QObject Loading OPENCL driver library Loading OPENCL driver library Cannot load OpenCL library. Error while loading %1 Cannot load OpenCL library. Error while loading %1 Cannot resolve symbol %1 Cannot resolve symbol %1 Cannot load library: %1 Cannot load library: %1 Some errors occurs in library: %1 Some errors occurs in library: %1 Gaps: Gaps: clear OpenCL resources clear OpenCL resources GPU memory usage: %1 Mb GPU memory usage: %1 Mb Device's preferred work group size multiple is %1 Device's preferred work group size multiple is %1 OPENCL: BUILD LOG ******************** %1 ******************** OPENCL: BUILD LOG ******************** %1 ******************** OPENCL: Program::build() failed. (%1) OPENCL: Program::build() failed. (%1) U2::AlignInAminoFormTask Align in amino form Align in amino form Invalid MSA object detected Invalid MSA object detected AlignInAminoFormTask: Input alphabet is not nucleic! AlignInAminoFormTask: Input alphabet is not nucleic! AlignInAminoFormTask: Input alignment is empty! AlignInAminoFormTask: Input alignment is empty! Invalid applications settings detected Invalid applications settings detected Invalid users applications settings detected Invalid users applications settings detected Invalid MSA document detected Invalid MSA document detected NULL clonedObj in AlignInAminoFormTask::prepare! NULL clonedObj in AlignInAminoFormTask::prepare! Can not find row %1 in original alignment. Can not find row %1 in original alignment. U2::AssemblyConsensusAlgorithmFactoryDefault Default Default Returns simply the most frequent base and 'N' are no reads intersecting this position Returns simply the most frequent base and 'N' are no reads intersecting this position U2::AssemblyConsensusAlgorithmFactorySamtools SAMtools SAMtools Uses SAMtools to calculate consensus with regard to quality of reads Uses SAMtools to calculate consensus with regard to quality of reads Fetching reads from database and converting to SAMtools format Fetching reads from database and converting to SAMtools format Sorting reads Sorting reads Calculating consensus Calculating consensus U2::BestPositionFindTask Best position find task Best position find task U2::CreateSubalignmentTask Create sub-alignment: %1 Create sub-alignment: %1 Document is locked: %1 Document is locked: %1 U2::DnaAssemblyMultiTask The short reads can't be mapped to the reference sequence! The short reads can't be mapped to the reference sequence! U2::DnaAssemblyToReferenceTask Align short reads Align short reads U2::FindAlgorithmTask Find in sequence task U2::GenomeAssemblyMultiTask Assembly cannot be performed. Assembly cannot be performed. U2::LoadPatternsFileTask Load pattern from file Load pattern from file Detecting format error for file %1 Detecting format error for file %1 U2::MSAConsensusAlgorithmFactoryClustal Emulates ClustalW program and file format behavior. Emulates ClustalW program and file format behavior. ClustalW U2::MSAConsensusAlgorithmFactoryDefault Based on JalView algorithm. Returns '+' if there are 2 characters with high frequency. Returns symbol in lower case if the symbol content in a row is lower than the threshold specified. Default U2::MSAConsensusAlgorithmFactoryLevitsky The algorithm proposed by Victor Levitsky to work with DNA alignments. Collects global alignment frequency for every symbol using extended (15 symbols) DNA alphabet first. For every column selects the most rare symbol in the whole alignment with percentage in the column greater or equals to the threshold value. Levitsky U2::MSAConsensusAlgorithmFactoryStrict The algorithm returns gap character ('-') if symbol frequency in a column is lower than threshold specified. Strict U2::MSADistanceAlgorithm MSA distance algorithm "%1" task MSA distance algorithm "%1" task U2::MSADistanceAlgorithmFactoryHamming Based on Hamming distance between two sequences Based on Hamming distance between two sequences Hamming dissimilarity Hamming dissimilarity U2::MSADistanceAlgorithmFactoryHammingRevCompl Based on Hamming distance between two sequences Based on Hamming distance between two sequences Hamming reverse-complement Hamming reverse-complement U2::MSADistanceAlgorithmFactorySimilarity Based on similarity distance between two sequences Based on similarity distance between two sequences Simple identity Simple identity U2::MSADistanceAlgorithmHammingRevCompl An unexpected error has occurred during running the Hamming reverse-complement algorithm. An unexpected error has occurred during running the Hamming