:>"^« ã@s<dZddlmZGdd„deƒZdd„ZdS)aHandle the SCOP DOMain file. The DOM file has been officially deprecated. For more information see the SCOP"release notes.":http://scop.berkeley.edu/release-notes-1.55.html The DOM files for older releases can be found "elsewhere at SCOP.":http://scop.mrc-lmb.cam.ac.uk/scop/parse/ é)ÚResiduesc@s=eZdZdZddd„Zdd„Zdd„ZdS) ÚRecordzúHolds information for one SCOP domain. Attribues: - sid - The SCOP ID of the entry, e.g. d1anu1 - residues - The domain definition as a Residues object - hierarchy - A string specifying where this domain is in the hierarchy. NcCs2d|_g|_d|_|r.|j|ƒdS)zInitialize the class.ÚN)ÚsidÚresiduesÚ hierarchyÚ_process)ÚselfÚline©r ú1/tmp/pip-build-ww9dw3qa/biopython/Bio/SCOP/Dom.pyÚ__init__s    zRecord.__init__cCst|jƒ}|jdƒ}t|ƒdkr=td|ƒ‚|\|_}}|_t|ƒ|_||j_dS)zƒParse DOM records (PRIVATE). Records consist of 4 tab deliminated fields; sid, pdbid, residues, hierarchy ú éz#I don't understand the format of %sN) ÚrstripÚsplitÚlenÚ ValueErrorrrrrÚpdbid)r r ÚcolumnsrÚresr r r r$s zRecord._processcCsYg}|j|jƒ|jt|jƒjddƒƒ|j|jƒdj|ƒdS)z;Represent the SCOP domain record as a tab-separated string.ú rÚ )ÚappendrÚstrrÚreplacerÚjoin)r Úsr r r Ú__str__9s "zRecord.__str__)Ú__name__Ú __module__Ú __qualname__Ú__doc__r rrr r r r rs  rccs2x+|D]#}|jdƒrqt|ƒVqWdS)zoIterate over a DOM file as a Dom record for each line. Arguments: - handle -- file-like object. ú#N)Ú startswithr)Úhandler r r r ÚparseBs r&N)r"rÚobjectrr&r r r r Ú s0