############################################################################# # Makefile for building: libumuscle.so.1.0.0 # Generated by qmake (3.0) (Qt 5.5.1) # Project: umuscle.pro # Template: lib ############################################################################# MAKEFILE = Makefile.Release ####### Compiler, tools and options CC = gcc CXX = g++ DEFINES = -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.29.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=29 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/home/birch/BIRCH/local/pkg/ugene-1.29.0/share/ugene/data\" -DQT_DLL -DNDEBUG -DPLUGIN_ID=\"umuscle\" -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_SVG_LIB -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_SCRIPT_LIB -DQT_NETWORK_LIB -DQT_XML_LIB -DQT_CORE_LIB CFLAGS = -m64 -pipe -O2 -D_REENTRANT -w -fPIC $(DEFINES) CXXFLAGS = -m64 -pipe -O2 -D_REENTRANT -w -fPIC $(DEFINES) INCPATH = -I. -Isrc -I_tmp -I../../include -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtWebKit -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtScript -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -I_tmp/moc/release -I_tmp/ui -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 QMAKE = /usr/lib/x86_64-linux-gnu/qt5/bin/qmake DEL_FILE = rm -f CHK_DIR_EXISTS= test -d MKDIR = mkdir -p COPY = cp -f COPY_FILE = cp -f COPY_DIR = cp -f -R INSTALL_FILE = install -m 644 -p INSTALL_PROGRAM = install -m 755 -p INSTALL_DIR = cp -f -R DEL_FILE = rm -f SYMLINK = ln -f -s DEL_DIR = rmdir MOVE = mv -f TAR = tar -cf COMPRESS = gzip -9f DISTNAME = umuscle1.0.0 DISTDIR = /home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp/obj/release/umuscle1.0.0 LINK = g++ LFLAGS = -m64 -Wl,-O1 -Wl,-rpath-link,/usr/lib/x86_64-linux-gnu -shared -Wl,-soname,libumuscle.so.1 LIBS = $(SUBLIBS) -L/usr/X11R6/lib64 -lqscore -L../../_release -lU2Core -lU2Algorithm -lU2Formats -lU2Gui -lU2View -lU2Test -lU2Lang -lU2Designer -lQt5WebKit -lQt5Svg -lQt5Widgets -lQt5Gui -lQt5Script -lQt5Network -lQt5Xml -lQt5Core -lpthread -lGL AR = ar cqs RANLIB = SED = sed STRIP = strip ####### Output directory OBJECTS_DIR = _tmp/obj/release/ ####### Files SOURCES = src/MuscleAdapter.cpp \ src/MuscleAlignDialogController.cpp \ src/MuscleParallel.cpp \ src/MusclePlugin.cpp \ src/MuscleTask.cpp \ src/MuscleUtils.cpp \ src/MuscleWorker.cpp \ src/MuscleWorkPool.cpp \ src/ProfileToProfileWorker.cpp \ src/refinehorizP.cpp \ src/refinevertP.cpp \ src/TaskLocalStorage.cpp \ src/muscle/aligngivenpath.cpp \ src/muscle/aligngivenpathsw.cpp \ src/muscle/aligntwomsas.cpp \ src/muscle/aligntwoprofs.cpp \ src/muscle/aln.cpp \ src/muscle/alpha.cpp \ src/muscle/anchors.cpp \ src/muscle/bittraceback.cpp \ src/muscle/blosum62.cpp \ src/muscle/blosumla.cpp \ src/muscle/clust.cpp \ src/muscle/cluster.cpp \ src/muscle/clwwt.cpp \ src/muscle/color.cpp \ src/muscle/cons.cpp \ src/muscle/diaglist.cpp \ src/muscle/diffobjscore.cpp \ src/muscle/diffpaths.cpp \ src/muscle/difftrees.cpp \ src/muscle/difftreese.cpp \ src/muscle/distcalc.cpp \ src/muscle/distfunc.cpp \ src/muscle/distpwkimura.cpp \ src/muscle/domuscle.cpp \ src/muscle/dosp.cpp \ src/muscle/dpreglist.cpp \ src/muscle/drawtree.cpp \ src/muscle/edgelist.cpp \ src/muscle/enumopts.cpp \ src/muscle/enumtostr.cpp \ src/muscle/estring.cpp \ src/muscle/fasta.cpp \ src/muscle/fasta2.cpp \ src/muscle/fastclust.cpp \ src/muscle/fastdist.cpp \ src/muscle/fastdistjones.cpp \ src/muscle/fastdistkbit.cpp \ src/muscle/fastdistkmer.cpp \ src/muscle/fastdistmafft.cpp \ src/muscle/fastdistnuc.cpp \ src/muscle/fastscorepath2.cpp \ src/muscle/finddiags.cpp \ src/muscle/finddiagsn.cpp \ src/muscle/glbalign.cpp \ src/muscle/glbalign352.cpp \ src/muscle/glbaligndiag.cpp \ src/muscle/glbalignle.cpp \ src/muscle/glbalignsimple.cpp \ src/muscle/glbalignsp.cpp \ src/muscle/glbalignspn.cpp \ src/muscle/glbalignss.cpp \ src/muscle/glbalndimer.cpp \ src/muscle/globals.cpp \ src/muscle/globalslinux.cpp \ src/muscle/globalsosx.cpp \ src/muscle/globalsother.cpp \ src/muscle/globalswin32.cpp \ src/muscle/gonnet.cpp \ src/muscle/henikoffweight.cpp \ src/muscle/henikoffweightpb.cpp \ src/muscle/html.cpp \ src/muscle/hydro.cpp \ src/muscle/intmath.cpp \ src/muscle/local.cpp \ src/muscle/main.cpp \ src/muscle/makerootmsa.cpp \ src/muscle/makerootmsab.cpp \ src/muscle/maketree.cpp \ src/muscle/mhack.cpp \ src/muscle/mpam200.cpp \ src/muscle/msa.cpp \ src/muscle/msa2.cpp \ src/muscle/msadistkimura.cpp \ src/muscle/msf.cpp \ src/muscle/muscle.cpp \ src/muscle/muscle_context.cpp \ src/muscle/muscleout.cpp \ src/muscle/nucmx.cpp \ src/muscle/nwdasimple.cpp \ src/muscle/nwdasimple2.cpp \ src/muscle/nwdasmall.cpp \ src/muscle/nwrec.cpp \ src/muscle/nwsmall.cpp \ src/muscle/objscore.cpp \ src/muscle/objscore2.cpp \ src/muscle/objscoreda.cpp \ src/muscle/onexception.cpp \ src/muscle/options.cpp \ src/muscle/outweights.cpp \ src/muscle/pam200mafft.cpp \ src/muscle/params.cpp \ src/muscle/phy.cpp \ src/muscle/phy2.cpp \ src/muscle/phy3.cpp \ src/muscle/phy4.cpp \ src/muscle/phyfromclust.cpp \ src/muscle/phyfromfile.cpp \ src/muscle/physeq.cpp \ src/muscle/phytofile.cpp \ src/muscle/posgap.cpp \ src/muscle/ppscore.cpp \ src/muscle/profdb.cpp \ src/muscle/profile.cpp \ src/muscle/profilefrommsa.cpp \ src/muscle/progalign.cpp \ src/muscle/progress.cpp \ src/muscle/progressivealign.cpp \ src/muscle/pwpath.cpp \ src/muscle/readmx.cpp \ src/muscle/realigndiffs.cpp \ src/muscle/realigndiffse.cpp \ src/muscle/refine.cpp \ src/muscle/refinehoriz.cpp \ src/muscle/refinesubfams.cpp \ src/muscle/refinetree.cpp \ src/muscle/refinetreee.cpp \ src/muscle/refinevert.cpp \ src/muscle/refinew.cpp \ src/muscle/savebest.cpp \ src/muscle/scoredist.cpp \ src/muscle/scoregaps.cpp \ src/muscle/scorehistory.cpp \ src/muscle/scorepp.cpp \ src/muscle/seq.cpp \ src/muscle/seqvect.cpp \ src/muscle/setblosumweights.cpp \ src/muscle/setgscweights.cpp \ src/muscle/setnewhandler.cpp \ src/muscle/spfast.cpp \ src/muscle/sptest.cpp \ src/muscle/stabilize.cpp \ src/muscle/subfam.cpp \ src/muscle/subfams.cpp \ src/muscle/sw.cpp \ src/muscle/termgaps.cpp \ src/muscle/textfile.cpp \ src/muscle/threewaywt.cpp \ src/muscle/tomhydro.cpp \ src/muscle/traceback.cpp \ src/muscle/tracebackopt.cpp \ src/muscle/tracebacksw.cpp \ src/muscle/treefrommsa.cpp \ src/muscle/typetostr.cpp \ src/muscle/upgma2.cpp \ src/muscle/usage.cpp \ src/muscle/validateids.cpp \ src/muscle/vtml2.cpp \ src/muscle/writescorefile.cpp \ src/umuscle_tests/umuscleTests.cpp _tmp/rcc/qrc_umuscle.cpp \ _tmp/moc/release/moc_MuscleAdapter.cpp \ _tmp/moc/release/moc_MuscleAlignDialogController.cpp \ _tmp/moc/release/moc_MuscleParallel.cpp \ _tmp/moc/release/moc_MusclePlugin.cpp \ _tmp/moc/release/moc_MuscleTask.cpp \ _tmp/moc/release/moc_MuscleWorker.cpp \ _tmp/moc/release/moc_ProfileToProfileWorker.cpp \ _tmp/moc/release/moc_umuscleTests.cpp OBJECTS = _tmp/obj/release/MuscleAdapter.o \ _tmp/obj/release/MuscleAlignDialogController.o \ _tmp/obj/release/MuscleParallel.o \ _tmp/obj/release/MusclePlugin.o \ _tmp/obj/release/MuscleTask.o \ _tmp/obj/release/MuscleUtils.o \ _tmp/obj/release/MuscleWorker.o \ _tmp/obj/release/MuscleWorkPool.o \ _tmp/obj/release/ProfileToProfileWorker.o \ _tmp/obj/release/refinehorizP.o \ _tmp/obj/release/refinevertP.o \ _tmp/obj/release/TaskLocalStorage.o \ _tmp/obj/release/aligngivenpath.o \ _tmp/obj/release/aligngivenpathsw.o \ _tmp/obj/release/aligntwomsas.o \ _tmp/obj/release/aligntwoprofs.o \ _tmp/obj/release/aln.o \ _tmp/obj/release/alpha.o \ _tmp/obj/release/anchors.o \ _tmp/obj/release/bittraceback.o \ _tmp/obj/release/blosum62.o \ _tmp/obj/release/blosumla.o \ _tmp/obj/release/clust.o \ _tmp/obj/release/cluster.o \ _tmp/obj/release/clwwt.o \ _tmp/obj/release/color.o \ _tmp/obj/release/cons.o \ _tmp/obj/release/diaglist.o \ _tmp/obj/release/diffobjscore.o \ _tmp/obj/release/diffpaths.o \ _tmp/obj/release/difftrees.o \ _tmp/obj/release/difftreese.o \ _tmp/obj/release/distcalc.o \ _tmp/obj/release/distfunc.o \ _tmp/obj/release/distpwkimura.o \ _tmp/obj/release/domuscle.o \ _tmp/obj/release/dosp.o \ _tmp/obj/release/dpreglist.o \ _tmp/obj/release/drawtree.o \ _tmp/obj/release/edgelist.o \ _tmp/obj/release/enumopts.o \ _tmp/obj/release/enumtostr.o \ _tmp/obj/release/estring.o \ _tmp/obj/release/fasta.o \ _tmp/obj/release/fasta2.o \ _tmp/obj/release/fastclust.o \ _tmp/obj/release/fastdist.o \ _tmp/obj/release/fastdistjones.o \ _tmp/obj/release/fastdistkbit.o \ _tmp/obj/release/fastdistkmer.o \ _tmp/obj/release/fastdistmafft.o \ _tmp/obj/release/fastdistnuc.o \ _tmp/obj/release/fastscorepath2.o \ _tmp/obj/release/finddiags.o \ _tmp/obj/release/finddiagsn.o \ _tmp/obj/release/glbalign.o \ _tmp/obj/release/glbalign352.o \ _tmp/obj/release/glbaligndiag.o \ _tmp/obj/release/glbalignle.o \ _tmp/obj/release/glbalignsimple.o \ _tmp/obj/release/glbalignsp.o \ _tmp/obj/release/glbalignspn.o \ _tmp/obj/release/glbalignss.o \ _tmp/obj/release/glbalndimer.o \ _tmp/obj/release/globals.o \ _tmp/obj/release/globalslinux.o \ _tmp/obj/release/globalsosx.o \ _tmp/obj/release/globalsother.o \ _tmp/obj/release/globalswin32.o \ _tmp/obj/release/gonnet.o \ _tmp/obj/release/henikoffweight.o \ _tmp/obj/release/henikoffweightpb.o \ _tmp/obj/release/html.o \ _tmp/obj/release/hydro.o \ _tmp/obj/release/intmath.o \ _tmp/obj/release/local.o \ _tmp/obj/release/main.o \ _tmp/obj/release/makerootmsa.o \ _tmp/obj/release/makerootmsab.o \ _tmp/obj/release/maketree.o \ _tmp/obj/release/mhack.o \ _tmp/obj/release/mpam200.o \ _tmp/obj/release/msa.o \ _tmp/obj/release/msa2.o \ _tmp/obj/release/msadistkimura.o \ _tmp/obj/release/msf.o \ _tmp/obj/release/muscle.o \ _tmp/obj/release/muscle_context.o \ _tmp/obj/release/muscleout.o \ _tmp/obj/release/nucmx.o \ _tmp/obj/release/nwdasimple.o \ _tmp/obj/release/nwdasimple2.o \ _tmp/obj/release/nwdasmall.o \ _tmp/obj/release/nwrec.o \ _tmp/obj/release/nwsmall.o \ _tmp/obj/release/objscore.o \ _tmp/obj/release/objscore2.o \ _tmp/obj/release/objscoreda.o \ _tmp/obj/release/onexception.o \ _tmp/obj/release/options.o \ _tmp/obj/release/outweights.o \ _tmp/obj/release/pam200mafft.o \ _tmp/obj/release/params.o \ _tmp/obj/release/phy.o \ _tmp/obj/release/phy2.o \ _tmp/obj/release/phy3.o \ _tmp/obj/release/phy4.o \ _tmp/obj/release/phyfromclust.o \ _tmp/obj/release/phyfromfile.o \ _tmp/obj/release/physeq.o \ _tmp/obj/release/phytofile.o \ _tmp/obj/release/posgap.o \ _tmp/obj/release/ppscore.o \ _tmp/obj/release/profdb.o \ _tmp/obj/release/profile.o \ _tmp/obj/release/profilefrommsa.o \ _tmp/obj/release/progalign.o \ _tmp/obj/release/progress.o \ _tmp/obj/release/progressivealign.o \ _tmp/obj/release/pwpath.o \ _tmp/obj/release/readmx.o \ _tmp/obj/release/realigndiffs.o \ _tmp/obj/release/realigndiffse.o \ _tmp/obj/release/refine.o \ _tmp/obj/release/refinehoriz.o \ _tmp/obj/release/refinesubfams.o \ _tmp/obj/release/refinetree.o \ _tmp/obj/release/refinetreee.o \ _tmp/obj/release/refinevert.o \ _tmp/obj/release/refinew.o \ _tmp/obj/release/savebest.o \ _tmp/obj/release/scoredist.o \ _tmp/obj/release/scoregaps.o \ _tmp/obj/release/scorehistory.o \ _tmp/obj/release/scorepp.o \ _tmp/obj/release/seq.o \ _tmp/obj/release/seqvect.o \ _tmp/obj/release/setblosumweights.o \ _tmp/obj/release/setgscweights.o \ _tmp/obj/release/setnewhandler.o \ _tmp/obj/release/spfast.o \ _tmp/obj/release/sptest.o \ _tmp/obj/release/stabilize.o \ _tmp/obj/release/subfam.o \ _tmp/obj/release/subfams.o \ _tmp/obj/release/sw.o \ _tmp/obj/release/termgaps.o \ _tmp/obj/release/textfile.o \ _tmp/obj/release/threewaywt.o \ _tmp/obj/release/tomhydro.o \ _tmp/obj/release/traceback.o \ _tmp/obj/release/tracebackopt.o \ _tmp/obj/release/tracebacksw.o \ _tmp/obj/release/treefrommsa.o \ _tmp/obj/release/typetostr.o \ _tmp/obj/release/upgma2.o \ _tmp/obj/release/usage.o \ _tmp/obj/release/validateids.o \ _tmp/obj/release/vtml2.o \ _tmp/obj/release/writescorefile.o \ _tmp/obj/release/umuscleTests.o \ _tmp/obj/release/qrc_umuscle.o \ _tmp/obj/release/moc_MuscleAdapter.o \ _tmp/obj/release/moc_MuscleAlignDialogController.o \ _tmp/obj/release/moc_MuscleParallel.o \ _tmp/obj/release/moc_MusclePlugin.o \ _tmp/obj/release/moc_MuscleTask.o \ _tmp/obj/release/moc_MuscleWorker.o \ _tmp/obj/release/moc_ProfileToProfileWorker.o \ _tmp/obj/release/moc_umuscleTests.o DIST = /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/spec_pre.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/linux.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/sanitize.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/gcc-base.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/gcc-base-unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/g++-base.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/common/g++-unix.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/qconfig.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_bootstrap_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_concurrent.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_concurrent_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_core.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_core_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_dbus.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_dbus_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_eglfs_device_lib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_gui.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_gui_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_network.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_network_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_opengl.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_opengl_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_openglextensions.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_openglextensions_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_platformsupport_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_printsupport.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_printsupport_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_qml.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_qmltest.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_quick.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_quickwidgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_script.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_scripttools.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_sql.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_sql_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_svg.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_testlib.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_testlib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_webkit.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_webkitwidgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_widgets.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_widgets_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xcb_qpa_lib_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xml.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/modules/qt_lib_xml_private.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt_functions.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt_config.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64/qmake.conf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/spec_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exclusive_builds.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/default_pre.prf \ ../../ugene_version.pri \ ../../ugene_globals.pri \ ../../ugene_lib_common.pri \ ../../ugene_plugin_descriptor.pri \ ../../ugene_plugin_common.pri \ umuscle.pri \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/resolve_config.