:>"^@srdZddlmZddlZddlZGdddeZddddZdd Zd d Z dS) a:Code for doing logistic regressions. Classes: - LogisticRegression Holds information for a LogisticRegression classifier. Functions: - train Train a new classifier. - calculate Calculate the probabilities of each class, given an observation. - classify Classify an observation into a class. )print_functionNc@s"eZdZdZddZdS)LogisticRegressionzHolds information necessary to do logistic regression classification. Attributes: - beta - List of the weights for each dimension. cCs g|_dS)z Initialize.N)beta)selfr;/tmp/pip-build-ww9dw3qa/biopython/Bio/LogisticRegression.py__init__!szLogisticRegression.__init__N)__name__ __module__ __qualname____doc__rrrrrrs rcCst|t|kr$tdt|}|ddhkrNtd|dkr`d}t|t|dd}}|dks|dkrtdtj||f|}||ddddfms ztrain..)len ValueErrorsetnumpyZonesZ transposeasarrayZzerosexpdotlogsumiterfabsidentityZlinalgZsolve RuntimeErrorrr)xsZysZ update_fntypecodeclassesNZndimsXZXtyrZMAX_ITERATIONSZCONVERGE_THRESHOLDZstepsizeiZold_betaZold_llikebetaXpZlogpZllikWZXtypZXtWXdeltalrrrrtrain&s\    !  ,           r,cCsPtjdg|}tjtj|j|}|d|}d||gS)zCalculate the probability for each class. Arguments: - lr is a LogisticRegression object. - x is the observed data. Returns a list of the probability that it fits each class. g?r )rrrrr)r+rr'r(rrr calculateqs r-cCs+t||}|d|dkr'dSdS)z%Classify an observation into a class.rr )r-)r+rZprobsrrrclassifysr.) r __future__rrZ numpy.linalgobjectrr,r-r.rrrrs   K