BaseContentDialog Set Base Content Set Base Content Base conetnt Base conetnt Base content Base content A A % % C C G G T T GC Skew GC Skew CSVColumnConfigurationDialog Column role Column role Annotation start position Annotation start position Add offset Add offset bp bp Annotation end position Annotation end position Inclusive Inclusive Annotation length Annotation length Complement strand mark Complement strand mark Mark value Mark value Annotation name Annotation name Qualifier Qualifier Ignore this column Ignore this column Select the Role of the Column Select the Role of the Column Annotation group Annotation group DNASequenceGeneratorDialog Generate Sequence Generate Sequence Parameters Parameters Length Length bp bp Window size Window size Number of sequences Number of sequences Initialize random generator manually Initialize random generator manually Content Content Reference Reference ... ... Base content (%) A A C C G G T T GC Skew GC Skew Manual Manual Configure... Configure... Output Output Output File Output File Format Format Add to project Add to project ExportBlastResultDialog Export BLAST Result to Multiple Alignment Export BLAST Result to Multiple Alignment Export to file Export to file ... ... File format to use File format to use Qualifier to use as name Qualifier to use as name Add reference to alignment Add reference to alignment Add document to the project Add document to the project ExportChromatogramDialog Export Chromatogram File Export Chromatogram File Export to file Export to file ... ... File format to use File format to use Reversed Reversed Complemented Complemented Add document to the project Add document to the project ExportMca2MsaDialog Export Alignment without Chromatograms Export Alignment without Chromatograms File format File format ... ... Export to file Export to file Add document to project Add document to project Include reference sequence Include reference sequence ExportMsa2McaDialog ... ... ImportAnnotationsFromCSVDialog File to read File to read ... ... Results Results Result file Result file File format File format Add result file to project Add result file to project Column separator Column separator File parsing File parsing , , Guess Guess Script Script Edit Edit First lines to skip First lines to skip Do not skip Do not skip line(s) line(s) Skip all lines starts with the text Skip all lines starts with the text # # Remove quotes Remove quotes Default annotation name Default annotation name misc_feature misc_feature Interpret multiple separators like a single separator (try when separator is a whitespace character) Interpret multiple separators like a single separator (try when separator is a whitespace character) Import Annotations from CSV Import Annotations from CSV Results preview Results preview Preview Preview Raw file preview: Raw file preview: U2::ADVExportContext Export selected sequence region... Export selected sequence region... Export sequence of selected annotations... Export sequence of selected annotations... Align selected annotations... Align selected annotations... Align selected annotations (amino acids)... Align selected annotations (amino acids)... Align selected sequence regions... Align selected sequence regions... Align selected sequence regions (amino acids)... Align selected sequence regions (amino acids)... Export sequences by 'id' Export sequences by 'id' Export sequences by 'accession' Export sequences by 'accession' Export sequences by 'db_xref' Export sequences by 'db_xref' from ' from ' Fetch sequences from remote database Fetch sequences from remote database Fetch sequences by 'id' %1 Fetch sequences by 'id' %1 Fetch sequences by 'accession' %1 Fetch sequences by 'accession' %1 Fetch sequences by 'db_xref' %1 Fetch sequences by 'db_xref' %1 Illegal parameter: input alignment is not empty! Illegal parameter: input alignment is not empty! %1 is not a BLAST annotation %1 is not a BLAST annotation Can not export BLAST annotations from different sequences Can not export BLAST annotations from different sequences Can not find qualifier to set as a name for BLAST sequence Can not find qualifier to set as a name for BLAST sequence Illegal parameter: Input alignment is not empty! Illegal parameter: Input alignment is not empty! Create alignment Create alignment Save alignment to file Save alignment to file No annotations selected! No annotations selected! Export annotations... Export annotations... Export BLAST result to alignment Export BLAST result to alignment No sequence regions selected! No sequence regions selected! At least 2 annotations are required At least 2 annotations are required Different sequence alphabets Different sequence alphabets At least 2 sequences required At least 2 sequences required No sequence object found No sequence object found Alignment is too large Alignment is too large Can't derive alignment alphabet Can't derive alignment alphabet U2::AddExportedDocumentAndOpenViewTask Document is already added to the project %1 Document is already added to the project %1 Can't create load task U2::BaseContentDialog Save Save Cancel Cancel Base content Base content Incorrect GC Skew value Incorrect GC Skew value Total percentage has to be 100 % Total percentage has to be 100 % U2::CSVColumnConfigurationDialog OK Cancel Cancel Invalid qualifier name! Invalid qualifier name! U2::ConvertMca2MsaTask Convert MCA to MSA task Convert MCA to MSA task U2::CreateExportItemsFromSeqRegionsTask Invalid sequence object detected Invalid sequence object detected Extract sequences from regions task Extract sequences from regions task Invalid annotation table detected Invalid annotation table detected U2::DNAExportPlugin DNA export DNA export Export and import support for DNA & protein sequences Export and import support for DNA & protein sequences Random sequence generator... Random sequence generator... U2::DNAExportService DNA export service DNA export service Export and import support for DNA & protein sequences Export and import support for DNA & protein sequences U2::DNASequenceGeneratorDialog Generate Generate Cancel Cancel Save sequences Save sequences Open file Open file DNA Sequence Generator DNA Sequence Generator Windows size bigger than sequence length Windows size bigger than sequence length Reference url is not specified. Reference url is not specified. Output file is no specified. Output file is no specified. Base content Base content Total percentage must be 100% Incorrect GC Skew value Incorrect GC Skew value U2::DNASequenceGeneratorTask Reference for sequence generator has to be a sequence or an alignment Reference for sequence generator has to be a sequence or an alignment Generate sequence task Generate sequence task Incorrect reference file Incorrect reference file Generated MSA Generated MSA U2::EvaluateBaseContentTask Evaluate base content task Evaluate base content task Base content can be evaluated for sequence or sequence alignment Base content can be evaluated for sequence or sequence alignment U2::ExportAlignmentTask Export alignment to '%1' Export alignment to '%1' U2::ExportAnnotationSequenceSubTask Extract annotation regions Extract annotation regions Sequences of the selected annotations can't be exported. At least one of the annotations is out of boundaries Sequences of the selected annotations can't be exported. At least one of the annotations is out of boundaries Exported sequence has been deleted unexpectedly Exported sequence has been deleted unexpectedly U2::ExportAnnotationSequenceTask Export annotations Export annotations U2::ExportBlastResultDialog Export Export Cancel Cancel File name is empty! File name is empty! U2::ExportChromatogramDialog Export Export Cancel Cancel Select a file Select a file File name is empty! File name is empty! U2::ExportDNAChromatogramTask Export chromatogram to SCF Export chromatogram to SCF U2::ExportMSA2MSADialog Export Nucleic Alignment to Amino Translation Export Nucleic Alignment to Amino Translation Export to file Export to file ... ... File format to use File format to use Amino translation Amino translation Add document to the project Add document to the project Export range Export range Whole alignment Whole alignment Selected rows Selected rows Export Export Cancel Cancel Export alignment Export alignment File is empty File is empty U2::ExportMSA2MSATask Export alignment to alignment: %1 Export alignment to alignment: %1 Nothing to export: multiple alignment is empty Nothing to export: multiple alignment is empty Out of memory Out of memory U2::ExportMSA2SequencesDialog Convert Alignment to Separate Sequences Convert Alignment to Separate Sequences Export to file Export to file ... ... File format to use File format to use Add document to the project Add document to the project Gap characters ('-') Gap characters ('-') Keep Keep Trim Trim Export Export Cancel Cancel File name is empty! File name is empty! U2::ExportMSA2SequencesTask Export alignment to sequence: %1 Export alignment to sequence: %1 U2::ExportMca2MsaDialog Export Export Cancel Cancel Export Alignment Export Alignment U2::ExportMca2MsaTask Export Sanger reads task Export Sanger reads task U2::ExportProjectViewItemsContoller Export sequences... Export sequences... Export corresponding sequence... Export corresponding sequence... Export sequences as alignment... Export sequences as alignment... Export alignment to sequence format... Export alignment to sequence format... Export alignment without chromatograms... Export alignment without chromatograms... Export nucleic alignment to amino translation... Export nucleic alignment to amino translation... Import annotations from CSV file... Import annotations from CSV file... Export chromatogram to SCF... Export chromatogram to SCF... Export annotations... Export annotations... Export sequence quality... Export sequence quality... Export object... Export object... Export/Import Export/Import There are no sequence objects selected. There are no sequence objects selected. There is no annotation table selected. There is no annotation table selected. There is no associated sequence found. There is no associated sequence found. No sequence objects selected! No sequence objects selected! Not enough memory Not enough memory Select one alignment object to export Select one chromatogram alignment object to export Select one chromatogram object to export Select one chromatogram object to export Select one annotation object to export Select one annotation object to export Set output quality file Set output quality file U2::ExportSelectedSeqRegionsTask Export selected regions from a sequence task Export selected regions from a sequence task Invalid annotation table detected Invalid annotation table detected U2::ExportSequenceTask Export sequence to '%1' Export sequence to '%1' Complement translation not found Complement translation not found Amino translation not found Amino translation not found The "%1" translation is empty due to small source sequence length The "%1" translation is empty due to small source sequence length No sequences have been produced. No sequences have been produced. Back-translation not found Back-translation not found U2::ExportSequences2MSADialog Export Sequences as Alignment Export Sequences as Alignment Export to file Export to file ... ... File format to use File format to use Add document to the project Add document to the project Use Genbank "SOURCE" tags as a name of sequences (for Genbank sequences only) Use Genbank "SOURCE" tags as a name of sequences (for Genbank sequences only) Export Export Cancel Cancel File name is empty! File name is empty! U2::ExportSequencesDialog Export Selected Sequences Export Selected Sequences Export to file Export to file ... ... File format to use File format to use Export with annotations Export with annotations Add document to the project Add document to the project Use custom sequence name Use custom sequence name Convertion options Convertion options Save direct strand Save direct strand Save complement strand Save complement strand Save both strands Save both strands Translate to amino alphabet Save both strands Save all amino frames Save all amino frames Back translation options Back translation options Translate back to nucleic alphabet Translate back to nucleic alphabet Most frequently used codons Most frequently used codons Organism: Organism: Save as separate sequences Save as separate sequences Frequency distribution Frequency distribution Use custom translation table Use custom translation table Merge options Merge options Add gap symbols between sequences Add gap symbols between sequences Merge sequences Merge sequences Export Export Cancel Cancel Export Sequences Export Sequences Select organism Select organism File is empty File is empty File name is too long! Organism for back translation not specified Organism for back translation not specified U2::ExportUtils A problem occurred during export MCA to MSA. The MCA is no more available. U2::GTest Unable to create temporary file Unable to create temporary file Invalid translation table num: %1 Invalid translation table num: %1 Invalid base : %1 Invalid base : %1 context not found %1 context not found %1 container of object with type "%1" is empty container of object with type "%1" is empty context not found %1 context not found %1 container of object with type "%1" is empty container of object with type "%1" is empty context not found %1 context not found %1 container of object with type "%1" is empty container of object with type "%1" is empty Unexpected alignment length %1, expected %2 Unexpected alignment length %1, expected %2 Unexpected alignment size %1, expected %2 Unexpected alignment size %1, expected %2 Invalid name for row %1: %2, expected %3 Invalid name for row %1: %2, expected %3 Invalid char at row %1 column %2: %3, expected %4 Invalid char at row %1 column %2: %3, expected %4 U2::GenerateDNASequenceTask Generate DNA sequence task Generate DNA sequence task U2::GetSequenceByIdDialog OK Cancel Cancel Select folder to save Select folder to save Folder doesn't exist. Do you want to create it? Folder doesn't exist. Do you want to create it? U2::ImportAnnotationsFromCSVDialog Save imported annotations to Save imported annotations to //The script parses input line // and returns an array of parsed elements as the result var %1; //input line var %2; //parsed line number //The script parses input line // and returns an array of parsed elements as the result var %1; //input line var %2; //parsed line number Invalid start position/end position/length configuration! Invalid start position/end position/length configuration! Multiple columns are used as a name! Multiple columns are used as a name! Column separator value: [%1], hex: [%2], length: %3 Column separator value: [%1], hex: [%2], length: %3 Script is empty Script is empty Output file format is not set! Output file format is not set! Output file name is not set! Output file name is not set! Run Run Cancel Cancel Invalid default annotation name! Failed to guess separator sequence! Column separator CSV Files CSV Files Select CSV file to read Select CSV file to read Enter input CSV file name Enter input CSV file name Separator value is not set Separator value is not set [ignored] [ignored] [qualifier %1] [qualifier %1] [name] [name] [start position with offset %1] [start position with offset %1] [start position] [start position] [end position (inclusive)] [end position (inclusive)] [end position] [end position] [length] [length] [complement] [complement] [complement if '%1'] [complement if '%1'] [group] [group] U2::ImportAnnotationsFromCSVTask Import annotations from CSV Import annotations from CSV Annotations can't be added to the document %1 Annotations can't be added to the document %1 Document is locked and can't be modified %1 Document is locked and can't be modified %1 U2::LocalWorkflow::ExportPhredQualityPrompter from <u>%1</u> from <u>%1</u> unset unset Export PHRED quality scores%1 to %2. Export PHRED quality scores%1 to %2. U2::LocalWorkflow::ExportPhredQualityWorker DNA sequences DNA sequences The PHRED scores from these sequences will be exported The PHRED scores from these sequences will be exported PHRED output PHRED output Path to file with PHRED quality scores. Path to file with PHRED quality scores. Export PHRED Qualities Export PHRED Qualities Export corresponding PHRED quality scores from input sequences. Export corresponding PHRED quality scores from input sequences. U2::LocalWorkflow::GenerateDNAPrompter Generates random DNA sequence(s). Generates random DNA sequence(s). U2::LocalWorkflow::GenerateDNAWorker Sequences Sequences Generated sequences Generated sequences Length Length Length of the resulted sequence(s). Length of the resulted sequence(s). Count Count Number of sequences to generate. Number of sequences to generate. Content Content Specifies if the nucleotide content of generated sequence(s) will be taken from reference or specified manually (A, G, C, T parameters). Specifies if the nucleotide content of generated sequence(s) will be taken from reference or specified manually (A, G, C, T parameters). Reference Reference Path to the reference file (could be a sequence or an alignment). Path to the reference file (could be a sequence or an alignment). A A Adenine content. Adenine content. C C Cytosine content. Cytosine content. G G Guanine content. Guanine content. T T Thymine content. Thymine content. Algorithm Algorithm Algorithm for generating. Algorithm for generating. Window size Window size Size of window where set content. Size of window where set content. GC Skew GC Skew GC Skew. GC Skew. Seed Seed Value to initialize the random generator. By default (seed = -1) the generator is initialized with the system time. Value to initialize the random generator. By default (seed = -1) the generator is initialized with the system time. Generate DNA Generate DNA Generates random DNA sequences with given nucleotide content that can be specified manually or evaluated from the reference file. Generates random DNA sequences with given nucleotide content that can be specified manually or evaluated from the reference file. Unexpected value of 'content' parameter Unexpected value of 'content' parameter Reference url is not set. Reference url is not set. Base content must be between 0 and 100 Base content must be between 0 and 100 Total content percentage is more than 100 Total content percentage is more than 100 U2::LocalWorkflow::ImportPhredQualityPrompter from <u>%1</u> from <u>%1</u> unset unset Import PHRED quality scores in file %1 to the sequences %2 and send the sequences to the output. Import PHRED quality scores in file %1 to the sequences %2 and send the sequences to the output. U2::LocalWorkflow::ImportPhredQualityWorker DNA sequences DNA sequences The PHRED scores will be imported to these sequences The PHRED scores will be imported to these sequences DNA sequences with imported qualities DNA sequences with imported qualities These sequences have quality scores. These sequences have quality scores. PHRED input PHRED input Path to file with PHRED quality scores. Path to file with PHRED quality scores. Quality type Quality type Choose method to encode quality scores. Choose method to encode quality scores. File format File format Quality values can be in specialized FASTA-like PHRED qual format or encoded similar as in FASTQ files. Quality values can be in specialized FASTA-like PHRED qual format or encoded similar as in FASTQ files. Import PHRED Qualities Import PHRED Qualities Add corresponding PHRED quality scores to the sequences. You can use this worker to convert .fasta and .qual pair to fastq format. Add corresponding PHRED quality scores to the sequences. You can use this worker to convert .fasta and .qual pair to fastq format. Import of qualities is finished. Import of qualities is finished. U2::MSAExportContext Amino translation... Amino translation... Export Amino Translation Export Amino Translation U2::McaEditorContext Export alignment without chromatograms... Export alignment without chromatograms... U2::ReadCSVAsAnnotationsTask Parse CSV file %1 Parse CSV file %1 Invalid annotation name: '%1' Invalid annotation name: '%1' Start offset is not numeric: '%1' Start offset is not numeric: '%1' End offset is not numeric: '%1' End offset is not numeric: '%1' Length is not numeric: '%1' Length is not numeric: '%1' Invalid location: start: %1 len: %2, in line :%3, ignoring Invalid location: start: %1 len: %2, in line :%3, ignoring Can't parse line: '%1', error = %2, ignoring Can't parse line: '%1', error = %2, ignoring Script result is not an array of strings! Script result is not an array of strings! U2::ReadQualityScoresTask Failed parse quality value: file %1, line %2 Failed parse quality value: file %1, line %2 Failed to open quality file %1 Failed to open quality file %1 Failed to read data from quality file %1, probably it is empty. %2 Failed to read data from quality file %1, probably it is empty. %2 File %1 is not a quality file File %1 is not a quality file getSequenceByIdDialog The sequences from selected BLAST results will be downloaded from NCBI Genbank by their GI identifier The sequences from selected BLAST results will be downloaded from NCBI Genbank by their GI identifie Get Sequences by ID Get Sequences by ID The sequences from selected BLAST results will be downloaded from NCBI Genbank by their GI identifier The sequences from selected BLAST results will be downloaded from NCBI Genbank by their GI identifier Save to directory: Save to folder: Save to folder: ... ... Add to project Add to project