Index of /~birch/birchhomedir/lib-linux-x86_64/trinity/trinity-plugins/bamsifter/htslib/test

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]auxf#values.sam2022-03-11 09:18 751  
[ ]auxf#values_java.cram2022-03-11 09:18 5.0K 
[ ]auxf.fa2022-03-11 09:18 29  
[ ]auxf.fa.fai2022-03-11 09:18 18  
[TXT]bgziptest.txt2022-03-11 09:18 15  
[ ]bgziptest.txt.gz2022-03-11 09:18 181  
[ ]bgziptest.txt.gz.gzi2022-03-11 09:18 88  
[ ]c1#bounds.sam2022-03-11 09:18 148  
[ ]c1#clip.sam2022-03-11 09:18 337  
[ ]c1#noseq.sam2022-03-11 09:18 433  
[ ]c1#pad1.sam2022-03-11 09:18 388  
[ ]c1#pad2.sam2022-03-11 09:18 527  
[ ]c1#pad3.sam2022-03-11 09:18 665  
[ ]c1#unknown.sam2022-03-11 09:18 429  
[ ]c1.fa2022-03-11 09:18 15  
[ ]c1.fa.fai2022-03-11 09:18 14  
[ ]c2#pad.sam2022-03-11 09:18 847  
[ ]c2.fa2022-03-11 09:18 14  
[ ]c2.fa.fai2022-03-11 09:18 12  
[ ]ce#1.sam2022-03-11 09:18 341  
[ ]ce#2.sam2022-03-11 09:18 645  
[ ]ce#5.sam2022-03-11 09:18 1.8K 
[ ]ce#5b.sam2022-03-11 09:18 1.8K 
[ ]ce#5b_java.cram2022-03-11 09:18 6.6K 
[ ]ce#1000.sam2022-03-11 09:18 315K 
[ ]ce#large_seq.sam2022-03-11 09:18 2.0M 
[ ]ce#supp.sam2022-03-11 09:18 547  
[ ]ce#tag_depadded.sam2022-03-11 09:18 1.6K 
[ ]ce#tag_padded.sam2022-03-11 09:18 1.6K 
[ ]ce#unmap.sam2022-03-11 09:18 1.3K 
[ ]ce#unmap1.sam2022-03-11 09:18 2.7K 
[ ]ce#unmap2.sam2022-03-11 09:18 5.4K 
[ ]ce.fa2022-03-11 09:18 1.0M 
[ ]ce.fa.fai2022-03-11 09:18 230  
[ ]colons.bam2022-03-11 09:18 268  
[ ]colons.bam.bai2022-03-11 09:18 424  
[TXT]compare_sam.pl2022-03-11 09:18 6.3K 
[TXT]cross_validate.sh2022-03-11 09:18 4.2K 
[ ]emptyfile2022-03-11 09:18 0  
[ ]faidx.fa2022-03-11 09:18 289  
[ ]fastqs.fq2022-03-11 09:18 47K 
[TXT]fastqs_README.txt2022-03-11 09:18 4.8K 
[TXT]fieldarith.c2022-03-11 09:18 2.4K 
[ ]fieldarith.sam2022-03-11 09:18 916  
[TXT]formatcols.vcf2022-03-11 09:18 240  
[TXT]formatmissing-out.vcf2022-03-11 09:18 226  
[TXT]formatmissing.vcf2022-03-11 09:18 226  
[TXT]header_syms.pl2022-03-11 09:18 3.5K 
[TXT]hfile.c2022-03-11 09:18 12K 
[TXT]hts_endian.c2022-03-11 09:18 17K 
[ ]index.bam.bai2022-03-11 09:18 776  
[ ]index.bam.csi2022-03-11 09:18 130  
[ ]index.bcf.csi2022-03-11 09:18 144  
[ ]index.cram.crai2022-03-11 09:18 83  
[ ]index.sam2022-03-11 09:18 53K 
[ ]index.sam.gz.bai2022-03-11 09:18 776  
[ ]index.sam.gz.csi2022-03-11 09:18 130  
[TXT]index.vcf2022-03-11 09:18 67K 
[ ]index.vcf.gz.csi2022-03-11 09:18 159  
[ ]index.vcf.gz.tbi2022-03-11 09:18 213  
[DIR]longrefs/2022-03-11 09:18 -  
[DIR]maintainer/2022-03-11 09:18 -  
[ ]md#1.sam2022-03-11 09:18 1.0K 
[ ]md.fa2022-03-11 09:18 45  
[ ]md.fa.fai2022-03-11 09:18 13  
[DIR]mpileup/2022-03-11 09:18 -  
[ ]no_hdr_sq_1.bam2022-03-11 09:18 1.7K 
[ ]no_hdr_sq_1.bam.csi2022-03-11 09:18 94  
[ ]no_hdr_sq_1.expected.sam2022-03-11 09:18 2.0K 
[TXT]noroundtrip-out.vcf2022-03-11 09:18 325  
[TXT]noroundtrip.vcf2022-03-11 09:18 271  
[TXT]pileup.c2022-03-11 09:18 6.8K 
[ ]range.bam2022-03-11 09:18 13K 
[ ]range.bam.bai2022-03-11 09:18 360  
[ ]range.cram2022-03-11 09:18 11K 
[ ]range.cram.crai2022-03-11 09:18 94  
[ ]range.out2022-03-11 09:18 3.4K 
[ ]realn01.fa2022-03-11 09:18 719  
