KalignDialog Align with Kalign Align with Kalign Input and output Input and output Input file Input file ... ... Output file Output file Advanced options Advanced options Gap open penalty Gap open penalty Gap extension penalty Gap extension penalty Terminal gap penalty Terminal gap penalty Bonus score Bonus score Translate to amino when aligning Translate to amino when aligning PairwiseAlignmentHirschbergOptionsPanelMainWidget Form Form Gap open penalty Gap open penalty Gap extension penalty Gap extension penalty Terminate gap penalty Terminate gap penalty Bonus score Bonus score U2::KalignAdapter Internal Kalign error: %1 Internal Kalign error: %1 U2::KalignAlignWithExtFileSpecifyDialogController Align Align Cancel Cancel Open an alignment file Open an alignment file Save an multiple alignment file Save an multiple alignment file Kalign with Align Align with Kalign Input file is not set! Input file is not set! Output file is not set! Output file is not set! U2::KalignDialogController Align Align Cancel Cancel U2::KalignGObjectRunFromSchemaTask Workflow wrapper '%1' Workflow wrapper '%1' KAlign align '%1' KAlign align '%1' U2::KalignGObjectTask KALIGN align '%1' KALIGN align '%1' U2::KalignMSAEditorContext Align with Kalign... Align with Kalign... U2::KalignPlugin Kalign Kalign A port of Kalign package for multiple sequence alignment. Check http://msa.sbc.su.se for the original version A port of Kalign package for multiple sequence alignment. Check http://msa.sbc.su.se for the original version Align with Kalign... Align with Kalign... U2::KalignTask KALIGN alignment KALIGN alignment Unsupported alphabet: %1 Unsupported alphabet: %1 Kalign alignment started Kalign alignment started Kalign alignment successfully finished Kalign alignment successfully finished U2::LocalWorkflow::KalignPrompter from %1 from %1 Aligns each MSA supplied <u>%1</u> with "<u>Kalign</u>". Aligns each MSA supplied <u>%1</u> with "<u>Kalign</u>". U2::LocalWorkflow::KalignWorker Input MSA Input MSA Input MSA to process. Input MSA to process. Kalign result MSA Kalign result MSA The result of the Kalign alignment. The result of the Kalign alignment. Gap open penalty Gap open penalty The penalty for opening/closing a gap. Half the value will be subtracted from the alignment score when opening, and half when closing a gap. The penalty for opening/closing a gap. Half the value will be subtracted from the alignment score when opening, and half when closing a gap. Gap extension penalty Gap extension penalty The penalty for extending a gap. The penalty for extending a gap. Terminal gap penalty Terminal gap penalty The penalty to extend gaps from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences. The penalty to extend gaps from the N/C terminal of protein or 5'/3' terminal of nucleotide sequences. Bonus score Bonus score A bonus score that is added to each pair of aligned residues. A bonus score that is added to each pair of aligned residues. Align with Kalign Align with Kalign Aligns multiple sequence alignments (MSAs) supplied with Kalign.<p>Kalign is a fast and accurate multiple sequence alignment tool. The original version of the tool can be found on <a href="http://msa->sbc.su.se">http://msa->sbc.su.se</a>. Aligns multiple sequence alignments (MSAs) supplied with Kalign.<p>Kalign is a fast and accurate multiple sequence alignment tool. The original version of the tool can be found on <a href="http://msa.sbc.su.se">http://msa.sbc.su.se</a>. Aligns multiple sequence alignments (MSAs) supplied with Kalign.<p>Kalign is a fast and accurate multiple sequence alignment tool. The original version of the tool can be found on <a href="http://msa.sbc.su.se">http://msa.sbc.su.se</a>. An empty MSA '%1' has been supplied to Kalign. An empty MSA '%1' has been supplied to Kalign. Aligned %1 with Kalign Aligned %1 with Kalign