############################################################################# # Makefile for building: libphylipd.so.1.0.0 # Generated by qmake (3.0) (Qt 5.5.1) # Project: phylip.pro # Template: lib ############################################################################# MAKEFILE = Makefile.Debug ####### Compiler, tools and options CC = gcc CXX = g++ DEFINES = -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.29.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=29 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/home/birch/BIRCH/local/pkg/ugene-1.29.0/share/ugene/data\" -DQT_DLL -D_DEBUG -DPLUGIN_ID=\"phylipd\" -DQT_WEBKIT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_SCRIPT_LIB -DQT_NETWORK_LIB -DQT_XML_LIB -DQT_CORE_LIB CFLAGS = -m64 -pipe -g -D_REENTRANT -w -fPIC $(DEFINES) CXXFLAGS = -m64 -pipe -g -D_REENTRANT -w -fPIC $(DEFINES) INCPATH = -I. -Isrc -I_tmp -I../../include -I../../corelibs/U2View/_tmp -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWebKit -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtScript -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -I_tmp/moc/debug -I_tmp/ui -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 QMAKE = /usr/lib/x86_64-linux-gnu/qt5/bin/qmake DEL_FILE = rm -f CHK_DIR_EXISTS= test -d MKDIR = mkdir -p COPY = cp -f COPY_FILE = cp -f COPY_DIR = cp -f -R INSTALL_FILE = install -m 644 -p INSTALL_PROGRAM = install -m 755 -p INSTALL_DIR = cp -f -R DEL_FILE = rm -f SYMLINK = ln -f -s DEL_DIR = rmdir MOVE = mv -f TAR = tar -cf COMPRESS = gzip -9f DISTNAME = phylipd1.0.0 DISTDIR = /home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/_tmp/obj/debug/phylipd1.0.0 LINK = g++ LFLAGS = -m64 -Wl,-rpath-link,/usr/lib/x86_64-linux-gnu -shared -Wl,-soname,libphylipd.so.1 LIBS = $(SUBLIBS) -L/usr/X11R6/lib64 -L../../_debug -lU2Cored -lU2Algorithmd -lU2Formatsd -lU2Guid -lU2Viewd -lU2Testd -lU2Langd -lU2Designerd -lQt5WebKit -lQt5Svg -lQt5Widgets -lQt5Gui -lQt5Script -lQt5Network -lQt5Xml -lQt5Core -lpthread -lGL AR = ar cqs RANLIB = SED = sed STRIP = strip ####### Output directory OBJECTS_DIR = _tmp/obj/debug/ ####### Files SOURCES = src/SeqBootAdapter.cpp \ src/cons.cpp \ src/seqboot.cpp \ src/DistanceMatrix.cpp \ src/NeighborJoinAdapter.cpp \ src/NeighborJoinWidget.cpp \ src/PhylipCmdlineTask.cpp \ src/PhylipPlugin.cpp \ src/PhylipPluginTests.cpp \ src/PhylipTask.cpp \ src/dist.cpp \ src/dnadist.cpp \ src/neighbor.cpp \ src/phylip.cpp \ src/protdist.cpp \ src/seq.cpp _tmp/moc/debug/moc_NeighborJoinWidget.cpp \ _tmp/moc/debug/moc_PhylipCmdlineTask.cpp \ _tmp/moc/debug/moc_PhylipPlugin.cpp \ _tmp/moc/debug/moc_PhylipPluginTests.cpp \ _tmp/moc/debug/moc_PhylipTask.cpp OBJECTS = _tmp/obj/debug/SeqBootAdapter.o \ _tmp/obj/debug/cons.o \ _tmp/obj/debug/seqboot.o \ _tmp/obj/debug/DistanceMatrix.o \ _tmp/obj/debug/NeighborJoinAdapter.o \ _tmp/obj/debug/NeighborJoinWidget.o \ _tmp/obj/debug/PhylipCmdlineTask.o \ _tmp/obj/debug/PhylipPlugin.o \ _tmp/obj/debug/PhylipPluginTests.o \ _tmp/obj/debug/PhylipTask.o \ _tmp/obj/debug/dist.o \ _tmp/obj/debug/dnadist.o \ _tmp/obj/debug/neighbor.o \ _tmp/obj/debug/phylip.o \ _tmp/obj/debug/protdist.o \ _tmp/obj/debug/seq.o \ _tmp/obj/debug/moc_NeighborJoinWidget.o \ _tmp/obj/debug/moc_PhylipCmdlineTask.o \ _tmp/obj/debug/moc_PhylipPlugin.o \ _tmp/obj/debug/moc_PhylipPluginTests.o \ _tmp/obj/debug/moc_PhylipTask.o DIST = /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/spec_pre.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/linux.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/sanitize.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/gcc-base.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/gcc-base-unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/g++-base.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/g++-unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/qconfig.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_bootstrap_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_concurrent.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_concurrent_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_core.