipleSequenceAlignmentImporter.h \ ../../corelibs/U2Core/src/util/MultipleSequenceAlignmentImporter.h \ ../../include/U2Core/IOAdapterUtils.h \ ../../corelibs/U2Core/src/util/IOAdapterUtils.h \ ../../include/U2Core/IOAdapter.h \ ../../corelibs/U2Core/src/io/IOAdapter.h \ ../../include/U2Core/BaseDocumentFormats.h \ ../../corelibs/U2Core/src/globals/BaseDocumentFormats.h \ ../../include/U2Core/ProjectModel.h \ ../../corelibs/U2Core/src/models/ProjectModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Lang/WorkflowSettings.h \ ../../corelibs/U2Lang/src/support/WorkflowSettings.h \ ../../include/U2Lang/SimpleWorkflowTask.h \ ../../corelibs/U2Lang/src/support/SimpleWorkflowTask.h \ ../../include/U2Core/DocumentModel.h \ ../../include/U2Core/DocumentProviderTask.h \ ../../corelibs/U2Core/src/tasks/DocumentProviderTask.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/WorkflowIOTasks.h \ ../../corelibs/U2Lang/src/support/WorkflowIOTasks.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/PairwiseAlignmentHirschbergTask.o src/PairwiseAlignmentHirschbergTask.cpp _tmp/obj/debug/qrc_kalign.o: _tmp/rcc/qrc_kalign.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/qrc_kalign.o _tmp/rcc/qrc_kalign.cpp _tmp/obj/debug/moc_KalignAdapter.o: _tmp/moc/debug/moc_KalignAdapter.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_KalignAdapter.o _tmp/moc/debug/moc_KalignAdapter.cpp _tmp/obj/debug/moc_KalignDialogController.o: _tmp/moc/debug/moc_KalignDialogController.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_KalignDialogController.o _tmp/moc/debug/moc_KalignDialogController.cpp _tmp/obj/debug/moc_KalignPlugin.o: _tmp/moc/debug/moc_KalignPlugin.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_KalignPlugin.o _tmp/moc/debug/moc_KalignPlugin.cpp _tmp/obj/debug/moc_KalignTask.o: _tmp/moc/debug/moc_KalignTask.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_KalignTask.o _tmp/moc/debug/moc_KalignTask.cpp _tmp/obj/debug/moc_KalignWorker.o: _tmp/moc/debug/moc_KalignWorker.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_KalignWorker.o _tmp/moc/debug/moc_KalignWorker.cpp _tmp/obj/debug/moc_KalignTests.o: _tmp/moc/debug/moc_KalignTests.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_KalignTests.o _tmp/moc/debug/moc_KalignTests.cpp _tmp/obj/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.o: _tmp/moc/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.o _tmp/moc/debug/moc_PairwiseAlignmentHirschbergGUIExtensionFactory.cpp ####### Install install_target: first FORCE @test -d $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins || mkdir -p $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins -$(INSTALL_PROGRAM) ../../_debug/plugins/$(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET) -$(SYMLINK) $(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET0) -$(SYMLINK) $(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET1) -$(SYMLINK) $(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET2) uninstall_target: FORCE -$(DEL_FILE) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET) -$(DEL_FILE) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET0) -$(DEL_FILE) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET1) -$(DEL_FILE) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET2) -$(DEL_DIR) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/ install: install_target FORCE uninstall: uninstall_target FORCE FORCE: