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"< <#A @R #_ #l B${ %  %  J&   & & & r  & ' 3' 7 A b V'q ' (   ( ^ ) u) ) W*  +%> H i +x , i, , - L- - - @ .*8 ?a m.p . +/  / /_ < /L 0Z 1h 2m x 2} 4 4  6 7 7 7 e `8! , 81 < 9A K@T pf 2:kA @ @n)> R@\g|* 8 @QY d : : ; ?;  x; ;  s(J ;Z ]<h <v ={  = 4 = e> >K >  > ?GU \} =? ? ? 00 3I7^Tflt o @ j@ @    !Iq#1 {!@B @R KAW =q Av + q Gp# LTH"/x_ j A ?B B  ) 3Um -BXp/Gq x B   O O 4 4   G  G 3 3  & e* e1 5 < @ G )K )R V ] a   `p| 0x`@  t   X@h@.symtab.strtab.shstrtab.rela.text.data.bss.text.unlikely.rodata.str1.8.rodata.str1.1.rodata.rela.debug_info.debug_abbrev.debug_loc.rela.debug_aranges.debug_ranges.rela.debug_line.debug_str.comment.note.GNU-stack.rela.eh_frame @@h & , 1 @2 O2 ^ [k+!hf@- w?-C0C0@(0  m@X0]0538@pPX hbntseq.o/ 0 0 0 644 78872 ` ELF>-@@AWAVAUATIUSHE1E1HHdH%(H$1H.ann@HUMHDE Iľ1Uu9qL1KDC 1HLAI(D9mt:LH]1LSHKHS :uL1L1LE1LHH.amb@MDEHHUIž1Et0LHE LID@ HH19]uLLH$dH3%(uH[]A\A]A^A_AWAVAAUATkUSIHX H|$Ht$HT$ 0dH%(H$H 1HLHD$HKLC HT$8HHž1tht8HT$1ft H uDHHT$1H\$HD$8Aq(Hc{HSHCNLl$@E1IMHL$(f.KLHL41IVyLE1LIF)fD'HCIM)IH uI~LufIF INMF HT$81HgHD$8Ht$IAGI9F~=HFH|$(IF 8HbHHt$HHD$HL$4HT$8HL@1tHL$HL$HD$HH9D$8tHD$L$49HuHL$AuYHA HHt$ HL$HA(HH$H dH3 %(HX []A\A]A^A_ùHcAHL$QHA ~E1E1Ll$@0DHD$8AIHD$@C HD$D9`IH@ J0HT$81MHHKtDf.AWAVHAUATUSHHXH|$@dH%(H$H1HH$@HHH$@HHH$@H$@H|$@HIHD$ H$@ HHHHHD$8LH)A(ANIHD$(D$$DHD$H\$(H@HDH$AE A9EAEAU 9p Ή Ή Ή  Y\$ fH*YXH,9ʉL$ sBD$ )þHHHHAmM}XD$4H<$WHwtH)ȍ uAA!D<D|$ H<H|$H|$L$ ALIu MMM]IH2D"HA A A1ɾ11SMIE D$D$D$A;E|$ 9vMAI}AJ4)I} J4IEA)IE I}IAE|$ ImAED$ A}|$4AE D$ D$ )HHHھHD$ A9ED$ D$AXf|$MMIɋ8M]I} MD$H AARIrt"fH)ȍ uȉ‰!1ƉщHH|!DEAAu*f!ډЉHH|DEAAtLHD!Ɖ7A9UvXA4uMI4H>LIu MMM]IH2D"HA AA111UMIE D$D$D$A;EDDHAH\$ى\$ D$07A$T$ \$49ډDL$ Ht$>I}AH4)HrI} H4IEA)HDIE AED$ XI}AH4)HI} H4IEA)HAUIE D$ X1!DHtkATUHSH(HtH} 1E1E~+HEAH|HEH| H(D;e|H}[H]A\@f.AWAVAUATUSHHhHt$0T$HЃLH)кD$OLLHt$0HHLLH$XdH3<%(HHh[]A\A]A^A_fLT$LT$(d$H} Hct$AHLHE HcMIV@INd$8H}HcD$8AH4HHcUHESHELA/HHXHHHHHHHUIHBHHIHH)I<HHJHHH1HH]HHHЉHHAHH ЃA7HHEHXH]uDf.AUATAUSI1HfADݺLyHc9t[I4ĺIHcP9'I4ĉLLH1[]A\A]@ItfH 1H[]A\A]DH97~UO~TLGDQ1D9Dt0K;t(|'z9~ 9HcHI;4L }Љ9ø1f.AUATUSHL'I9}I9aH9IHHZI9Kt$H)HL9A}(IsI9 KD$H)HHA9ŸADH[]A\A]qHATIUHSt IA$}~KHU HcE1LDDAD9~.A 8HcHHHcpLILI9}I9|D91[]A\f.M9|H9}C D)H9D|BD)H9AVIAUATUHS}HO$6L9IOHHIII9~ I9LH)߾I8I9XIt$IH)M)I9}9Hf.HHHHT҃WI9u[]A\A]A^HHH)I9~f.HHt у@4HI9u[]A\A]A^I1[]A\A]A^@f.AWAVIAUATIUSILMH(LdH%(HD$1IH4$L9}I1ML3LM1LM9L;mII9LLAHHIGHHcXLLM9HH4$MMLD$LL$M$H9]HNMHMI?I$HILL$HEM$HT$HL)H9tBAH=SAQMQAWRP1HEH0I+$H;D$H|$dH3<%(LH([]A\A]A^A_HLHsL)AHIHIGHHHc@H)HI)DAM$H=SAQMPj1t$0uH0w%lld %d %u %d %s %s %lld %d %d %lld %d %c Unexpected end of filebntseq.cr%lld%d%u%lld%d%d%u%s (null)rb%lld%d%sError reading %s : %s Parse error reading %s .ann.amb.pac.altwb(null)frb <= re*beg <= mid && mid < *endseq && *end - *beg == leninconsistent .ann and .amb files.Usage: bwa fa2pac [-f] [] [E::%s] begin=%ld, mid=%ld, end=%ld, len=%ld, seq=%p, rid=%d, far_beg=%ld, far_end=%ld bns_fetch_seqbns_fetch_seqbns_get_seqbns_intv2ridbwa_fa2pacadd1bns_fasta2bntseqkh_resize_strkh_init_strbns_restore_corebns_dumpp= ף??R1 o8intii0 $ b     ( 0 8 @ H P X \` bh bp bt px F T h x !{ ) * + , .- /b 1~  \ \ b b+ x $   Zpb b i?   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C TC v w-w v ]-] \ v V" Z \Z \ Q\ v \ P v V-P w w R r  R-w S S  \-SP`U`VUUUx0xVUUx0\|\UUTSwQw"&P&^^6:P:VV0P__H__P_;8vwwPw;8vTvbqTqv9 9\v ;@<$vP9vvp2$s2$<CsCQ\\\\PwSUw wT_P__VV^^:>Z>pv9v0=][ ]H]0[[4vQy[[Hu[!S-HSm SHSqu4 vu4 vv40u4p"u4" v4" s2$p2$480p"7UU7V7<U<vVv{UT9\9<T<x\x{TPP06S<uS P;]<G]Gk UUU0U00Q0Q0RQRR%U%ZVZeUeUVTZSZeTeoToS)Q)eQeyQy[Q6 |s,6F |t,FM |{,0@P@Z]NVP%U%ZV""S6ZV6F6FTUV9UT9TQSQS P 9SR\9R0X9XRR9RUR9U0P#0#%P%7079P@U^U?^?@U@RU@TVT9V9@T@RT@SQSVRVpQpS8S@JSJRqpq0*(@SRSVrq'VfRpR]=]@RR@X@X@RX@0@P@I0IRPTS@Q~0up#up02qs#28qsXTs |"`U._.UU_QUQeUej_joU`TawawTw88QwQ`T`ow`Q\QQQ\Q[Q[o\`R]RRQ]QVRVo]`XVXoV`Y^YYQ^QiYio^'Y'QYQjoSPQSjoS rs* }s* rs* ru* r*.=P=_PPQ_jnPno_U._.UU_QUjoURRQ Q Q,o "%8=Xgnp/K)hmu d <7 -<X r< ' _ E _E 48;S(8; $( $( rPepepv|R -P] v - v -  -\nsxnsx Q[P~7Q|8v /usr/include/x86_64-linux-gnu/bits/usr/lib/gcc/x86_64-linux-gnu/5/include/usr/include/usr/include/x86_64-linux-gnu/sysbntseq.cstring3.hkhash.hstdio2.hbntseq.hstddef.htypes.hstdio.hlibio.htypes.hzlib.hstdint.hkseq.hgetopt.hutils.hmalloc_wrap.herrno.hstring.hstdlib.hassert.h +JUX+U<+.[XY=7SguY?Cy.YBz<Xi=CY=uv\+RxfRxXxX`x6ZV>ZY=4X[Vt!'JLX=Y;Kq.NN"dI=.kXXk "e<g"VD l,)J$T=}/K?DJ<<DJ:8X< Y=ZWs>ZKYK~X=~JX~Z:zX$KKWYYW'W-K:=&uuMu=yueX!!WK`;=;Ǖot.i77OX!}I=B==HLVɻ;=}t+h}-<!28N8?}8p__streamfgetcsize_tsizetyperef_idabsent__fmtint32_tfar_end_IO_save_endbns_fasta2bntseq__func__have_IO_write_basebns_restore_coreamb_filename__builtin___stpcpy_chk_lockkseq_destroy_IO_save_baseerr_fflush_chainerr_fwrite_cur_columnnew_vals_err_fatal_simple_corevalsseq_reverselong int__builtin_memset__fprintf_chkbwa_fa2pac_IO_marker__s2_lenseed__stpcpy_chk__assert_failkh_str_tsigned charuint8_t_IO_FILEis_eof__PRETTY_FUNCTION__fscanfunsigned charfclosefp_pacnst_nt4_tablecharm_seqsqualnew_flagsupper_bound_IO_lock_t__errno_locationambs__kstring_tflags_IO_read_ptris_altbns_fetch_seqstrcmp_posstdinbeg_f__s1_len_markerslrand48err_fclosekseq_readprefixleftwrap_realloc_offsetoptind/home/birch/BIRCH/local/install/quast-4.6.3/quast_libs/bwa__builtin_fwrite__kstream_tlong unsigned intstrcpy_flags2_IO_read_basekh_get_strbns_cnt_ambiferror_unused2gzFile_sargc_old_offset__strcpy_chkm_pacGNU C11 5.4.0 20160609 -mtune=generic -march=x86-64 -g -O2 -fstack-protector-strongsitegetopt__stack_chk_failkeys__chrightlong long intbns_intv2ridfnamecommentis_revdoubleadd1_IO_write_endalt_filenamemaskkh_resize_strbns_deposstrerrorbntseq_terr_xzopen_corekstream_t_IO_buf_base__isoc99_fscanfunsigned interr_xopen_core__pad1__pad2__pad3__pad4__pad5_sbufwrap_callocrid_brid_ebntann1_t__builtin___strcat_chk_flagsoffsetkhint_t_modeubyte_toff_tl_pacpos_fscanres__ac_HASH_UPPERgzFilen_occupiedFILEbegin__builtin___strcpy_chkkh_put_strpac_filenamebntamb1_tsizelong long unsigned interr_fprintfkseq_t__off_tbadreaderr_fatal__strcat_chkwrap_malloclast_charkhint32_twrap_strdup__builtin_strcmpmemset_IO_backup_base_shortbufnew_n_bucketsm_holesbns_pos2rid_next__off64_tbns_restoren_bucketssrand48fopenargvbns_dump_IO_buf_endnew_keysnew_masknamefprintf__srcend_fn_holesstderrshort intkstring_tbns_get_seq_vtable_offset__destlastsfp_faerr_gzclosefor_only_IO_read_endann_filenamen_seqsannoannsuint32_tbns_destroykseq_init_filenon_ambsfreekh_init_strstrcatbntseq.cshort unsigned intstdout_IO_write_ptrkh_destroy_strint64_t__ac_X31_hash_string__lennextkh_cstr_tfar_begfwritelastGCC: (Ubuntu 5.4.0-6ubuntu1~16.04.9) 5.4.0 20160609zRx LBBG B(D0A8P 8A0A(B BBBA LlBBH B(F0A8JA? 8A0A(B BBBA L BBE B(F0A8J) 8A0A(B BBBA , rGAD XDBL<BBB B(A0A8J ( 8A0A(B BBBJ HBBG A(K0l (C ABBE o(F ABBc8BBA A(D0d (A ABBD ,(EDD e ABK \XEEB A(D0 (A BBBD @ (A BBBA J(A BBBxBBE B(D0A8M`hBpDxBFAT`j 8A0A(B BBBH ThGpIxBFCI`  &x 4hBPPK^@ l0        /;KU[bn Pr&08FQ^ipwJc@`bntseq.c__func__.5064__func__.5085__func__.4975__func__.5009__func__.5182__func__.5157__func__.5203__PRETTY_FUNCTION__.5222__func__.5246__func__.5270__PRETTY_FUNCTION__.5268.LC26.LC27bns_dump__stpcpy_chkerr_xopen_coreerr_fprintferr_fflusherr_fclose__stack_chk_failbns_restore_corewrap_calloc__isoc99_fscanferr_fatalfgetcferrorwrap_strdup__errno_locationstrerror_err_fatal_simple_corebns_restore__strcpy_chk__strcat_chkfopenwrap_mallocstrcmpfreememsetwrap_reallocbns_destroybns_fasta2bntseqkseq_initsrand48kseq_readlrand48nst_nt4_tableerr_fwritekseq_destroybwa_fa2pacgetoptoptinderr_xzopen_coreerr_gzclosestderrbns_pos2ridbns_intv2rid__assert_failbns_cnt_ambibns_get_seqbns_fetch_seq__fprintf_chk9"> F U#k r$ $ $ $ $%&"  -#C J$` '|$%&'  J) S! +#C UJ*^ c j+y,- 3  + J ) g**8 B JP., l  J t. ^*   J%.0/70G&Q SV [#r ^*  1& u #/ J8 B) x*'3 4,36 >4S3] e4(3 4 S5 x J) h J67 ,! ,7 8@ 8I 8Q 8[ 9@ 7 ,# + Q h] Ji 6 h J 6 : h J; h J;8 h J&6G:X hj Jo; h J; h J; h J;D'f&t8888> P J#)7?= PG JV)\ Pf Jy) P J)"  P#@# K( J;.X Kb Jg.Ai B K J;:@YCCC%&!<D8! 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'##J0#K:#^#Jq#K}#9#]##$2$K$g$ +p$  ,y$ D,~$8$$'$J$P%;%Z;%JO%PY%}x%J%P%%J%P%%P%& &!8&X&p&&&&J&P&& V ' ' +' ,0' 8;' ,I' i-N' Y' -h' -m' aw'@'P' 2.'k'('''(@(S(('F(/v( (( ^.( ( ( .( .( I( g/( ]() /#) 502) 07) xB) 1G) ]R) }1W) cb) 1g) q)0~)) 1)  2) 42)6) W2) z2) 2)**N*+*8*JL*0l* w** 2* * 3* J3* * 3* * 4* e4* I* 4+ 4 +)+ 4+@K+ V+ |5f+ 6v+ 6+ .7+ 7+ 8+ a+ +  + r8+ 8++ + W9, w, z9,/,JC, _, uj,`, 9, z:, f;, ;, <, <, , =, ;, >- x- q>,-  ?1- ;-D- aN-[-c- Ps- ?|- =@- }@-Q- - @-|-`--4-` .. 0. @6.T.(t..Q..J..j..J //o./ D/ N/ Y/ pd/ o/ / /B/ z/ / z/ J/ J/ / / / / / / ./ ./  /  / / / / 0  0 0 0 Q0 Q 0 m$0 m+0 /0 70 9;0 9B0 F0 N0 R0 X0 ]0 wa0 sg0 wl0 p0 7v0 {0 0 0 0 0 <0 <0 0 0 0 0 0 20 20 0 0 0 0 0 0 #0 #0 *0 *0 0 1  1 1 1 -1 1 '#1 '*1 .1 51 91 @1 D1 K1 HO1 H^5  q     8 P T'' j ' j ' , ( , 9(  Q(  y( L ( L E.