ORFDialogBase ORF Marker ORF Marker Strand Strand Both Both Search in both strands Search in both strands Direct Direct Search frames in direct strand only Search frames in direct strand only Complement Complement Search frames in complement strand only Search frames in complement strand only Search Settings Search Settings Min length, bp: Min length, bp: Ignore ORFs shorter than the specified length. Ignore ORFs shorter than the specified length. Must terminate within region Must terminate within region Must start with init codon Must start with init codon Allow overlaps Allow overlaps Allow alternative init codons Allow alternative init codons Include stop codon Include stop codon Preview Preview Clear results Clear results Region Region Length Length Start searching ORFs Start searching ORFs Allow alternative (downstream) initiators, when another start codon is located within a longer ORF. Then all possible ORF will be found, not only the longest ones. Allow alternative (downstream) initiators, when another start codon is located within a longer ORF. Then all possible ORF will be found, not only the longest ones. <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd"> <html><head><meta name="qrichtext" content="1" /><style type="text/css"> p, li { white-space: pre-wrap; } </style></head><body style=" font-family:'MS Shell Dlg 2'; font-size:8.25pt; font-weight:400; font-style:normal;"> Include stop codon into resulting annotation. </body></html> <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd"> <html><head><meta name="qrichtext" content="1" /><style type="text/css"> p, li { white-space: pre-wrap; } </style></head><body style=" font-family:'MS Shell Dlg 2'; font-size:8.25pt; font-weight:400; font-style:normal;"> Include stop codon into resulting annotation. </body></html> Allow ORFs starting with alternative initiation codons, accordingly to the current translation table. Allow ORFs starting with alternative initiation codons, accordingly to the current translation table. Ignore boundary ORFs which last beyond the search region(i.e. have no stop codon within the range). Ignore boundary ORFs which last beyond the search region(i.e. have no stop codon within the range). Allow ORFs starting with alternative initiation codons, accordingly to the current translation table. Allow ORFs starting with alternative initiation codons, accordingly to the current translation table. Require stop codon Require stop codon Ignore boundary ORFs which last beyond the search region (i.e. have no stop codon within the range). Ignore boundary ORFs which last beyond the search region (i.e. have no stop codon within the range). Find Open Reading Frames in sequence Find Open Reading Frames in sequence Settings Settings Ignore ORFs shorter than the specified length Ignore ORFs shorter than the specified length Specifies that each ORF found must start with the start codon Specifies that each ORF found must start with the start codon Max result Max result Output Output U2::FindORFsToAnnotationsTask Find ORFs and save to annotations Find ORFs and save to annotations Annotation table object is NULL! Annotation table object is NULL! U2::LocalWorkflow::ORFPrompter unset unset from %1 from %1 starting with any codon starting with any codon , allow ORFs %1 other than terminator , allow ORFs %1 other than terminator , take into account %1 , take into account %1 ignore non-terminated ignore non-terminated , %1 ORFs , %1 ORFs For each nucleotide sequence%1, find ORFs in %2 using the %3. Detect only ORFs not shorter than %4 bps%5. Output the list of found regions annotated as %6. For each nucleotide sequence%1, find ORFs in %2 using the %3. Detect only ORFs not shorter than %4 bps%5. Output the list of found regions annotated as %6. alternative start codons alternative start codons U2::LocalWorkflow::ORFWorker Input sequences Input sequences A nucleotide sequence to search ORFs in. Protein sequences are skipped. A nucleotide sequence to search ORFs in. Protein sequences are skipped. ORF annotations ORF annotations A set of annotations marking ORFs found in the sequence. A set of annotations marking ORFs found in the sequence. Annotate as Annotate as Name of the result annotations marking found ORFs. Name of the result annotations marking found ORFs. Genetic code Genetic code Which genetic code should be used for translating the input nucleotide sequence. Which genetic code should be used for translating the input nucleotide sequence. Require stop codon Require stop codon Require init codon Require init codon Allow alternative codons Allow alternative codons The result annotation will includes stop codon if this option is set. The result annotation will includes stop codon if this option is set. Finds Open Reading Frames (ORFs) in each supplied nucleotide sequence, stores found regions as annotations.Protein sequences are skipped if any supplied to input.