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_core_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_dbus.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_dbus_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_eglfs_device_lib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_gui.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_gui_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_network.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_network_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_opengl.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_opengl_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_openglextensions.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_openglextensions_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_platformsupport_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_printsupport.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_printsupport_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_qml.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_qmltest.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_quick.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_quickwidgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_script.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_scripttools.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_sql.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_sql_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_svg.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_testlib.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_testlib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_webkit.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_webkitwidgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_widgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_widgets_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xcb_qpa_lib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xml.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xml_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt_functions.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt_config.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64/qmake.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/spec_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exclusive_builds.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/default_pre.prf \ ../../ugene_version.pri \ ../../ugene_globals.pri \ ../../ugene_lib_common.pri \ ../../ugene_plugin_descriptor.pri \ ../../ugene_plugin_common.pri \ phylip.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/resolve_config.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exclusive_builds_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/default_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/build_pass.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/unix/thread.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/resources.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/moc.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/unix/opengl.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/uic.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/warn_off.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/testcase_targets.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exceptions.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/yacc.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/lex.prf \ phylip.pro src/SeqBootAdapter.h \ src/cons.h \ src/seqboot.h \ src/DistanceMatrix.h \ src/NeighborJoinAdapter.h \ src/NeighborJoinWidget.h \ src/PhylipCmdlineTask.h \ src/PhylipPlugin.h \ src/PhylipPluginTests.h \ src/PhylipTask.h \ src/dist.h \ src/dnadist.h \ src/neighbor.h \ src/phylip.h \ src/protdist.h \ src/seq.h src/SeqBootAdapter.cpp \ src/cons.cpp \ src/seqboot.cpp \ src/DistanceMatrix.cpp \ src/NeighborJoinAdapter.cpp \ src/NeighborJoinWidget.cpp \ src/PhylipCmdlineTask.cpp \ src/PhylipPlugin.cpp \ src/PhylipPluginTests.cpp \ src/PhylipTask.cpp \ src/dist.cpp \ src/dnadist.cpp \ src/neighbor.cpp \ src/phylip.cpp \ src/protdist.cpp \ src/seq.cpp QMAKE_TARGET = phylipd DESTDIR = ../../_debug/plugins/#avoid trailing-slash linebreak TARGET = libphylipd.so.1.0.0 TARGETA = ../../_debug/plugins/libphylipd.a TARGET0 = libphylipd.so TARGETD = libphylipd.so.1.0.0 TARGET1 = libphylipd.so.1 TARGET2 = libphylipd.so.1.0 first: all ####### Implicit rules .SUFFIXES: .o .c .cpp .cc .cxx .C .cpp.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .cc.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .cxx.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .C.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .c.o: $(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<" ####### Build rules ../../_debug/plugins/$(TARGET): _tmp/ui/ui_NeighborJoinWidget.h $(OBJECTS) $(SUBLIBS) $(OBJCOMP) @test -d ../../_debug/plugins/ || mkdir -p ../../_debug/plugins/ -$(DEL_FILE) $(TARGET) $(TARGET0) $(TARGET1) $(TARGET2) $(LINK) $(LFLAGS) -o $(TARGET) $(OBJECTS) $(LIBS) $(OBJCOMP) -ln -s $(TARGET) $(TARGET0) -ln -s $(TARGET) $(TARGET1) -ln -s $(TARGET) $(TARGET2) -$(DEL_FILE) ../../_debug/plugins/$(TARGET) -$(MOVE) $(TARGET) ../../_debug/plugins/ -$(DEL_FILE) ../../_debug/plugins/$(TARGET0) -$(DEL_FILE) ../../_debug/plugins/$(TARGET1) -$(DEL_FILE) ../../_debug/plugins/$(TARGET2) -$(MOVE) $(TARGET0) ../../_debug/plugins/ -$(MOVE) $(TARGET1) ../../_debug/plugins/ -$(MOVE) $(TARGET2) ../../_debug/plugins/ staticlib: $(TARGETA) $(TARGETA): _tmp/ui/ui_NeighborJoinWidget.h $(OBJECTS) $(OBJCOMP) -$(DEL_FILE) $(TARGETA) $(AR) $(TARGETA) $(OBJECTS) qmake: FORCE @$(QMAKE) INSTALL_PREFIX=/home/birch/BIRCH/local/pkg/ugene-1.29.0 -o Makefile.Debug phylip.pro qmake_all: FORCE all: Makefile.Debug ../../_debug/plugins/$(TARGET) dist: distdir FORCE (cd `dirname $(DISTDIR)` && $(TAR) $(DISTNAME).tar $(DISTNAME) && $(COMPRESS) $(DISTNAME).tar) && $(MOVE) `dirname $(DISTDIR)`/$(DISTNAME).tar.gz . && $(DEL_FILE) -r $(DISTDIR) distdir: FORCE @test -d $(DISTDIR) || mkdir -p $(DISTDIR) $(COPY_FILE) --parents $(DIST) $(DISTDIR)/ $(COPY_FILE) --parents src/SeqBootAdapter.h src/cons.h src/seqboot.h src/DistanceMatrix.h src/NeighborJoinAdapter.h src/NeighborJoinWidget.h src/PhylipCmdlineTask.h src/PhylipPlugin.h src/PhylipPluginTests.h src/PhylipTask.h src/dist.h src/dnadist.h src/neighbor.h src/phylip.h src/protdist.h src/seq.h $(DISTDIR)/ $(COPY_FILE) --parents src/SeqBootAdapter.cpp src/cons.cpp src/seqboot.cpp src/DistanceMatrix.cpp src/NeighborJoinAdapter.cpp src/NeighborJoinWidget.cpp src/PhylipCmdlineTask.cpp src/PhylipPlugin.cpp src/PhylipPluginTests.cpp src/PhylipTask.cpp src/dist.cpp src/dnadist.cpp src/neighbor.cpp src/phylip.cpp src/protdist.cpp src/seq.cpp $(DISTDIR)/ $(COPY_FILE) --parents src/NeighborJoinWidget.ui $(DISTDIR)/ $(COPY_FILE) --parents transl/english.ts transl/russian.ts $(DISTDIR)/ clean: compiler_clean -$(DEL_FILE) $(OBJECTS) -$(DEL_FILE) *~ core *.core distclean: clean -$(DEL_FILE) ../../_debug/plugins/$(TARGET) -$(DEL_FILE) ../../_debug/plugins/$(TARGET0) ../../_debug/plugins/$(TARGET1) ../../_debug/plugins/$(TARGET2) $(TARGETA) -$(DEL_FILE) Makefile.Debug ####### Sub-libraries mocclean: compiler_moc_header_clean compiler_moc_source_clean mocables: compiler_moc_header_make_all compiler_moc_source_make_all check: first compiler_rcc_make_all: compiler_rcc_clean: compiler_moc_header_make_all: _tmp/moc/debug/moc_NeighborJoinWidget.cpp _tmp/moc/debug/moc_PhylipCmdlineTask.cpp _tmp/moc/debug/moc_PhylipPlugin.cpp _tmp/moc/debug/moc_PhylipPluginTests.cpp _tmp/moc/debug/moc_PhylipTask.cpp compiler_moc_header_clean: -$(DEL_FILE) _tmp/moc/debug/moc_NeighborJoinWidget.cpp _tmp/moc/debug/moc_PhylipCmdlineTask.cpp _tmp/moc/debug/moc_PhylipPlugin.cpp _tmp/moc/debug/moc_PhylipPluginTests.cpp _tmp/moc/debug/moc_PhylipTask.cpp _tmp/moc/debug/moc_NeighborJoinWidget.cpp: ../../include/U2View/CreatePhyTreeWidget.h \ ../../corelibs/U2View/src/phyltree/CreatePhyTreeWidget.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ _tmp/ui/ui_NeighborJoinWidget.h \ ../../include/U2View/PhyTreeDisplayOptionsWidget.h \ ../../corelibs/U2View/src/phyltree/PhyTreeDisplayOptionsWidget.h \ src/NeighborJoinWidget.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/NeighborJoinWidget.h -o _tmp/moc/debug/moc_NeighborJoinWidget.cpp _tmp/moc/debug/moc_PhylipCmdlineTask.cpp: ../../include/U2Algorithm/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ src/PhylipCmdlineTask.