FindRepeatsDialog Find Repeats Find Repeats bp bp Heuristic based selection of repeat length so the number of repeats in the sequence will not exceed 1000 Heuristic based selection of repeat length so the number of repeats in the sequence will not exceed 1000 1k 1k % % Resets repeats identity to 100% Resets repeats identity to 100% 100 100 Minimum distance between repeats Minimum distance between repeats Maximum distance between repeats Maximum distance between repeats Advanced Advanced Advanced parameters Advanced parameters Custom algorithm Custom algorithm Search only for repeats that lie inside of an annotated region Search only for repeats that lie inside of an annotated region ... ... Search only for repeats that have an annotated region inside Search only for repeats that have an annotated region inside Filter repeats that have an annotated region inside Filter repeats that have an annotated region inside Search for inverted repeats Search for inverted repeats Region to process Region to process Base Base Repeat finder parameters Repeat finder parameters Number of bases in a sliding window that is moved along the sequence Number of bases in a sliding window that is moved along the sequence Window size Window size How similar the two windows of the sequence How similar the two windows of the sequence Minimum indentity per window Minimum indentity per window Nested repeats filter algorithm Nested repeats filter algorithm Exclude tandems areas Exclude tandems areas FindTandemsDialog Tandem preset Tandem preset Min period Min period n n Max period Max period Advanced Advanced Advanced parameters Advanced parameters Algorithm Algorithm Minimum tandem size Minimum tandem size Minimum repeat count Minimum repeat count x x Show overlapped tandems Show overlapped tandems Region to process Region to process Find Tandems Find Tandems Base Base Tandem finder parameters Tandem finder parameters U2::ExactSizedTandemFinder Find %1-period tandems Find %1-period tandems U2::FindRepeatsDialog Start Start Cancel Cancel Auto Auto Suffix index Suffix index Diagonals Diagonals Disjoint repeats Disjoint repeats No filtering No filtering Unique repeats Unique repeats Error Error No annotations found: %1 No annotations found: %1 Not enough memory error ocurred while preparing data. Try to set smaller region. Not enough memory error ocurred while preparing data. Try to set smaller region. Cannot create an annotation object. Please check settings Cannot create an annotation object. Please check settings Warning Warning Search with given identity %1% and length more then 80m bps can take very long time. Approximate repeat searching time for 80m bp with 95% identity is 40 minutes on Intel Core 2 Quad Q9500. Do you want to continue? Search with given identity %1% and length more then 80m bps can take very long time. Approximate repeat searching time for 80m bp with 95% identity is 40 minutes on Intel Core 2 Quad Q9500. Do you want to continue? A problem occurred during finding repeats. The sequence is no more available. A problem occurred during finding repeats. The sequence is no more available. Estimated repeats count: %1 Estimated repeats count: %1 Estimated repeats count hint is based on the active settings and random sequence model Estimated repeats count hint is based on the active settings and random sequence model U2::FindRepeatsTask Find repeats in a single sequence Find repeats in a single sequence Rev-complementing sequence Rev-complementing sequence Searching repeats ... Searching repeats ... Filtering unique results Filtering unique results Filtering nested results Filtering nested results Repeat search time %1 sec Repeat search time %1 sec Unique repeats filtering time %1 sec, results before: %2, filtered: %3, after %4 Unique repeats filtering time %1 sec, results before: %2, filtered: %3, after %4 Nested repeats filtering time %1 sec, results before: %2, filtered: %3, after %4 Nested repeats filtering time %1 sec, results before: %2, filtered: %3, after %4 U2::FindRepeatsToAnnotationsTask Find repeats to annotations Find repeats to annotations Found %1 repeat regions Found %1 repeat regions U2::FindTandemsDialog Start Start Cancel Cancel Suffix array Suffix array Suffix array (optimized) Suffix array (optimized) All All Micro-satellites Micro-satellites Mini-satellites Mini-satellites Big-period tandems Big-period tandems Custom Custom Error Error No annotations found: %1 "No annotations found: %1 Not enough memory error ocurred while preparing data. Try to set smaller region. Not enough memory error ocurred while preparing data. Try to set smaller region. Cannot create an annotation object. Please check settings Cannot create an annotation object. Please check settings U2::FindTandemsToAnnotationsTask Find repeats to annotations Find repeats to annotations Found %1 repeat regions Found %1 repeat regions U2::LargeSizedTandemFinder Find big-period tandems Find big-period tandems U2::LocalWorkflow::RepeatPrompter unset unset from %1 from %1 inverted inverted direct direct For each sequence%1, find %2 repeats. Detect %3% identical repeats not shorter than %4 bps. Output the list of found regions annotated as %5. For each sequence%1, find %2 repeats. Detect %3% identical repeats not shorter than %4 bps. Output the list of found regions annotated as %5. U2::LocalWorkflow::RepeatWorker Input sequences Input sequences A nucleotide sequence to search repeats in. A nucleotide sequence to search repeats in. Repeat annotations Repeat annotations A set of annotations marking repeats found in the sequence. A set of annotations marking repeats found in the sequence. Annotate as Annotate as Name of the result annotations marking found repeats. Name of the result