<dfn>ORFs are DNA sequence regions that could potentially encode a protein, and usually give a good indication of the presence of a gene in the surrounding sequence.</dfn>In the sequence, ORFs are located between a start-code sequence (initiation codon) and a stop-code sequence (termination codon), defined by the selected genetic code. Finds Open Reading Frames (ORFs) in each supplied nucleotide sequence, stores found regions as annotations.Protein sequences are skipped if any supplied to input.<dfn>ORFs are DNA sequence regions that could potentially encode a protein, and usually give a good indication of the presence of a gene in the surrounding sequence.</dfn>In the sequence, ORFs are located between a start-code sequence (initiation codon) and a stop-code sequence (termination codon), defined by the selected genetic code. both strands both strands direct strand direct strand complement strand complement strand ORF: result name is empty, default name used ORF: result name is empty, default name used ORF: Incorrect value: min-length must be greater then zero ORF: Incorrect value: min-length must be greater then zero Incorrect value: min-length must be greater then zero Incorrect value: min-length must be greater then zero Bad sequence supplied to ORFWorker: %1 Bad sequence supplied to ORFWorker: %1 Found %1 ORFs Found %1 ORFs Min length, bp: Min length, bp: Include stop codon Include stop codon ORF Marker ORF Marker Max result Max result Find results not achieved by specified count. Find results not achieved by specified count. Limit results Limit results The amount of results will be limited id that option is setted. The amount of results will be limited id that option is setted. U2::ORFAutoAnnotationsUpdater ORFs ORFs U2::ORFDialog %1 results found. %1 results found. Complement Complement Direct Direct Start codons Start codons Alternative start codons Alternative start codons Stop codons Stop codons Results list contains results from the previous search. Clear? Results list contains results from the previous search. Clear? Progress %1% Progress %1% Error Error Cannot create an annotation object. Please check settings Cannot create an annotation object. Please check settings Sequence object is NULL Sequence object is NULL OK Cancel U2::ORFMarkerPlugin ORF Marker ORF Marker Searches for open reading frames (ORF) in a DNA sequence. Searches for open reading frames (ORF) in a DNA sequence. U2::ORFViewContext Find ORFs... Find ORFs... U2::QDORFActor both strands both strands direct strand direct strand complement strand complement strand , allow ORFs starting with any codon other than terminator , allow ORFs starting with any codon other than terminator , take into account alternative start codons , take into account alternative start codons , ignore non-terminated ORFs , ignore non-terminated ORFs Finds ORFs in %1 using the %2. Detects only ORFs not shorter than %3, not longer than %4%5. Finds ORFs in %1 using the %2. Detects only ORFs not shorter than %3, not longer than %4%5. Bad sequence Bad sequence ORF find ORF find Finds Open Reading Frames (ORFs) in supplied nucleotide sequence, stores found regions as annotations.Protein sequences are skipped if any.<dfn>ORFs are DNA sequence regions that could potentially encode a protein, and usually give a good indication of the presence of a gene in the surrounding sequence.</dfn>In the sequence, ORFs are located between a start-code sequence (initiation codon) and a stop-code sequence (termination codon), defined by the selected genetic code. Finds Open Reading Frames (ORFs) in supplied nucleotide sequence, stores found regions as annotations.Protein sequences are skipped if any.<dfn>ORFs are DNA sequence regions that could potentially encode a protein, and usually give a good indication of the presence of a gene in the surrounding sequence.</dfn>In the sequence, ORFs are located between a start-code sequence (initiation codon) and a stop-code sequence (termination codon), defined by the selected genetic code. Max length Max length Maximum length of annotation allowed. Maximum length of annotation allowed. ORF ORF Genetic code Genetic code Min length, bp: Min length, bp: Require init codon Require init codon Allow alternative codons Allow alternative codons Which genetic code should be used for translating the input nucleotide sequence. Which genetic code should be used for translating the input nucleotide sequence. Require stop codon Require stop codon Require stop codon. Require stop codon. Max result Max result Find results not achieved by specified count. Find results not achieved by specified count. Limit results Limit results The amount of results will be limited id that option is setted The amount of results will be limited id that option is setted