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/PhylipCmdlineTask.h -o _tmp/moc/debug/moc_PhylipCmdlineTask.cpp _tmp/moc/debug/moc_PhylipPlugin.cpp: ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h \ src/PhylipPlugin.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/PhylipPlugin.h -o _tmp/moc/debug/moc_PhylipPlugin.cpp _tmp/moc/debug/moc_PhylipPluginTests.cpp: ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Algorithm/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ src/PhylipPluginTests.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/PhylipPluginTests.h -o _tmp/moc/debug/moc_PhylipPluginTests.cpp _tmp/moc/debug/moc_PhylipTask.cpp: ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/CmdlineTaskRunner.h \ ../../corelibs/U2Core/src/tasks/CmdlineTaskRunner.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ src/PhylipTask.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/phylip/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/corelibs/U2View/_tmp -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/PhylipTask.h -o _tmp/moc/debug/moc_PhylipTask.cpp compiler_moc_source_make_all: compiler_moc_source_clean: compiler_uic_make_all: _tmp/ui/ui_NeighborJoinWidget.h compiler_uic_clean: -$(DEL_FILE) _tmp/ui/ui_NeighborJoinWidget.h _tmp/ui/ui_NeighborJoinWidget.h: src/NeighborJoinWidget.ui \ ../../include/U2View/PhyTreeDisplayOptionsWidget.h \ ../../corelibs/U2View/src/phyltree/PhyTreeDisplayOptionsWidget.h \ ../../corelibs/U2View/src/phyltree/CreatePhyTreeWidget.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h /usr/lib/x86_64-linux-gnu/qt5/bin/uic src/NeighborJoinWidget.ui -o _tmp/ui/ui_NeighborJoinWidget.h compiler_yacc_decl_make_all: compiler_yacc_decl_clean: compiler_yacc_impl_make_all: compiler_yacc_impl_clean: compiler_lex_make_all: compiler_lex_clean: compiler_clean: compiler_moc_header_clean compiler_uic_clean ####### Compile _tmp/obj/debug/SeqBootAdapter.o: src/SeqBootAdapter.cpp src/SeqBootAdapter.h \ src/seqboot.h \ src/phylip.h \ src/seq.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ src/cons.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/UserApplicationsSettings.h \ ../../corelibs/U2Core/src/globals/UserApplicationsSettings.h \ ../../include/U2Core/GUrlUtils.h \ ../../corelibs/U2Core/src/util/GUrlUtils.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/SeqBootAdapter.o src/SeqBootAdapter.cpp _tmp/obj/debug/cons.o: src/cons.cpp src/phylip.h \ src/cons.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/cons.o src/cons.cpp _tmp/obj/debug/seqboot.o: src/seqboot.cpp ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ src/seqboot.h \ src/phylip.h \ src/seq.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/seqboot.o src/seqboot.cpp _tmp/obj/debug/DistanceMatrix.o: src/DistanceMatrix.cpp src/DistanceMatrix.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ src/dnadist.h \ src/seq.h \ src/phylip.h \ src/protdist.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/DistanceMatrix.o src/DistanceMatrix.cpp _tmp/obj/debug/NeighborJoinAdapter.o: src/NeighborJoinAdapter.cpp ../../include/U2Core/Counter.h \ ../../corelibs/U2Core/src/globals/Counter.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ src/DistanceMatrix.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ src/NeighborJoinAdapter.h \ ../../include/U2Algorithm/PhyTreeGenerator.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h \ ../../include/U2Algorithm/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h \ src/NeighborJoinWidget.h \ ../../include/U2View/CreatePhyTreeWidget.h \ ../../corelibs/U2View/src/phyltree/CreatePhyTreeWidget.h \ _tmp/ui/ui_NeighborJoinWidget.h \ ../../include/U2View/PhyTreeDisplayOptionsWidget.h \ ../../corelibs/U2View/src/phyltree/PhyTreeDisplayOptionsWidget.h \ src/PhylipCmdlineTask.h \ src/SeqBootAdapter.h \ src/seqboot.h \ src/phylip.h \ src/seq.h \ src/cons.h \ src/dnadist.h \ src/neighbor.h \ src/protdist.