(2 6)2 6)P@ -h@ -@`@`  pP@,\@`.symtab.strtab.shstrtab.rela.text.data.bss.rodata.str1.1.text.unlikely.rodata.str1.8.rodata.rodata.cst8.rela.debug_info.debug_abbrev.rela.debug_loc.rela.debug_aranges.debug_ranges.rela.debug_line.debug_str.comment.note.GNU-stack.rela.eh_frame @o@& ,12 @ O2 ^!fH"xX"V1s@O SkXA@P(p 70@*0gWz@*0ѩ050@+,! ؽbwa.o/ 0 0 0 644 87280 ` ELF>M@@HHtXHfDHHHrRt8\uHVv@tt0@nt:@rtD@\u\HrRHu H H HAWAVE1AUATE1USHHE1HH|$Ht$8D$fHHtH#D$D93:D$HH4@HLA7IL+H{IvIMH:/ IcĹ#L,@ILl$MIE1H{H{@IE%HIE1H{HtH{X&I}IE AL$AHAEEeL$HUH}HvHrH 79/HD$#Ml0IE1H}]H}@IE%HIE1H}HtH}X&I}IE At$AEAAAuD;t$AEu.Ht)HxH=1HD$8D HHL[]A\A]A^A_fDDd$fH{($J0D$fDH|$HT$ HL$H|$HJt/DpHL$HT$ H H{fH}($H|$ HT$HL$0Ht$(HT$H|$ HHTDPHt$(HL$0HuH}H=1fDAWAVIAUATUSH8|$,HT$HL$E11ɃH$HD$Hl@1۸Ht$ MIHIHIuI}8CI9IUH[HHIIUITIUITIUITIU IT IU(IT(IU0IT0IU8IT8IU@IT@IUHITHIUPITPIUXITX1I0L9tXI0L9uMMLt$ tfL9d$HcD$,K,dAHL<@II0K>H $H)KD>HD)KD>HD)KD>HD)KD> HD) KD>(HD)(HD$H|$H4$H0D'Lh_H8[]A\A]A^A_L9t$KvIUIHH$HIUHPIUHPIUHPIU HP IU(HP(@M`ALATI:@HD$Hu6`HD$H<$AWH$AfDHH4@HD$HfDMK4HtH|$tqH|$HDgHH4H,8HcD$,HHL<@II0H<$AZH$C1AE11`E1H$HcD$,1A`L<@II0I119ADDEHHuAAIuHBHHH9ufAWAVAAUATEUSHHH$H$ t$L$H$H$HD$8H$H|$ L$dH<%(H$1HHD$@HD$ptHD$ Ht$H9$H$H9$} 1H;$FH$H$LD$xHDL$H+$IDL$H;\$xt6LHD$pH$dH3<%( HĨ[]A\A]A^A_H$H9$$t?$H|$8VHHcHH|D2HH@pJH9u1HH~;HA H)AAHHHHT$xA HT$xHHH9EHc$H9u{H\$@Ht0$HD$p$LD$81AE1AAHHD9Au$fffҍPEA*A*Љ+D$+T$*^ X,f*^X,9LHT$x+$1)Nƍ\A9DO˃D9DMɃ=DL$CHIAHD$xLPt$PD$ PATD$@PAVD$LPHt$x$0H@AEH|$ ?HD$@H1H$H9$H|$p,HLHcHD$=HD$D$d1D$D$LAgfffD$`L|$XI@HD$H|$pƋ\$HZHcD$`Ht$8SLcT$LLT$XL L\MIAA8E1H$u7McHEEA))Y0ш^uLMMcMM9xHD Hc]HuMB/AHt$ImL9rdHA7HLT$0L\$(H HHH кIIL IIL IIL L`LLT$0L\$(HǃD$B/1/IIM9HD$@t$Ht$`t$LHt$HHt$9VE1L|$XMH$Agfffu @McHEFA))Da0DfuH]IcHL9HDfDHcDDeHuDd$Dd$dLHkI9wMHA7HH HHH HHH HHH кHHH HpHHD$ /H|$pD H$H9$>$/$HD$8WH|HcHfD2HH@pJH9uCLHHLT$PL\$0I LL$(LHI LHI LHL AIIL L`LLT$PHL\$0LL$(DLmM9rdLA7HLT$0L\$(L HHH HHH кIIL IIL L`LLT$0L\$(H/0B/DtYt$Ht$`t$dHt B9t$Ht$L,1Dʾ11H|$x~+@ADH5HHH;D$x|H5 11L|$(Hl$0HD$H\$8+H5HA9H5 L|$(Hl$0HT$xE1L$uAIAwA))Di0EhuH]HcHL9^HDfDHcDDmHuMcIB/ImI9wPHA7HH HHH HHH HHH кIIL L`LHNjD$HB/^/LcL$LHHl$hHl$NT(HD$PM)LL$XADLkM9D|wdLA7HLL$0LT$(L HHH HHH HHH IIL LbLLL$0LT$(HM9D<B/LrHl$hHD$PHl(HD$@t$H1t$d/HAHHH HHH HHH HHH HHH кLXLL\$L\$HDd$Dd$dILI]H9rPHA7HH HHH HHH HHH кHHH HhHHB/0IMIE1HAHHH HHH HHH HHH кIIL L`LHMLmM9rPLA7HL HHH HHH HHH кIIL L`LH/0B/Ht$Ht$Ht$Ht$Ht$Ht$HD$HPAQAAPAHXfATUISxHžHcHcHLHL$+H.64.bwtHI$HtHD+H[]A\DA$.bwtAD$HHtHA$H[]A\H1AUATUSHHHHHxAHHHHHH.bwt@HHIHLD.saHHHHL[]A\A]DE1~H=1HL[]A\A]AUATIUSAHHJA0HAHAuHHH[]A\A]HHHCCH@E1H HPHDHIUHPIUHPIUHPIUHP IU H@(IE(ID$HcXHp HHIID$Hx ID$K<>HcPHpHHHLID$PE1E1H@AJt(HHt$Ht$HhI<HHID$H@Jt( HHt$Ht$HhI<HHID$H@J|(ID$H@J|( I(ID$D9xbHxID$AfLH(HEHHHHHL,+LIt$H<HII|$I|$ID$ID$HL[LL]A\A]A^A_fAUATIUSHHH?H1HxHtI9tx uDtlDMD9t)=~ H=Aع1L1H5HH1[]A\A]DU~1E1$f.1AH(D9e~EHHEPHp1HELuH5 AH(D9eMFH5HUH[]A\A]DG1E1$S1H HHHH9t8 1ۅ~H=1H1[HHH^HHPL@JvTtPL @tH1~@wH1L)H~!tTHr@wH[ËBH=1 H=HH?@tfDAUATUSHHHHt{HHLcIItHAAT$B( HHHcHHHHHH[]A\A]ffDHH[W::%s] the 2nd file has fewer sequences. [W::%s] the 1st file has fewer sequences. [E::%s] fail to locate the index files [W::%s] %d @SQ lines provided with -H; %d sequences in the index. Continue anyway. [E::%s] the read group line is not started with @RG [E::%s] no ID at the read group line [E::%s] @RG:ID is longer than 255 characters bwa.cACGTNTGCAN* Global bandwidth: %d * Global ref: * Global query: kstring.hrb[M::%s] read %d ALT contigs k == l_mem@SQ @SQ SN:%s LN:%d AH:* %s @RG ID:bwa_insert_headerbwa_set_rgbwa_print_sam_hdrbwa_idx2membwa_mem2idxbwa_mem2idxbwa_idx_load_from_diskbwa_idx_load_bwtbwa_idx_infer_prefixkputckputwbwa_gen_cigar2bseq_classifykseq2bseq1bseq_read?4 D"intFhaa0 6 4    ( 0 8 @ H P X n` th 4p 4t x T { z  ! ) * + , .; /4 1  n n t 4= a M6 a MZ { 4 ʼnm  . t pos  0m 3t 7F( ) *len + , gi -9 . / /  0O 2 3len 4amb 5a  60 8K 9 : ;9 Q ?W( @,D`. /oL20 1o0 2o8bwt3@ 5H74H8oPsa9X o M9 9 Mo:z0ybwtybnspac 4  mem(].(0 4id4    seq   sam (!4.l;m;st/ @ buf 4end4 4fp7 . .seq.0 .H 4`f7h>4c>4s>buf@lA4xA4. a M h Ms_4 _ _!"W"[f4% f!#O4A__cO4lh lh l" h 2 2 2 2;""9 9 9 9;N4 N N4 N;$ %s&p&q! ks! s!   = h M  '* X(*4)n_*(*(**ks,X*ks2,X+-4*m-4*n-4+. ,n -9 ../2- : . . 01 2 3> 3T 3Q#3R 2 3p 3T 3Q%3R 2 3 3T 3Q&3R /34 33T 3Q$3R -> ../2- ?& . . 01 2 3 3T 3Q#3R 2 3 3T 3Q%3R 2 3 3T 3Q&3R /34 33T 3Q$3R 5G} .64!33T13Q 3R 5"2 7 64!33T13Q 3R 2,3 3Us2,3 3Uv273C3U3Q 3R73X 4,33Uv= hn M ^8MY )nM4(M )mM)sepM *iO4+O4P nP;mP;aP *aP,1 9 d:S;:S;/B32733U|3Q 3RT3X 2733Uw3Q 3RW3X 4733Uw3Q 3RZ3X  ! M h1 M !8cG;ac4U)bc4)matc*ie4*je4*ke424c24s2'o )mato(o4(o4(o4(o4)w_o4<o;paco)<o4<o;rbo ;reo(<o0<o8;NMo=q*tmpr.+r*is4=t*stru.+v[>,D ?~*w4+4+4+4+4-.4Q33U13T 3Q~5=.4Q33U13T 5%o.5/\3-%.54\33U:-.4Q33U13T 5%.5/\35%%N.54\33U:4h33U3T~3R3X53Yv?*k4*x4*y4*u4+4+4?*op4*len4-Hd.a.X01j@u@~1 9g..X.aAgBjBuB~1 CgB..Ag1 4733T|3Q 3R73X 4733T|3Q 3RH3X -H.a.X01j@u@~1 9.X.aABjBuB~1 CB..A1 4733T|3Q 3R73X 4733T|3Q 3RH3X -<..01 4733T|3Q 3R73X -..01 4733T|3Q 3R73X D..01 4733T|3Q 3R73X -H.a.X01j@u@~1 9jN.X.aAjBjBuB~1 CjB..Aj1 4733Tv3Q 3R73X 4733T~3Q 3RH3X D..01 4733Tv1%v1%v!2%!v1%v1%v!2%!v!4%!v1%v1%v!2%!v1%v1%v!2%!v!4%!v!8%!v1%v1%v!2%!v1%v1%v!2%!v!4%!v1%v1%v!2%!v1%v1%v!2%!v!4%!v!8%!v!@%!v!#3Q 3R73X 2s33U3Q 3Rs3X2~33U233U43T 3Q3R /3$/. hD M4'7W)mat)q4)r4)w_4()pac)<4<Dž;rb;re< <(;NM043UU3TT3QQ3RT3XQ3YR'Ш&([+Ҩ+4*fpW,6 -A .\.Q433Us3TU-A5.\.Q5Ac.\.Q23{3U|233T 3Q3R 233Us3T /3233Us3T /34~33Us h6 M&'y!([*tmp+*bwty,! -A.\.Q433Uv3Ts-m) .6}433Uv-Am .\.Q433Uv3Ts-m .6}433Uv5!7 64!33T13Q 3R 2W!3UU236!3Us23m!3T13Q 3R3X 23!3Uv24!3Uv3T|2~3!3Uv4~33Us h! M!'"$"$([(4*idx"$+,8$ ?G#&i4&c4E" ".64!33T13Q 3R 24"3Uv23"#3T13Q 3R 3X 249#3T1/'4E#.64!33T13Q 3R 2W#3U}23#3U13T03Q 3R 3X 2~3 $3Uv4;3U} h8$ M($F"$$G[G4H!3UU3TTIX%%idx"$/~3/~3/~3J~3 %3UU/24/=4/~3J~3J%3UU/~3F,4'G,%mem,%idx,"$&k.&x.&i/4,' ,' E:22&...K7f&...E9&...4H43Tv|"3Qs23&3U `3T 3Q 23R 23.'3U03T 3Q 73R 23g'3Us3T 3Q 93R 23'3Uv"23'3Uv"4Q43U 3T 3Q ?3R  h' M ''FE4g,%idxE"$&iG4&kH&xH&tmpH&memI,, KN(...4\43Uv3Tv3Q}KO )...KP_)...4H43Us"3QKY)..6KZ)...4H43QsK\"*...4H43U~"K^r*...4H43T3QvK_*...4H43T3QvKg+...4H43U~s"3Qv273L+3Ts3Q 3R M3X 273+3Uv3T}3Q 3R P3X /~3/~3/3/3273,3U3Tv"3Q 3R X3X /~323*,3U23D,3U/~3/~3/~3273,3U~3T}3Q 3R f3X /~3/~3HX%3QU'Iri.%bnsr.Gr[&it4Lt4Mu,. 9(-&pw[4k43T E -.64!33T13Q 3R 3Xs2w4.3U 3T}Jw4;.3U 2w4Z.3U 2w4y.3U 443U:.] h. M.F_-1%s[&p&q&rL,-1 NK n/.( . . E/.64!33T13Q 3R E"0.64!33T13Q 3R E }07 64!33T13Q 3R 2k403Us3T 2~303Us2 303Us3T 3Q 3R 24 13Us4k43Us3T  F2%s[%hdr&len4,2 KA1.\.Q433U | $ &s"3Tv2313Us2323Uv273L23Us3Q 3R 3X /4 4 33T 3Q 3R .OtOtOtP4  a2 MP2 Qu RORSRURRTRWS RTR OSR UTV .64.bwtV.bwtSRTV.saR RYRZR IRFRUR\R KURETSQRNRP% $ > $ > : ; I I&I  : ;  : ; I8 : ;I8 : ; I !I/ &: ;I : ; : ;I8  : ;  : ; I8  : ;  : ; I8 : ; I8 I: ; (( .: ; 'I : ; I4: ; I4I4.: ; ' .?: ; 'I 4 : ; I!"7I#.?: ; 'I $.: ;'I@B%: ;I&4: ;I'.?: ; 'I@B(: ; I): ; I*4: ; I+4: ; I,4I4-1RUX Y .1/10 U141213B4151X Y 61718.?: ; '@B9 :4: ; I;: ; I<: ; I=4: ; I> : ; ? 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H HQH;SsHCH0HSHHH{7HALL$H D\$HHH HHH кHHH HHH HpHsH HCLL$D\$HQsH޿0OHH{AH%H HHH HHH кHHH HHH HpHsHHCHH޿=HH{HHADL$0H HHH HHH кHHH HHH HpHsHHCDL$0HJHH{jHALL$0H HHH HHH кHHH HHH HpHsH HCLL$0HqHھHD$(H+H@Nd LHLwH HcH{H9HrHHH9 H 9 u H{HƄ,-HnHH{jHALL$0H LT$HHH HHH кHHH HHH HpHsH HCLL$0LT$HqBƄ$-LfH޿0H HQH;SHCH0HSHFH޿0LT$LT$HH{7HAH HHH HHH HHH кHHH HpHsH HCHQoHH{7HAH HHH HHH HHH кHHH HpHsH HCHQHH{7HAH HHH HHH HHH кHHH HpHsH HCHQHH{HHAH HHH HHH HHH кHHH HpHsHHCHJHH{HHAH HHH HHH HHH кHHH HpHsHHCHJHH{7HAH HHH HHH HHH кHHH HpHsH HCHQHH{7HAH HHH HHH HHH кHHH HpHsH HCHQ-H HQH;SQHCH0HSHH HQH;SHCH0HSHHH{HALL$H HHH HHH HHH кHHH HpHsH HCHLL$HH{HALL$H HHH HHH HHH кHHH HpHsH HCHLL$LH{HAI LHL HHH HHH кHHH HpHsHHCHLH{HAI LHL HHH HHH кHHH HpHsHHCHD$@t$D$P1HH{jHAH HHH HHH HHH кHHH HpHsHHCHHJ>Ƅ,-HnH HQH;Ss}HCH0HSH8HH{7HAH HHH HHH HHH кHHH HpHsH HCHQHH{7HAH HHH HHH HHH кHHH HpHsH HCHQ%Ht$HDFHcNjDƒ6A)+HD$HƒwA)Hc$H|$HADDFHH{7HAH HHH HHH HHH кHHH HpHsH HCHQH޿*HH{7HAH HHH HHH HHH кHHH HpHsH HCHQQHH{jHAH HHH HHH HHH кHHH HpHsHHCHEƄ,-HE1@AUATUSH(F$uG@9F,^MF,A1A9:HI;HFH+fffgtH‹F+F-f(HH9HM‰*)*ʋW*.%^^\f(vff(*.fD)Y*Yf*Y^YYX,ًE0~:f\$l$*Y\$l$X,)Ã<fZML\YX,H([]A\A]@F0~!1-of.f-f.fl$t$*WxT$T$]AM^l$L$fDf7fl$t$*F8ff(fl$*A*f(L$^\f.YYX,if*YYX,Lf*AWAVAUATEUSHHdH%(HD$x1EH|$H4$LD$H$H$~1AIHHt f.H~HH9uHIEWHt$HH|$0Ht$0HD$8HT$@Ht$PHD$XAHT$`A_X1HD$@HIRHT$DH|$H=A]A^E1H|$@HD$hHD$`HD$pL|$`uHHIDAWHT$HH|$IHD$`J|( AZA[L9t$@vrid == rid*** Left ref: *** Left query: re >= 0*** Right ref: *** Right query: ACGTN* 0 0 ** 0 0* * NM:i: MD:Z: RG:Z: pa:f:%.3f XR:Z: SA:Z:MIDSHTGCAN** %d, [%d,%d) <=> [%ld,%ld) a.rid == ar->ridq->rid >= 0a->rid == b->rid && a->rb <= b->rb* potential hit merge between [%d,%d)<=>[%ld,%ld) and [%d,%d)<=>[%ld,%ld), @ %s; w=%d, r=%.4g * test potential hit merge with global alignment; w=%d * Found CHAIN(%d): n=%d; weight=%d* fraction of repetitive seeds: %.3f ** Seed(%d) [%ld;%ld,%ld] is almost contained in an existing alignment [%d,%d) <=> [%ld,%ld) ** Seed(%d) might