[ ]realn01.fa.fai2022-03-11 09:18 21  
[ ]realn01.sam2022-03-11 09:18 1.8K 
[ ]realn01_exp-a.sam2022-03-11 09:18 2.1K 
[ ]realn01_exp-e.sam2022-03-11 09:18 2.1K 
[ ]realn01_exp.sam2022-03-11 09:18 2.1K 
[ ]realn02-r.sam2022-03-11 09:18 3.7K 
[ ]realn02.fa2022-03-11 09:18 4.2K 
[ ]realn02.fa.fai2022-03-11 09:18 17  
[ ]realn02.sam2022-03-11 09:18 2.8K 
[ ]realn02_exp-a.sam2022-03-11 09:18 3.7K 
[ ]realn02_exp-e.sam2022-03-11 09:18 3.7K 
[ ]realn02_exp.sam2022-03-11 09:18 3.7K 
[TXT]sam.c2022-03-11 09:18 62K 
[TXT]simple_test_driver.sh2022-03-11 09:18 5.5K 
[ ]tabix.out2022-03-11 09:18 98  
[DIR]tabix/2022-03-11 09:18 -  
[TXT]test-bcf-sr.c2022-03-11 09:18 4.8K 
[TXT]test-bcf-sr.pl2022-03-11 09:18 17K 
[TXT]test-bcf-translate.c2022-03-11 09:18 8.7K 
[ ]test-bcf-translate.out2022-03-11 09:18 869  
[TXT]test-logging.pl2022-03-11 09:18 2.5K 
[TXT]test-parse-reg.c2022-03-11 09:18 6.9K 
[TXT]test-regidx.c2022-03-11 09:18 16K 
[TXT]test-vcf-api.c2022-03-11 09:18 18K 
[ ]test-vcf-api.out2022-03-11 09:18 2.0K 
[TXT]test-vcf-hdr-in.vcf2022-03-11 09:18 2.0K 
[ ]test-vcf-hdr.out2022-03-11 09:18 1.3K 
[TXT]test-vcf-sweep.c2022-03-11 09:18 3.7K 
[ ]test-vcf-sweep.out2022-03-11 09:18 92  
[TXT]test.pl2022-03-11 09:18 35K 
[TXT]test_bgzf.c2022-03-11 09:18 31K 
[TXT]test_index.c2022-03-11 09:18 2.8K 
[TXT]test_kstring.c2022-03-11 09:18 5.6K 
[TXT]test_realn.c2022-03-11 09:18 4.9K 
[TXT]test_str2int.c2022-03-11 09:18 5.9K 
[TXT]test_view.c2022-03-11 09:18 14K 
[TXT]thrash_threads1.c2022-03-11 09:18 1.6K 
[TXT]thrash_threads2.c2022-03-11 09:18 1.6K 
[TXT]thrash_threads3.c2022-03-11 09:18 1.7K 
[TXT]thrash_threads4.c2022-03-11 09:18 2.2K 
[TXT]thrash_threads5.c2022-03-11 09:18 2.1K 
[TXT]thrash_threads6.c2022-03-11 09:18 3.3K 
[TXT]thrash_threads7.c2022-03-11 09:18 3.6K 
[TXT]thread_pool.md2022-03-11 09:18 2.9K 
[ ]xx#MD.sam2022-03-11 09:18 1.0K 
[ ]xx#MD2.sam2022-03-11 09:18 1.1K 
[ ]xx#blank.sam2022-03-11 09:18 71  
[ ]xx#large_aux.sam2022-03-11 09:18 884K 
[ ]xx#large_aux2.sam2022-03-11 09:18 651  
[ ]xx#large_aux_java.cram2022-03-11 09:18 22K 
[ ]xx#minimal.sam2022-03-11 09:18 254  
[ ]xx#pair.sam2022-03-11 09:18 304  
[ ]xx#repeated.sam2022-03-11 09:18 298  
[ ]xx#rg.sam2022-03-11 09:18 517  
[ ]xx#tlen.sam2022-03-11 09:18 1.0K 
[ ]xx#tlen2.sam2022-03-11 09:18 1.1K 
[ ]xx#triplet.sam2022-03-11 09:18 267  
[ ]xx#unsorted.sam2022-03-11 09:18 320  
[ ]xx.fa2022-03-11 09:18 86  
[ ]xx.fa.fai2022-03-11 09:18 44  
[ ]hts_endian2022-05-13 14:29 35K 
[ ]fieldarith2022-05-13 14:29 2.8M 
[ ]hfile2022-05-13 14:29 2.8M 
[ ]pileup2022-05-13 14:30 2.8M 
[ ]sam2022-05-13 14:30 2.9M 
[ ]test_bgzf2022-05-13 14:30 2.9M 
[ ]test_kstring2022-05-13 14:30 31K 
[ ]test_realn2022-05-13 14:30 2.9M 
[ ]test-regidx2022-05-13 14:30 2.9M 
[ ]test_str2int2022-05-13 14:30 27K 
[ ]test_view2022-05-13 14:30 3.3M 
[ ]test-vcf-api2022-05-13 14:30 3.3M 
[ ]test_index2022-05-13 14:30 3.3M 
[DIR]fuzz/2022-05-13 14:30 -  
[ ]test-bcf-sr2022-05-13 14:30 3.5M 
[ ]test-vcf-sweep2022-05-13 14:30 3.3M 
[ ]test-bcf-translate2022-05-13 14:30 3.3M 
[ ]test-parse-reg2022-05-13 14:30 2.8M 
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