:>"^Þã@sDdZdd„Zdd„ZGdd„deƒZdd„Zd S) a)Parser for the cellosaurus.txt file from ExPASy. See https://web.expasy.org/cellosaurus/ Tested with the release of Version 18 (July 2016). Functions: - read Reads a file containing one cell line entry - parse Reads a file containing multiple cell line entries Classes: - Record Holds cell line data. Examples -------- You need to download the Cellosaurus database for this examples to run, e.g. from ftp://ftp.expasy.org/databases/cellosaurus/cellosaurus.txt >> from Bio.ExPASy import cellosaurus >> with open('cellosaurus.txt') as handle: ... records = cellosaurus.parse(handle) ... for record in records: ... if 'Homo sapiens' in record['OX'][0]: ... print(record['ID']) ... #15310-LN #W7079 (L)PC6 00136 ... ccs#xt|ƒ}|sP|VqWdS)z§Parse cell line records. This function is for parsing cell line files containing multiple records. Arguments: - handle - handle to the file. N)Ú__read)ÚhandleÚrecord©rú;/tmp/pip-build-ww9dw3qa/biopython/Bio/ExPASy/cellosaurus.pyÚparse(s  rcCs.t|ƒ}|jƒ}|r*tdƒ‚|S)z«Read one cell line record. This function is for parsing cell line files containing exactly one record. Arguments: - handle - handle to the file. z$More than one cell line record found)rÚreadÚ ValueError)rrÚ remainderrrrr9s   rc@s:eZdZdZdd„Zdd„Zdd„ZdS) ÚRecorda{Holds information from an ExPASy Cellosaurus record as a Python dictionary. Each record contains the following keys: --------- --------------------------- ---------------------- Line code Content Occurrence in an entry --------- --------------------------- ---------------------- ID Identifier (cell line name) Once; starts an entry AC Accession (CVCL_xxxx) Once AS Secondary accession number(s) Optional; once SY Synonyms Optional; once DR Cross-references Optional; once or more RX References identifiers Optional: once or more WW Web pages Optional; once or more CC Comments Optional; once or more ST STR profile data Optional; once or more DI Diseases Optional; once or more OX Species of origin Once or more HI Hierarchy Optional; once or more OI Originate from same individual Optional; once or more SX Sex (gender) of cell Optional; once CA Category Once // Terminator Once; ends an entry cCs§tj|ƒd|d%s  M