lead to a different alignment even though it is contained. Extension will be performed. ** ---> Extending from seed(%d) [%ld;%ld,%ld] @ %s <--- *** Left extension: prev_score=%d; score=%d; bandwidth=%d; max_off_diagonal_dist=%d *** Right extension: prev_score=%d; score=%d; bandwidth=%d; max_off_diagonal_dist=%d *** Added alignment region: [%d,%d) <=> [%ld,%ld); score=%d; {left,right}_bandwidth={%d,%d} * ---> Processing chain(%d) <--- * %ld chains remain after removing duplicated chains =====> Processing read '%s' <===== =====> Processing read '%s'/1 <===== =====> Processing read '%s'/2 <===== * Band width: inferred=%d, cmd_opt=%d, alnreg=%d * Final alignment: w2=%d, global_sc=%d, local_sc=%d =====> Finalizing read '%s' <===== =====> Finalizing read pair '%s' <===== [M::%s] Processed %d reads in %.3f CPU sec, %.3f real sec mem_process_seqsmem_reg2alnmem_reg2alnmem_reg2sammem_reg2samkputckputsnkputwkputlks_resizemem_chain2alnmem_chain2alnmem_mark_primary_se_coremem_mark_primary_semem_patch_regks_introsort_mem_ars_hash2ks_mergesort_mem_ars_hash2ks_introsort_mem_ars_hashks_mergesort_mem_ars_hashks_introsort_mem_arsks_mergesort_mem_arsks_introsort_mem_ars2ks_mergesort_mem_ars2mem_chain_fltks_introsort_mem_fltks_mergesort_mem_flt__kb_split_chnkb_putp_chntest_and_mergemem_collect_intvsmem_aux_initmem_chainkb_init_chnks_introsort_mem_intvks_mergesort_mem_intvmem_opt_init??V-??]_L?C@??ffffff?N@Gz@>@Zd;_@@?̌?L= ;intB w w44 i 4 w    0  4    ( 0 8 @ H P X ` h 4p 4t ~x b i   ! ) * + , .I /4 1     4 5lImIs  0[ 3T 7B,V`. /hL20 1h0 2h8bwt3@ 5H74H8hPsa9XhKKh:s <@x=@ =hhP>!@n@Im@Ia@P@[() *len+ , gi-K . / / 02' 3len4amb5 608 9 : ;K < = > ?('@2@0 4id4    seq   sam (!a4b4 4 4 4 4 4 4 4 w4$ 4(  V0T"48 #4< $4@ %4D &4H 'L (4P )4T *4X +4\ ,4` -d .h /l 0p 1t 24x 34| 44 54 54mat67X9rb:re:qb;4qe;4rid<4 =4 >4 sub?4$ @4( A4, B40wC44 D48 E4< F4@ G4DH4HH4H IL JVPKMnMImMIaMM ON lowP4 P4 Q4avgR-stdR-S 8U posVridW4 X4 YKYKYKNMYK Z4 [XA\ ^4(sub^4, ^40_Y l 4te4qe4 4 te24tb4qb4 A B B C4Dw V@] mem^ ^ ^ 0 _ <  len 4 ( n4m4 4rid4 wKKK pos  < G  nImIa   '9 (n() Kd xLd iM49 ND ( d 4 4 4 4n4t4 4 4$v  nImIa Hi optj bwtk bnsl pacm pesn auxo ( p 0 q 8 r@    @ N   s) W5bnsW posWW4xkrtr4rr4end4mid4 9   bki4r4xd   !2F2F2K2I!9999I4opt c p4xy"!  <  !  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[%s] textLength=%ld, availableWord=%ld (void*)(relativeRank + bwtInc->buildSize + 1) <= (void*)bwtInc->packedText(void*)(relativeRank + bwtInc->buildSize + 1) <= (void*)mergedBwt(void*)relativeRank <= (void*)bwtInc->packedTextForwardDNAAllOccCountNoLimit(): DNA occ sum exception! relativeRank[numChar] == oldInverseSa0RelativeRankmergedBwt >= insertBwt + numCharmergedBwt >= bwtInc->workingMemory + mergedOccSizeInWordBWTIncConstructFromPacked() : Cannot open %s : %s BWTIncConstructFromPacked() : Can't seek on %s : %s BWTIncConstructFromPacked() : Can't ftell on %s : %s BWTIncConstructFromPacked() : Can't read from %s : %s [BWTIncConstructFromPacked] %lu iterations done. %lu characters processed. BWTSaveBwtCodeAndOcc(): Cannot open %s for writing: %s BWTSaveBwtCodeAndOcc(): Error writing to %s : %s BWTSaveBwtCodeAndOcc(): Error on closing %s : %s [bwt_gen] Finished constructing BWT in %u iterations. Usage: bwtgen bwt_gen.cUnexpected end of filerbwbBWTIncConstruct????BWTIncCreateBWTCreateb3 (4intpp0+i (08@ H P X c` ih ip  it wx T [ o  ! ) * + , .B /i 1 ccii2  +   p74 %%&BWTPIjJKLjMpNp Oj(Pp0Q8R@SH-BWTT`VbwtWX-YjZ[ \(]0^-8_p@`pHa$PbpXvMcwbwtw} v  -_i__-χl-   -' -C qz qjqqisw wpiy-jy-cy-ty- - 6 km kpkkim p  c- i!B  B__nBeV ee-f-t fi f"J JJ- -  p i j- k- c--- - - -  --  M - #[ $key $seq %&&&&&'{'}&i(i(j&&&)2j  *+,-ğ./021U 1T11QV021U1*2^#.34 5.534 2 @. . . 3 3% 3/ 39 6C 6O 3[ 3g 3s 3 3 3 3 4 ~7 8 2. 56 9 . 01U3)2:C?u%C%Cp(bwtE;  P53 3 4 T3 ?21U11TP1Q 1R G1X ?21U51T81Q 1R K1X ?291U s8%#8%2$1T81Q 1R Y1X 021U@<$1T41Q 1R R1X   u:a%a%a-%a-&c id-&d-;  O$bwt>%>%? %@%@&B&BDC-ED(cE- iF(jF&G&H&H(sumI&J&Jp     i j- c- t---M bwt  i r c-/bwt seq  - i c- t- j--dna @@ i-- j- c- sum- gg seqg h hii ik ck sl rlmmno - o#'%%(i-&-&j(seqj&j&p&p&&;' 8 . 53* 8  . 56 .2.&.53b3l3v333338m w$. . . .z 53 3 3 3 8}F%......5333(343>3J3V3b3n3z33?2u%1Us1Q~1R31X01Y0?<%1Us)?%1Us) ?2%1Us1T}1Q~1R~1X11Y1? &1U}1Tw) )2?2p&1U 1T 1Q 1R ?2&1U 1T 1Q *1R ?2&1U 1T 1Q )1R ?20'1U 1T 1Q l1R ?2p'1U 1T 1Q |1R 021U 1T 1Q G1R  '  ':4-%%%&&&&&'M&< (. . . . 021U1T11Q11R~8$ *).J .? .4 < ). . . . 021T11Q}1R~8)./021T1< $*. . . . 021T11Q}1R~<u*./021T11Q 1X|<*./8*./8*> /?2+1U1T ?2?+1U~1T 1Q2?3W+1U~?{+1Us1Tv1Q|?+1Uv?2+1U~1T s1Q1?2+1U~1Ts 1Q1?#+1Q|?,1Uv1T|?26,1U~1T1Q1)3)3?2g,1U1?2,1U~1T1Q1?#,1Qs?,1Uv1Ts?+3,1U~)3)3)3)3)2)3)3BB-$bwt)73)73)73)73)73F731UUB*.%)73)73F731UUB!B0$bwt!w%!%!&#%8V /..g 86../021T18)/./8;2/> /?2W/1U}1T ?C3/1Uv1T81Q11R|?C3/1T81Q41R|?C3/1T41Qs1R|?O3/1U|)3)3?2 01U1)3)3)3)3BAF@1%A%A%Ai&C8t E0. 0Z31U11T ?'11UU1T Q $ &1Q Q $ &?.211Tv1Q0G-2 1. . 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H Q *Vp Mu7 q   7 H,\79P Q w      P  &) r2 7k L 2U ~^ c     d  !   S     9  L  V  z  T T     R 4pH0P  .symtab.strtab.shstrtab.rela.text.data.bss.text.unlikely.rodata.str1.1.rodata.rela.debug_info.debug_abbrev.debug_loc.rela.debug_aranges.rela.debug_line.debug_str.comment.note.GNU-stack.rela.eh_frame @ @A8& , 1 @2 O \ W@CP hv70@`P0 7@P0;07=5l=p=H@P8Q> XA{bwtindex.o/ 0 0 0 644 55312 ` ELF>@@USHHdH%(HD$1HHHHH|$HٺHHD$HL$dH3 %(HDuH[]AVAUAATUISHA`HdH%(H$1HHHE0HHHHE81IHE0APHHHHLHILHE0HEHEAETHx1H}0Hþt4fHЉHADHHDH9U0wHEHELHE HEHE(HE Eu0HHHEH}8AzLM01HE@Mt&f4IЃIHɃB 4L9uHH$dH3%(HmH[]A\A]A^þ@Lu01IIx@F,3E1LAUHpIcAItAuIIuHuLHE1f.HHtuHxLDL9sƒx,HH~J+I̓J +fHH9uÉu(OHH4?H LmLOH@HLT7Lf.H~H?H L9uHI|XATAUSHE1duXHމyHcP9~GH Usage: bwa bwtupdate Usage: bwa bwt2sa [-i %d] [bwa_index] Construct BWT for the packed sequence... [bwa_index] %.2f seconds elapse. [bwa_index] Pack forward-only FASTA... [bwa_index] Construct SA from BWT and Occ... 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