:>"^1 ã@sXdZGdd„deƒZGdd„deƒZGdd„deƒZdd„Zd S) z;Code to interact with the primersearch program from EMBOSS.c@s:eZdZdZdd„Zdd„Zdd„ZdS) Ú InputRecordz¥Represent the input file into the primersearch program. This makes it easy to add primer information and write it out to the simple primer file format. cCs g|_dS)zInitialize the class.N)Ú primer_info)Úself©rúd}x1|jD]&\}}}|d|||f7}qW|S)z4Summarize the primersearch input record as a string.Úz %s %s %s )r)rÚoutputÚnameZprimer1Zprimer2rrrÚ__str__szInputRecord.__str__cCs|jj|||fƒdS)z%Add primer information to the record.N)rÚappend)rZ primer_nameZfirst_primer_seqZsecond_primer_seqrrrÚadd_primer_setszInputRecord.add_primer_setN)Ú__name__Ú __module__Ú __qualname__Ú__doc__rr r rrrrr s   rc@s"eZdZdZdd„ZdS)Ú OutputRecordz»Represent the information from a primersearch job. amplifiers is a dictionary where the keys are the primer names and the values are a list of PrimerSearchAmplifier objects. cCs i|_dS)zInitialize the class.N)Ú amplifiers)rrrrr+szOutputRecord.__init__N)r rrrrrrrrr$s rc@s"eZdZdZdd„ZdS)Ú Amplifierz/Represent a single amplification from a primer.cCsd|_d|_dS)zInitialize the class.réN)Úhit_infoÚlength)rrrrr3s zAmplifier.__init__N)r rrrrrrrrr0s rcCs3tƒ}xå|D]Ý}|jƒs(qq|jdƒrW|jƒd}g|j|s