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/NeighborJoinAdapter.o src/NeighborJoinAdapter.cpp _tmp/obj/debug/NeighborJoinWidget.o: src/NeighborJoinWidget.cpp ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/global.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/Settings.h \ ../../corelibs/U2Core/src/globals/Settings.h \ src/NeighborJoinWidget.h \ ../../include/U2View/CreatePhyTreeWidget.h \ ../../corelibs/U2View/src/phyltree/CreatePhyTreeWidget.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ _tmp/ui/ui_NeighborJoinWidget.h \ ../../include/U2View/PhyTreeDisplayOptionsWidget.h \ ../../corelibs/U2View/src/phyltree/PhyTreeDisplayOptionsWidget.h \ src/dnadist.h \ src/seq.h \ src/phylip.h \ src/protdist.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/NeighborJoinWidget.o src/NeighborJoinWidget.cpp _tmp/obj/debug/PhylipCmdlineTask.o: src/PhylipCmdlineTask.cpp ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/global.h \ ../../include/U2Core/CmdlineInOutTaskRunner.h \ ../../corelibs/U2Core/src/tasks/CmdlineInOutTaskRunner.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/CmdlineTaskRunner.h \ ../../corelibs/U2Core/src/tasks/CmdlineTaskRunner.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DeleteObjectsTask.h \ ../../corelibs/U2Core/src/tasks/DeleteObjectsTask.h \ ../../include/U2Core/Folder.h \ ../../corelibs/U2Core/src/models/Folder.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/GUrlUtils.h \ ../../corelibs/U2Core/src/util/GUrlUtils.h \ ../../include/U2Core/MultipleSequenceAlignmentImporter.h \ ../../corelibs/U2Core/src/util/MultipleSequenceAlignmentImporter.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../include/U2Core/PhyTreeObject.h \ ../../corelibs/U2Core/src/gobjects/PhyTreeObject.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Core/U2RawData.h \ ../../corelibs/U2Core/src/datatype/U2RawData.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/UserApplicationsSettings.h \ ../../corelibs/U2Core/src/globals/UserApplicationsSettings.h \ src/PhylipCmdlineTask.h \ ../../include/U2Algorithm/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/PhylipCmdlineTask.o src/PhylipCmdlineTask.cpp _tmp/obj/debug/PhylipPlugin.o: src/PhylipPlugin.cpp ../../include/U2Algorithm/PhyTreeGeneratorRegistry.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorRegistry.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/CMDLineRegistry.h \ ../../corelibs/U2Core/src/cmdline/CMDLineRegistry.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/CmdlineInOutTaskRunner.h \ ../../corelibs/U2Core/src/tasks/CmdlineInOutTaskRunner.h \ ../../include/U2Core/CmdlineTaskRunner.h \ ../../corelibs/U2Core/src/tasks/CmdlineTaskRunner.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Core/TaskStarter.h \ ../../corelibs/U2Core/src/tasks/TaskStarter.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ ../../include/U2Test/XMLTestFormat.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2Test/GTestFrameworkComponents.h \ ../../corelibs/U2Test/src/GTestFrameworkComponents.h \ src/PhylipPluginTests.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Algorithm/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ src/PhylipCmdlineTask.h \ src/PhylipTask.h \ src/NeighborJoinAdapter.h \ ../../include/U2Algorithm/PhyTreeGenerator.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ src/PhylipPlugin.h \ ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/PhylipPlugin.o src/PhylipPlugin.cpp _tmp/obj/debug/PhylipPluginTests.o: src/PhylipPluginTests.cpp src/PhylipPlugin.h \ ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h \ src/PhylipPluginTests.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Algorithm/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/BaseDocumentFormats.h \ ../../corelibs/U2Core/src/globals/BaseDocumentFormats.h \ ../../include/U2Core/IOAdapter.h \ ../../corelibs/U2Core/src/io/IOAdapter.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/PhyTreeObject.h \ ../../corelibs/U2Core/src/gobjects/PhyTreeObject.h \ ../../include/U2Core/U2RawData.h \ ../../corelibs/U2Core/src/datatype/U2RawData.h \ src/DistanceMatrix.h \ ../../include/U2Algorithm/SubstMatrixRegistry.h \ ../../corelibs/U2Algorithm/src/registry/SubstMatrixRegistry.h \ ../../include/U2Core/SMatrix.h \ ../../corelibs/U2Core/src/datatype/SMatrix.