annotations marking found repeats. Identity Identity Repeats identity. Repeats identity. Min length Min length Minimum length of repeats. Minimum length of repeats. Min distance Min distance Minimum distance between repeats. Minimum distance between repeats. Max distance Max distance Maximum distance between repeats. Maximum distance between repeats. Inverted Inverted Search for inverted repeats. Search for inverted repeats. Filter algorithm Filter algorithm Filter repeats algorithm. Filter repeats algorithm. Algorithm Algorithm Control over variations of algorithm. Control over variations of algorithm. Parallel threads Parallel threads Number of parallel threads used for the task. Number of parallel threads used for the task. Exclude tandems Exclude tandems Exclude tandems areas before find repeat task is run. Exclude tandems areas before find repeat task is run. Apply 'Max distance' attribute Apply 'Max distance' attribute Apply 'Max distance' attribute. Apply 'Max distance' attribute. Apply 'Min distance' attribute Apply 'Min distance' attribute Find Repeats Find Repeats Finds repeats in each supplied sequence, stores found regions as annotations. Finds repeats in each supplied sequence, stores found regions as annotations. Any Any result name is empty, default name used result name is empty, default name used Incorrect value: identity value must be between 0 and 100 Incorrect value: identity value must be between 0 and 100 Incorrect value: minimal distance must be greater then zero Incorrect value: minimal distance must be greater then zero Sequence alphabet is not nucleic! Sequence alphabet is not nucleic! Found %1 repeats Found %1 repeats U2::QDRepeatActor inverted direct Finds %1 repeats. Detects %2 identical repeats not shorter than %3 bps. Finds %1 repeats. Detects %2 identical repeats not shorter than %3 bps. Sequence should be nucleic Sequence should be nucleic RepeatQDTask RepeatQDTask Repeats Repeats Finds repeats in supplied sequence, stores found regions as annotations. Finds repeats in supplied sequence, stores found regions as annotations. Identity Identity Repeats identity. Repeats identity. Min length Min length Minimum length of repeats. Minimum length of repeats. Inverted Inverted Search for inverted repeats. Search for inverted repeats. Filter algorithm Filter algorithm Filter nested repeats algorithm. Filter nested repeats algorithm. Algorithm Algorithm Control over variations of algorithm. Control over variations of algorithm. Parallel threads Parallel threads Number of parallel threads used for the task. Number of parallel threads used for the task. Max length Max length Maximum length of repeats. Maximum length of repeats. Exclude tandems Exclude tandems Exclude tandems areas before find repeat task is run. Exclude tandems areas before find repeat task is run. U2::QDTandemActor Searches for tandem repeats with period size between %1 and %2. Searches for tandem repeats with period size between %1 and %2. TandemQDTask TandemQDTask Tandem Repeats Tandem Repeats Finds tandem repeats in a supplied sequence, stores found regions as annotations. Finds tandem repeats in a supplied sequence, stores found regions as annotations. Min period Min period Minimum acceptable repeat length measured in base symbols. Minimum acceptable repeat length measured in base symbols. Max period Max period Maximum acceptable repeat length measured in base symbols. Maximum acceptable repeat length measured in base symbols. Algorithm Algorithm The algorithm parameter allows one to select the search algorithm. The default and a fast one is the optimized suffix array algorithm. The algorithm parameter allows one to select the search algorithm. The default and a fast one is the optimized suffix array algorithm. Min tandem size Min tandem size The minimum tandem size sets the limit on minimum acceptable length of the tandem, i.e. the minimum total repeats length of the searched tandem. The minimum tandem size sets the limit on minimum acceptable length of the tandem, i.e. the minimum total repeats length of the searched tandem. Min repeat count Min repeat count The minimum number of repeats of a searched tandem. The minimum number of repeats of a searched tandem. Search for overlapped tandems Search for overlapped tandems If this parameter is set to True then overlapped tandems should be included into the result. If this parameter is set to True then overlapped tandems should be included into the result. bp bp Parallel threads Parallel threads Number of parallel threads used for the task. Number of parallel threads used for the task. x x U2::RFAlgorithmBase Find Repeats Find Repeats Repeat length is too large: %1, sequence size: %2 Repeat length is too large: %1, sequence size: %2 U2::RFDiagonalWKSubtask Find repeats subtask (diagonal) Find repeats subtask (diagonal) U2::RFSArrayWKAlgorithm Memory allocation error, size: %1 Memory allocation error, size: %1 U2::RFSArrayWKSubtask Find repeats subtask (suffixWK) Find repeats subtask (suffixWK) U2::RFSArrayWSubtask Find repeats subtask (suffix) Find repeats subtask (suffix) U2::RepeatFinderPlugin Repeats Finder Repeats Finder Search for repeated elements in genetic sequences Search for repeated elements in genetic sequences U2::RepeatViewContext Find repeats... Find repeats... Find tandems... Find tandems... U2::RevComplSequenceTask Reverse-complement sequence Reverse-complement sequence Reverse complement sequence Reverse complement sequence Can't find complement translation for alphabet: %1 Can't find complement translation for alphabet: %1 U2::TandemFinder Find tandems finished %1 Find tandems finished %1 Find tandems Find tandems U2::TandemFinder_Region Find tandems in %1 region Find tandems in %1 region