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exclusive_builds_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/default_post.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/build_pass.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/unix/thread.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/qt.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/resources.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/moc.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/unix/opengl.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/uic.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/warn_off.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/testcase_targets.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/exceptions.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/yacc.prf \ /usr/lib/x86_64-linux-gnu/qt5/mkspecs/features/lex.prf \ umuscle.pro src/MuscleAdapter.h \ src/MuscleAlignDialogController.h \ src/MuscleConstants.h \ src/MuscleParallel.h \ src/MusclePlugin.h \ src/MuscleTask.h \ src/MuscleUtils.h \ src/MuscleWorker.h \ src/MuscleWorkPool.h \ src/ProfileToProfileWorker.h \ src/TaskLocalStorage.h \ src/muscle/alpha.h \ src/muscle/clust.h \ src/muscle/cluster.h \ src/muscle/clustset.h \ src/muscle/clustsetdf.h \ src/muscle/clustsetmsa.h \ src/muscle/diaglist.h \ src/muscle/distcalc.h \ src/muscle/distfunc.h \ src/muscle/dpregionlist.h \ src/muscle/dpreglist.h \ src/muscle/edgelist.h \ src/muscle/enumopts.h \ src/muscle/enums.h \ src/muscle/estring.h \ src/muscle/gapscoredimer.h \ src/muscle/gonnet.h \ src/muscle/intmath.h \ src/muscle/msa.h \ src/muscle/msadist.h \ src/muscle/msadistkimura.h \ src/muscle/msadistmafft.h \ src/muscle/muscle.h \ src/muscle/muscle_context.h \ src/muscle/objscore.h \ src/muscle/params.h \ src/muscle/profile.h \ src/muscle/pwpath.h \ src/muscle/scorehistory.h \ src/muscle/seq.h \ src/muscle/seqvect.h \ src/muscle/textfile.h \ src/muscle/timing.h \ src/muscle/tree.h \ src/muscle/types.h \ src/muscle/unixio.h \ src/umuscle_tests/umuscleTests.h src/MuscleAdapter.cpp \ src/MuscleAlignDialogController.cpp \ src/MuscleParallel.cpp \ src/MusclePlugin.cpp \ src/MuscleTask.cpp \ src/MuscleUtils.cpp \ src/MuscleWorker.cpp \ src/MuscleWorkPool.cpp \ src/ProfileToProfileWorker.cpp \ src/refinehorizP.cpp \ src/refinevertP.cpp \ src/TaskLocalStorage.cpp \ src/muscle/aligngivenpath.cpp \ src/muscle/aligngivenpathsw.cpp \ src/muscle/aligntwomsas.cpp \ src/muscle/aligntwoprofs.cpp \ src/muscle/aln.cpp \ src/muscle/alpha.cpp \ src/muscle/anchors.cpp \ src/muscle/bittraceback.cpp \ src/muscle/blosum62.cpp \ src/muscle/blosumla.cpp \ src/muscle/clust.cpp \ src/muscle/cluster.cpp \ src/muscle/clwwt.cpp \ src/muscle/color.cpp \ src/muscle/cons.cpp \ src/muscle/diaglist.cpp \ src/muscle/diffobjscore.cpp \ src/muscle/diffpaths.cpp \ src/muscle/difftrees.cpp \ src/muscle/difftreese.cpp \ src/muscle/distcalc.cpp \ src/muscle/distfunc.cpp \ src/muscle/distpwkimura.cpp \ src/muscle/domuscle.cpp \ src/muscle/dosp.cpp \ src/muscle/dpreglist.cpp \ src/muscle/drawtree.cpp \ src/muscle/edgelist.cpp \ src/muscle/enumopts.cpp \ src/muscle/enumtostr.cpp \ src/muscle/estring.cpp \ src/muscle/fasta.cpp \ src/muscle/fasta2.cpp \ src/muscle/fastclust.cpp \ src/muscle/fastdist.cpp \ src/muscle/fastdistjones.cpp \ src/muscle/fastdistkbit.cpp \ src/muscle/fastdistkmer.cpp \ src/muscle/fastdistmafft.cpp \ src/muscle/fastdistnuc.cpp \ src/muscle/fastscorepath2.cpp \ src/muscle/finddiags.cpp \ src/muscle/finddiagsn.cpp \ src/muscle/glbalign.cpp \ src/muscle/glbalign352.cpp \ src/muscle/glbaligndiag.cpp \ src/muscle/glbalignle.cpp \ src/muscle/glbalignsimple.cpp \ src/muscle/glbalignsp.cpp \ src/muscle/glbalignspn.cpp \ src/muscle/glbalignss.cpp \ src/muscle/glbalndimer.cpp \ src/muscle/globals.cpp \ src/muscle/globalslinux.cpp \ src/muscle/globalsosx.cpp \ src/muscle/globalsother.cpp \ src/muscle/globalswin32.cpp \ src/muscle/gonnet.cpp \ src/muscle/henikoffweight.cpp \ src/muscle/henikoffweightpb.cpp \ src/muscle/html.cpp \ src/muscle/hydro.cpp \ src/muscle/intmath.cpp \ src/muscle/local.cpp \ src/muscle/main.cpp \ src/muscle/makerootmsa.cpp \ src/muscle/makerootmsab.cpp \ src/muscle/maketree.cpp \ src/muscle/mhack.cpp \ src/muscle/mpam200.cpp \ src/muscle/msa.cpp \ src/muscle/msa2.cpp \ src/muscle/msadistkimura.cpp \ src/muscle/msf.cpp \ src/muscle/muscle.cpp \ src/muscle/muscle_context.cpp \ src/muscle/muscleout.cpp \ src/muscle/nucmx.cpp \ src/muscle/nwdasimple.cpp \ src/muscle/nwdasimple2.cpp \ src/muscle/nwdasmall.cpp \ src/muscle/nwrec.cpp \ src/muscle/nwsmall.cpp \ src/muscle/objscore.cpp \ src/muscle/objscore2.cpp \ src/muscle/objscoreda.cpp \ src/muscle/onexception.cpp \ src/muscle/options.cpp \ src/muscle/outweights.cpp \ src/muscle/pam200mafft.cpp \ src/muscle/params.cpp \ src/muscle/phy.cpp \ src/muscle/phy2.cpp \ src/muscle/phy3.cpp \ src/muscle/phy4.cpp \ src/muscle/phyfromclust.cpp \ src/muscle/phyfromfile.cpp \ src/muscle/physeq.cpp \ src/muscle/phytofile.cpp \ src/muscle/posgap.cpp \ src/muscle/ppscore.cpp \ src/muscle/profdb.cpp \ src/muscle/profile.cpp \ src/muscle/profilefrommsa.cpp \ src/muscle/progalign.cpp \ src/muscle/progress.cpp \ src/muscle/progressivealign.cpp \ src/muscle/pwpath.cpp \ src/muscle/readmx.cpp \ src/muscle/realigndiffs.cpp \ src/muscle/realigndiffse.cpp \ src/muscle/refine.cpp \ src/muscle/refinehoriz.cpp \ src/muscle/refinesubfams.cpp \ src/muscle/refinetree.cpp \ src/muscle/refinetreee.cpp \ src/muscle/refinevert.cpp \ src/muscle/refinew.cpp \ src/muscle/savebest.cpp \ src/muscle/scoredist.cpp \ src/muscle/scoregaps.cpp \ src/muscle/scorehistory.cpp \ src/muscle/scorepp.cpp \ src/muscle/seq.cpp \ src/muscle/seqvect.cpp \ src/muscle/setblosumweights.cpp \ src/muscle/setgscweights.cpp \ src/muscle/setnewhandler.cpp \ src/muscle/spfast.cpp \ src/muscle/sptest.cpp \ src/muscle/stabilize.cpp \ src/muscle/subfam.cpp \ src/muscle/subfams.cpp \ src/muscle/sw.cpp \ src/muscle/termgaps.cpp \ src/muscle/textfile.cpp \ src/muscle/threewaywt.cpp \ src/muscle/tomhydro.cpp \ src/muscle/traceback.cpp \ src/muscle/tracebackopt.cpp \ src/muscle/tracebacksw.cpp \ src/muscle/treefrommsa.cpp \ src/muscle/typetostr.cpp \ src/muscle/upgma2.cpp \ src/muscle/usage.cpp \ src/muscle/validateids.cpp \ src/muscle/vtml2.cpp \ src/muscle/writescorefile.cpp \ src/umuscle_tests/umuscleTests.cpp QMAKE_TARGET = umuscle DESTDIR = ../../_release/plugins/#avoid trailing-slash linebreak TARGET = libumuscle.so.1.0.0 TARGETA = ../../_release/plugins/libumuscle.a TARGET0 = libumuscle.so TARGETD = libumuscle.so.1.0.0 TARGET1 = libumuscle.so.1 TARGET2 = libumuscle.so.1.0 first: all ####### Implicit rules .SUFFIXES: .o .c .cpp .cc .cxx .C .cpp.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .cc.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .cxx.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .C.o: $(CXX) -c $(CXXFLAGS) $(INCPATH) -o "$@" "$<" .c.o: $(CC) -c $(CFLAGS) $(INCPATH) -o "$@" "$<" ####### Build rules ../../_release/plugins/$(TARGET): _tmp/ui/ui_MuscleAlignDialog.h $(OBJECTS) $(SUBLIBS) $(OBJCOMP) @test -d ../../_release/plugins/ || mkdir -p ../../_release/plugins/ -$(DEL_FILE) $(TARGET) $(TARGET0) $(TARGET1) $(TARGET2) $(LINK) $(LFLAGS) -o $(TARGET) $(OBJECTS) $(LIBS) $(OBJCOMP) -ln -s $(TARGET) $(TARGET0) 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src/muscle/seq.h src/muscle/seqvect.h src/muscle/textfile.h src/muscle/timing.h src/muscle/tree.h src/muscle/types.h src/muscle/unixio.h src/umuscle_tests/umuscleTests.h $(DISTDIR)/ $(COPY_FILE) --parents src/MuscleAdapter.cpp src/MuscleAlignDialogController.cpp src/MuscleParallel.cpp src/MusclePlugin.cpp src/MuscleTask.cpp src/MuscleUtils.cpp