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Algorithm/PhyTreeGeneratorRegistry.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorRegistry.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/PhylipPluginTests.o src/PhylipPluginTests.cpp _tmp/obj/debug/PhylipTask.o: src/PhylipTask.cpp ../../include/U2Core/CmdlineInOutTaskRunner.h \ ../../corelibs/U2Core/src/tasks/CmdlineInOutTaskRunner.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/CmdlineTaskRunner.h \ ../../corelibs/U2Core/src/tasks/CmdlineTaskRunner.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/PhyTreeObject.h \ ../../corelibs/U2Core/src/gobjects/PhyTreeObject.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../include/U2Core/U2RawData.h \ ../../corelibs/U2Core/src/datatype/U2RawData.h \ src/NeighborJoinAdapter.h \ ../../include/U2Algorithm/PhyTreeGenerator.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGenerator.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Algorithm/PhyTreeGeneratorTask.h \ ../../corelibs/U2Algorithm/src/phyltree/PhyTreeGeneratorTask.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ src/PhylipTask.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/PhylipTask.o src/PhylipTask.cpp _tmp/obj/debug/dist.o: src/dist.cpp src/phylip.h \ src/dist.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/dist.o src/dist.cpp _tmp/obj/debug/dnadist.o: src/dnadist.cpp src/dnadist.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ src/seq.h \ src/phylip.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/dnadist.o src/dnadist.cpp _tmp/obj/debug/neighbor.o: src/neighbor.cpp src/dist.h \ src/phylip.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/neighbor.o src/neighbor.cpp _tmp/obj/debug/phylip.o: src/phylip.cpp src/phylip.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/phylip.o src/phylip.cpp _tmp/obj/debug/protdist.o: src/protdist.cpp src/phylip.h \ src/seq.h \ src/protdist.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ src/dnadist.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/protdist.o src/protdist.cpp _tmp/obj/debug/seq.o: src/seq.cpp src/phylip.h \ src/seq.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/seq.o src/seq.cpp _tmp/obj/debug/moc_NeighborJoinWidget.o: _tmp/moc/debug/moc_NeighborJoinWidget.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_NeighborJoinWidget.o _tmp/moc/debug/moc_NeighborJoinWidget.cpp _tmp/obj/debug/moc_PhylipCmdlineTask.o: _tmp/moc/debug/moc_PhylipCmdlineTask.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_PhylipCmdlineTask.o _tmp/moc/debug/moc_PhylipCmdlineTask.cpp _tmp/obj/debug/moc_PhylipPlugin.o: _tmp/moc/debug/moc_PhylipPlugin.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_PhylipPlugin.o _tmp/moc/debug/moc_PhylipPlugin.cpp _tmp/obj/debug/moc_PhylipPluginTests.o: _tmp/moc/debug/moc_PhylipPluginTests.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_PhylipPluginTests.o _tmp/moc/debug/moc_PhylipPluginTests.cpp _tmp/obj/debug/moc_PhylipTask.o: _tmp/moc/debug/moc_PhylipTask.cpp $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/debug/moc_PhylipTask.o _tmp/moc/debug/moc_PhylipTask.cpp ####### Install install_target: first FORCE @test -d $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins || mkdir -p $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins -$(INSTALL_PROGRAM) ../../_debug/plugins/$(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET) -$(SYMLINK) $(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET0) -$(SYMLINK) $(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET1) -$(SYMLINK) $(TARGET) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET2) uninstall_target: FORCE -$(DEL_FILE) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET) -$(DEL_FILE) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET0) -$(DEL_FILE) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET1) -$(DEL_FILE) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/$(TARGET2) -$(DEL_DIR) $(INSTALL_ROOT)/home/birch/BIRCH/local/pkg/ugene-1.29.0/lib/ugene/plugins/ install: install_target FORCE uninstall: uninstall_target FORCE FORCE: