1 Basic Population Genetics mesquite.batchArch mesquite.cont mesquite.correl mesquite.distance mesquite.diverse mesquite.dmanager mesquite.genesis mesquite.leaves mesquite.meristic mesquite.pairwise mesquite.rhetenor mesquite.tol mesquite.align.AlignScoreForTaxon mesquite.align.AlignScoreForTaxonRC mesquite.align.ColorForAlignment mesquite.align.ColorMisaligned mesquite.align.SidePusher mesquite.molec.AAHydrophobicity mesquite.molec.AASize mesquite.molec.AminoAcidProperties mesquite.molec.BLASTSearch mesquite.molec.CharacterGCBias mesquite.molec.ColorByNumber mesquite.molec.CompareBasesWithTaxon mesquite.molec.ConvertToRY mesquite.molec.FetchGenBank mesquite.molec.FillCharSelection mesquite.molec.GCAsNumber mesquite.molec.LowercaseEnds mesquite.molec.MaintainClipMatch mesquite.molec.MeanValueLinked mesquite.molec.NumberPolyInTaxon mesquite.molec.NumLowerCase mesquite.molec.PercentLowerCase mesquite.molec.PropInternalGaps mesquite.molec.PropTerminalGaps mesquite.molec.PropUnambigSites mesquite.molec.SequenceInfoEditor mesquite.molec.SiteProperty mesquite.molec.TargetSeqMatch mesquite.molec.TaxaListHasData mesquite.molec.TaxonGCBias mesquite.molec.TopBlastMatches mesquite.ancstates mesquite.align mesquite.charMatrices.AnnotPanel mesquite.charMatrices.SelectCharsWithProbP mesquite.charMatrices.SelectRndCharacters mesquite.io.ExportCharStateInfo mesquite.lists.CharListAnnotPanel mesquite.mb mesquite.ornamental.Constellation mesquite.ornamental.ManageHyperlinks mesquite.ornamental.PictureWindowMaker mesquite.ornamental.Projector mesquite.stochchar.AsymmetryLR mesquite.stochchar.AsymmMkExplorer mesquite.stochchar.AsymmModelCurator mesquite.stochchar.Brownian mesquite.stochchar.CharLikelihood mesquite.stochchar.GainLossRates mesquite.stochchar.InterpretPagelFormat mesquite.stochchar.InterpretPagelFormatM mesquite.stochchar.LikelihoodInCharacter mesquite.stochchar.MargProbAncStates mesquite.stochchar.StochCharMapper mesquite.stochchar.zMargLikeCateg mesquite.treefarm.AugmentTreeRandomly mesquite.treefarm.AvgTaxonValueAmgTrees mesquite.treefarm.CollessImbalance mesquite.treefarm.EmailTree mesquite.treefarm.MRPMatrices mesquite.treefarm.RandomBranchMoves mesquite.treefarm.RandomlyModifiedTrees mesquite.treefarm.RandomModifTree mesquite.treefarm.RandomResolve mesquite.treefarm.RarefyTree mesquite.treefarm.RearrangedTree mesquite.charMatrices.RandomModRespMatrices mesquite.charMatrices.RandomModifMatrix mesquite.charMatrices.RandomFillWithMissing mesquite.charMatrices.ShuffleStates mesquite.charMatrices.ReshuffleWTaxaByPart mesquite.charMatrices.ReshuffleWithinTaxa mesquite.charMatrices.ReshuffleMatrixByPart mesquite.charMatrices.ReshuffleMatrix mesquite.charMatrices.ReshuffleCharacter mesquite.charMatrices.RarefyMatrix mesquite.charMatrices.SelectDiffering mesquite.charMatrices.SelectMatchingTaxa mesquite.charMatrices.SelectSame mesquite.charMatrices.SprinkleMissing mesquite.charMatrices.BootstrapResample mesquite.charMatrices.RandomFillCateg mesquite.charMatrices.SortsManagerChar mesquite.charMatrices.SortsInCharList mesquite.treefarm.EqualRatesSpSampled mesquite.treefarm.ProbRndTreeModifier mesquite.treefarm.NoiseToBranchLengths mesquite.treefarm.TerminalInstability mesquite.trees.EquiprobableTrees mesquite.trees.EqualRatesMarkovSp mesquite.categ.StateNamesEditor Add AUTHORS Block to File addAuthorsBlock mesquite.basic.ManageAuthors.ManageAuthors New Generic NEXUS block... newBlock mesquite.minimal.ManageForeignBlocks.ManageForeignBlocks Edit Mesquite script showScript mesquite.minimal.ManageMesquiteBlock.ManageMesquiteBlock Add Note On Tree Add_Note_On_Tree newAssistant mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow mesquite.lib.duties.TreeDisplayAssistantD Assign Color to Selected Assign_Color_to_Selected assignColor mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow Remove Color from Selected removeColor mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow Add Info Strip Add_Info_Strip hireDataInfoStrip mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow Show State Names Strip showStrip mesquite.categ.StateNamesStrip.StateNamesStrip Emphasize Less Degenerate Amino Acids emphasizeDegeneracy mesquite.molec.ColorByAA.ColorByAA Show Character Reference Strip showStrip mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip Color Text Color_Text colorText mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow mesquite.charMatrices.MatrixInfoTool.MatrixInfoTool.matrixInfo Data information mesquite.charMatrices.AddDeleteData.AddDeleteData.addTaxa Add Taxa mesquite.charMatrices.AddDeleteData.AddDeleteData.addChars Add Characters mesquite.ornamental.BranchNotes.BranchNotesToolExtra.BranchNotes Annotate Branch mesquite.ornamental.TaxonLink.TaxonLinkToolExtra.taxonLink Go to link mesquite.treefarm.MakeRerootings.AllRerootToolExtra.allRerootings Make All Rerootings of Clade