#!/bin/sh

R_HOME=/home/psgendb/local/pkg/R_language/lib64/R

R_SHARE_DIR=/home/psgendb/local/pkg/R_language/lib64/R/share
export R_SHARE_DIR
R_INCLUDE_DIR=/home/psgendb/local/pkg/R_language/lib64/R/include
export R_INCLUDE_DIR
R_DOC_DIR=/home/psgendb/local/pkg/R_language/lib64/R/doc
export R_DOC_DIR

JRI_LD_PATH=${R_HOME}/lib:${R_HOME}/bin:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64/server:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/../lib/amd64:/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib
if test -z "$LD_LIBRARY_PATH"; then
  LD_LIBRARY_PATH=$JRI_LD_PATH
else
  LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$JRI_LD_PATH
fi
JAVA=/usr/bin/java

: ${CLASSPATH=.:examples}

export R_HOME
export LD_LIBRARY_PATH

if [ -z "$1" ]; then
    echo ""
    echo " Usage: run <class> [...]"
    echo ""
    echo " For example: ./run rtest"
    echo " Set CLASSPATH variable if other than .:examples is desired"
    echo ""
else
    ${JAVA} -Djava.library.path=.:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64/server:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/lib/amd64:/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0.x86_64/jre/../lib/amd64:/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib -cp ${CLASSPATH}:src/JRI.jar:JRI.jar $*
fi