reverse-complement algorithm. U2::MaConsensusAlgorithmFactorySimpleExtended The algorithm selects the best character from the extended DNA alphabet. Only bases with frequences which are greater than a threshold value are taken into account. Simple extended U2::MolecularSurfaceCalcTask Molecular surface calculation U2::MsaColorSchemeFactory Nucleotide Nucleotide Amino Amino U2::MsaColorSchemeRegistry No colors No colors UGENE Sanger Jalview Jalview Percentage Identity Percentage Identity Percentage Identity (gray) Percentage Identity (gray) Zappo Zappo Tailor Tailor Hydrophobicity Hydrophobicity Helix propensity Helix propensity Strand propensity Strand propensity Turn propensity Turn propensity Buried index Buried index Clustal X Clustal X U2::MsaHighlightingSchemeFactory Nucleotide Nucleotide Amino Amino U2::MsaHighlightingSchemeRegistry No highlighting No highlighting Agreements Agreements Disagreements Disagreements Gaps Gaps Conservation level Conservation level Transitions Transitions Transversions Transversions U2::ORFFindTask ORF find U2::PWMConversionAlgorithmFactoryBVH Berg and von Hippel weight function U2::PWMConversionAlgorithmFactoryLOD log-odds log-odds log-odds weight function log-odds weight function U2::PWMConversionAlgorithmFactoryMCH Match Match Match weight function Match weight function U2::PWMConversionAlgorithmFactoryNLG NLG NLG NLG weight function NLG weight function U2::PairwiseAlignmentTask Pairwise alignment task Pairwise alignment task U2::PhyTreeGeneratorLauncherTask Calculating Phylogenetic Tree Calculating Phylogenetic Tree Tree construction algorithm %1 not found Tree construction algorithm %1 not found U2::PhyTreeGeneratorTask Calculating Phylogenetic Tree Calculating Phylogenetic Tree U2::SecStructPredictTask Secondary structure predict U2::SequenceContentFilterTask Sequence content Sequence content U2::SimpleAddToAlignmentTask Align sequences to an existing alignment by UGENE started Align sequences to an existing alignment by UGENE started U2::SmithWatermanReportCallbackAnnotImpl Annotation object not found. Annotation object not found. Annotation table is read-only Annotation table is read-only U2::SmithWatermanReportCallbackMAImpl SmithWatermanReportCallback failed to create new MA document SmithWatermanReportCallback failed to create new MA document Failed to add a reference subsequence row. Failed to add a reference subsequence row. Failed to add a pattern subsequence row. Failed to add a pattern subsequence row. Failed to create an alignment. Failed to create an alignment. Smith-Waterman pairwise alignment: no results Smith-Waterman pairwise alignment: no results Sequences aren't stored in the source msa dbi Sequences aren't stored in the source msa dbi SmithWatermanReportCallback failed to create new MA document. SmithWatermanReportCallback failed to create new MA document. Failed to get the sequence object. Failed to get the sequence object. Failed to get the sequence data. Failed to get the sequence data. Failed to add row to result msa. Failed to add row to result msa. Failed to get msa from dbi Failed to get msa from dbi Failed to update row gap model Failed to update row gap model U2::SplicedAlignmentTask SplicedAlignmentTask SplicedAlignmentTask U2::SubstMatrixRegistry Reading substitution matrix from %1 Reading substitution matrix from %1 Error weight matrix file '%1' : %2 Error weight matrix file '%1' : %2 Error opening file for read: %1 Error opening file for read: %1 Error reading file: %1 Error reading file: %1 Invalid character token '%1' , line %2 Invalid character token '%1' , line %2 Duplicate character '%1' , line %2 Alphabet is neither nucleic nor protein! Matrix doesn't contains score for default alphabet character '%1' Matrix doesn't contains score for default alphabet character '%1' Invalid character row '%1' , line %2 Invalid character row '%1' , line %2 Duplicate character mapping '%1' , line %2 Duplicate character mapping '%1' , line %2 Invalid number of columns '%1' , line %2 Invalid number of columns '%1' , line %2 Can't parse numeric value '%1', line %2 Unexpected end of file! Unexpected end of file! U2::TranslateMsa2AminoTask Translate nucleic alignment to amino Translate nucleic alignment to amino Invalid MSA object detected Invalid MSA object detected Multiple alignment already has amino-acid alphabet Multiple alignment already has amino-acid alphabet Unable to find suitable translation for %1 Unable to find suitable translation for %1 Invalid translation object Invalid translation object