include (umuscle.pri) # Input HEADERS += src/MuscleAdapter.h \ src/MuscleAlignDialogController.h \ src/MuscleConstants.h \ src/MuscleParallel.h \ src/MusclePlugin.h \ src/MuscleTask.h \ src/MuscleUtils.h \ src/MuscleWorker.h \ src/MuscleWorkPool.h \ src/ProfileToProfileWorker.h \ src/TaskLocalStorage.h \ src/muscle/alpha.h \ src/muscle/clust.h \ src/muscle/cluster.h \ src/muscle/clustset.h \ src/muscle/clustsetdf.h \ src/muscle/clustsetmsa.h \ src/muscle/diaglist.h \ src/muscle/distcalc.h \ src/muscle/distfunc.h \ src/muscle/dpregionlist.h \ src/muscle/dpreglist.h \ src/muscle/edgelist.h \ src/muscle/enumopts.h \ src/muscle/enums.h \ src/muscle/estring.h \ src/muscle/gapscoredimer.h \ src/muscle/gonnet.h \ src/muscle/intmath.h \ src/muscle/msa.h \ src/muscle/msadist.h \ src/muscle/msadistkimura.h \ src/muscle/msadistmafft.h \ src/muscle/muscle.h \ src/muscle/muscle_context.h \ src/muscle/objscore.h \ src/muscle/params.h \ src/muscle/profile.h \ src/muscle/pwpath.h \ src/muscle/scorehistory.h \ src/muscle/seq.h \ src/muscle/seqvect.h \ src/muscle/textfile.h \ src/muscle/timing.h \ src/muscle/tree.h \ src/muscle/types.h \ src/muscle/unixio.h \ src/umuscle_tests/umuscleTests.h FORMS += src/MuscleAlignDialog.ui SOURCES += src/MuscleAdapter.cpp \ src/MuscleAlignDialogController.cpp \ src/MuscleParallel.cpp \ src/MusclePlugin.cpp \ src/MuscleTask.cpp \ src/MuscleUtils.cpp \ src/MuscleWorker.cpp \ src/MuscleWorkPool.cpp \ src/ProfileToProfileWorker.cpp \ src/refinehorizP.cpp \ src/refinevertP.cpp \ src/TaskLocalStorage.cpp \ src/muscle/aligngivenpath.cpp \ src/muscle/aligngivenpathsw.cpp \ src/muscle/aligntwomsas.cpp \ src/muscle/aligntwoprofs.cpp \ src/muscle/aln.cpp \ src/muscle/alpha.cpp \ src/muscle/anchors.cpp \ src/muscle/bittraceback.cpp \ src/muscle/blosum62.cpp \ src/muscle/blosumla.cpp \ src/muscle/clust.cpp \ src/muscle/cluster.cpp \ src/muscle/clwwt.cpp \ src/muscle/color.cpp \ src/muscle/cons.cpp \ src/muscle/diaglist.cpp \ src/muscle/diffobjscore.cpp \ src/muscle/diffpaths.cpp \ src/muscle/difftrees.cpp \ src/muscle/difftreese.cpp \ src/muscle/distcalc.cpp \ src/muscle/distfunc.cpp \ src/muscle/distpwkimura.cpp \ src/muscle/domuscle.cpp \ src/muscle/dosp.cpp \ src/muscle/dpreglist.cpp \ src/muscle/drawtree.cpp \ src/muscle/edgelist.cpp \ src/muscle/enumopts.cpp \ src/muscle/enumtostr.cpp \ src/muscle/estring.cpp \ src/muscle/fasta.cpp \ src/muscle/fasta2.cpp \ src/muscle/fastclust.cpp \ src/muscle/fastdist.cpp \ src/muscle/fastdistjones.cpp \ src/muscle/fastdistkbit.cpp \ src/muscle/fastdistkmer.cpp \ src/muscle/fastdistmafft.cpp \ src/muscle/fastdistnuc.cpp \ src/muscle/fastscorepath2.cpp \ src/muscle/finddiags.cpp \ src/muscle/finddiagsn.cpp \ src/muscle/glbalign.cpp \ src/muscle/glbalign352.cpp \ src/muscle/glbaligndiag.cpp \ src/muscle/glbalignle.cpp \ src/muscle/glbalignsimple.cpp \ src/muscle/glbalignsp.cpp \ src/muscle/glbalignspn.cpp \ src/muscle/glbalignss.cpp \ src/muscle/glbalndimer.cpp \ src/muscle/globals.cpp \ src/muscle/globalslinux.cpp \ src/muscle/globalsosx.cpp \ src/muscle/globalsother.cpp \ src/muscle/globalswin32.cpp \ src/muscle/gonnet.cpp \ src/muscle/henikoffweight.cpp \ src/muscle/henikoffweightpb.cpp \ src/muscle/html.cpp \ src/muscle/hydro.cpp \ src/muscle/intmath.cpp \ src/muscle/local.cpp \ src/muscle/main.cpp \ src/muscle/makerootmsa.cpp \ src/muscle/makerootmsab.cpp \ src/muscle/maketree.cpp \ src/muscle/mhack.cpp \ src/muscle/mpam200.cpp \ src/muscle/msa.cpp \ src/muscle/msa2.cpp \ src/muscle/msadistkimura.cpp \ src/muscle/msf.cpp \ src/muscle/muscle.cpp \ src/muscle/muscle_context.cpp \ src/muscle/muscleout.cpp \ src/muscle/nucmx.cpp \ src/muscle/nwdasimple.cpp \ src/muscle/nwdasimple2.cpp \ src/muscle/nwdasmall.cpp \ src/muscle/nwrec.cpp \ src/muscle/nwsmall.cpp \ src/muscle/objscore.cpp \ src/muscle/objscore2.cpp \ src/muscle/objscoreda.cpp \ src/muscle/onexception.cpp \ src/muscle/options.cpp \ src/muscle/outweights.cpp \ src/muscle/pam200mafft.cpp \ src/muscle/params.cpp \ src/muscle/phy.cpp \ src/muscle/phy2.cpp \ src/muscle/phy3.cpp \ src/muscle/phy4.cpp \ src/muscle/phyfromclust.cpp \ src/muscle/phyfromfile.cpp \ src/muscle/physeq.cpp \ src/muscle/phytofile.cpp \ src/muscle/posgap.cpp \ src/muscle/ppscore.cpp \ src/muscle/profdb.cpp \ src/muscle/profile.cpp \ src/muscle/profilefrommsa.cpp \ src/muscle/progalign.cpp \ src/muscle/progress.cpp \ src/muscle/progressivealign.cpp \ src/muscle/pwpath.cpp \ src/muscle/readmx.cpp \ src/muscle/realigndiffs.cpp \ src/muscle/realigndiffse.cpp \ src/muscle/refine.cpp \ src/muscle/refinehoriz.cpp \ src/muscle/refinesubfams.cpp \ src/muscle/refinetree.cpp \ src/muscle/refinetreee.cpp \ src/muscle/refinevert.cpp \ src/muscle/refinew.cpp \ src/muscle/savebest.cpp \ src/muscle/scoredist.cpp \ src/muscle/scoregaps.cpp \ src/muscle/scorehistory.cpp \ src/muscle/scorepp.cpp \ src/muscle/seq.cpp \ src/muscle/seqvect.cpp \ src/muscle/setblosumweights.cpp \ src/muscle/setgscweights.cpp \ src/muscle/setnewhandler.cpp \ src/muscle/spfast.cpp \ src/muscle/sptest.cpp \ src/muscle/stabilize.cpp \ src/muscle/subfam.cpp \ src/muscle/subfams.cpp \ src/muscle/sw.cpp \ src/muscle/termgaps.cpp \ src/muscle/textfile.cpp \ src/muscle/threewaywt.cpp \ src/muscle/tomhydro.cpp \ src/muscle/traceback.cpp \ src/muscle/tracebackopt.cpp \ src/muscle/tracebacksw.cpp \ src/muscle/treefrommsa.cpp \ src/muscle/typetostr.cpp \ src/muscle/upgma2.cpp \ src/muscle/usage.cpp \ src/muscle/validateids.cpp \ src/muscle/vtml2.cpp \ src/muscle/writescorefile.cpp \ src/umuscle_tests/umuscleTests.cpp RESOURCES += umuscle.qrc TRANSLATIONS += transl/english.ts transl/russian.ts