src/MuscleWorker.cpp src/MuscleWorkPool.cpp src/ProfileToProfileWorker.cpp src/refinehorizP.cpp src/refinevertP.cpp src/TaskLocalStorage.cpp src/muscle/aligngivenpath.cpp src/muscle/aligngivenpathsw.cpp src/muscle/aligntwomsas.cpp src/muscle/aligntwoprofs.cpp src/muscle/aln.cpp src/muscle/alpha.cpp src/muscle/anchors.cpp src/muscle/bittraceback.cpp src/muscle/blosum62.cpp src/muscle/blosumla.cpp src/muscle/clust.cpp src/muscle/cluster.cpp src/muscle/clwwt.cpp src/muscle/color.cpp src/muscle/cons.cpp src/muscle/diaglist.cpp src/muscle/diffobjscore.cpp src/muscle/diffpaths.cpp src/muscle/difftrees.cpp src/muscle/difftreese.cpp src/muscle/distcalc.cpp src/muscle/distfunc.cpp src/muscle/distpwkimura.cpp src/muscle/domuscle.cpp src/muscle/dosp.cpp src/muscle/dpreglist.cpp src/muscle/drawtree.cpp src/muscle/edgelist.cpp src/muscle/enumopts.cpp src/muscle/enumtostr.cpp src/muscle/estring.cpp src/muscle/fasta.cpp src/muscle/fasta2.cpp src/muscle/fastclust.cpp src/muscle/fastdist.cpp src/muscle/fastdistjones.cpp src/muscle/fastdistkbit.cpp src/muscle/fastdistkmer.cpp src/muscle/fastdistmafft.cpp src/muscle/fastdistnuc.cpp src/muscle/fastscorepath2.cpp src/muscle/finddiags.cpp src/muscle/finddiagsn.cpp src/muscle/glbalign.cpp src/muscle/glbalign352.cpp src/muscle/glbaligndiag.cpp src/muscle/glbalignle.cpp src/muscle/glbalignsimple.cpp src/muscle/glbalignsp.cpp src/muscle/glbalignspn.cpp src/muscle/glbalignss.cpp src/muscle/glbalndimer.cpp src/muscle/globals.cpp src/muscle/globalslinux.cpp src/muscle/globalsosx.cpp src/muscle/globalsother.cpp src/muscle/globalswin32.cpp src/muscle/gonnet.cpp src/muscle/henikoffweight.cpp src/muscle/henikoffweightpb.cpp src/muscle/html.cpp src/muscle/hydro.cpp src/muscle/intmath.cpp src/muscle/local.cpp src/muscle/main.cpp src/muscle/makerootmsa.cpp src/muscle/makerootmsab.cpp src/muscle/maketree.cpp src/muscle/mhack.cpp src/muscle/mpam200.cpp src/muscle/msa.cpp src/muscle/msa2.cpp src/muscle/msadistkimura.cpp src/muscle/msf.cpp src/muscle/muscle.cpp src/muscle/muscle_context.cpp src/muscle/muscleout.cpp src/muscle/nucmx.cpp src/muscle/nwdasimple.cpp src/muscle/nwdasimple2.cpp src/muscle/nwdasmall.cpp src/muscle/nwrec.cpp src/muscle/nwsmall.cpp src/muscle/objscore.cpp src/muscle/objscore2.cpp src/muscle/objscoreda.cpp src/muscle/onexception.cpp src/muscle/options.cpp src/muscle/outweights.cpp src/muscle/pam200mafft.cpp src/muscle/params.cpp src/muscle/phy.cpp src/muscle/phy2.cpp src/muscle/phy3.cpp src/muscle/phy4.cpp src/muscle/phyfromclust.cpp src/muscle/phyfromfile.cpp src/muscle/physeq.cpp src/muscle/phytofile.cpp src/muscle/posgap.cpp src/muscle/ppscore.cpp src/muscle/profdb.cpp src/muscle/profile.cpp src/muscle/profilefrommsa.cpp src/muscle/progalign.cpp src/muscle/progress.cpp src/muscle/progressivealign.cpp src/muscle/pwpath.cpp src/muscle/readmx.cpp src/muscle/realigndiffs.cpp src/muscle/realigndiffse.cpp src/muscle/refine.cpp src/muscle/refinehoriz.cpp src/muscle/refinesubfams.cpp src/muscle/refinetree.cpp src/muscle/refinetreee.cpp src/muscle/refinevert.cpp src/muscle/refinew.cpp src/muscle/savebest.cpp src/muscle/scoredist.cpp src/muscle/scoregaps.cpp src/muscle/scorehistory.cpp src/muscle/scorepp.cpp src/muscle/seq.cpp src/muscle/seqvect.cpp src/muscle/setblosumweights.cpp src/muscle/setgscweights.cpp src/muscle/setnewhandler.cpp src/muscle/spfast.cpp src/muscle/sptest.cpp src/muscle/stabilize.cpp src/muscle/subfam.cpp src/muscle/subfams.cpp src/muscle/sw.cpp src/muscle/termgaps.cpp src/muscle/textfile.cpp src/muscle/threewaywt.cpp src/muscle/tomhydro.cpp src/muscle/traceback.cpp src/muscle/tracebackopt.cpp src/muscle/tracebacksw.cpp src/muscle/treefrommsa.cpp src/muscle/typetostr.cpp src/muscle/upgma2.cpp src/muscle/usage.cpp src/muscle/validateids.cpp src/muscle/vtml2.cpp src/muscle/writescorefile.cpp src/umuscle_tests/umuscleTests.cpp $(DISTDIR)/ $(COPY_FILE) --parents src/MuscleAlignDialog.ui $(DISTDIR)/ $(COPY_FILE) --parents transl/english.ts transl/russian.ts $(DISTDIR)/ clean: compiler_clean -$(DEL_FILE) $(OBJECTS) -$(DEL_FILE) *~ core *.core distclean: clean -$(DEL_FILE) ../../_release/plugins/$(TARGET) -$(DEL_FILE) ../../_release/plugins/$(TARGET0) ../../_release/plugins/$(TARGET1) ../../_release/plugins/$(TARGET2) $(TARGETA) -$(DEL_FILE) Makefile.Release ####### Sub-libraries mocclean: compiler_moc_header_clean compiler_moc_source_clean mocables: compiler_moc_header_make_all compiler_moc_source_make_all check: first compiler_rcc_make_all: _tmp/rcc/qrc_umuscle.cpp compiler_rcc_clean: -$(DEL_FILE) _tmp/rcc/qrc_umuscle.cpp _tmp/rcc/qrc_umuscle.cpp: umuscle.qrc \ images/muscle_16.png /usr/lib/x86_64-linux-gnu/qt5/bin/rcc -name umuscle umuscle.qrc -o _tmp/rcc/qrc_umuscle.cpp compiler_moc_header_make_all: _tmp/moc/release/moc_MuscleAdapter.cpp _tmp/moc/release/moc_MuscleAlignDialogController.cpp _tmp/moc/release/moc_MuscleParallel.cpp _tmp/moc/release/moc_MusclePlugin.cpp _tmp/moc/release/moc_MuscleTask.cpp _tmp/moc/release/moc_MuscleWorker.cpp _tmp/moc/release/moc_ProfileToProfileWorker.cpp _tmp/moc/release/moc_umuscleTests.cpp compiler_moc_header_clean: -$(DEL_FILE) _tmp/moc/release/moc_MuscleAdapter.cpp _tmp/moc/release/moc_MuscleAlignDialogController.cpp _tmp/moc/release/moc_MuscleParallel.cpp _tmp/moc/release/moc_MusclePlugin.cpp _tmp/moc/release/moc_MuscleTask.cpp _tmp/moc/release/moc_MuscleWorker.cpp _tmp/moc/release/moc_ProfileToProfileWorker.cpp _tmp/moc/release/moc_umuscleTests.cpp _tmp/moc/release/moc_MuscleAdapter.cpp: ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ src/MuscleAdapter.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/MuscleAdapter.h -o _tmp/moc/release/moc_MuscleAdapter.cpp _tmp/moc/release/moc_MuscleAlignDialogController.cpp: ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ _tmp/ui/ui_MuscleAlignDialog.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/MuscleAlignDialogController.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/MuscleAlignDialogController.h -o _tmp/moc/release/moc_MuscleAlignDialogController.cpp _tmp/moc/release/moc_MuscleParallel.cpp: src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ src/MuscleParallel.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/MuscleParallel.h -o _tmp/moc/release/moc_MuscleParallel.cpp _tmp/moc/release/moc_MusclePlugin.cpp: ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h \ src/MusclePlugin.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/MusclePlugin.h -o _tmp/moc/release/moc_MusclePlugin.cpp _tmp/moc/release/moc_MuscleTask.cpp: ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/MuscleTask.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/MuscleTask.h -o _tmp/moc/release/moc_MuscleTask.cpp _tmp/moc/release/moc_MuscleWorker.cpp: ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ src/MuscleWorker.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/MuscleWorker.h -o _tmp/moc/release/moc_MuscleWorker.cpp _tmp/moc/release/moc_ProfileToProfileWorker.cpp: ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ src/ProfileToProfileWorker.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/ProfileToProfileWorker.h -o _tmp/moc/release/moc_ProfileToProfileWorker.cpp _tmp/moc/release/moc_umuscleTests.cpp: ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/umuscle_tests/umuscleTests.h /usr/lib/x86_64-linux-gnu/qt5/bin/moc $(DEFINES) -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++-64 -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/src -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/plugins_3rdparty/umuscle/_tmp -I/home/birch/BIRCH/local/pkg/ugene-1.29.0/src/include -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWebKit -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtScript -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/include/c++/5 -I/usr/include/x86_64-linux-gnu/c++/5 -I/usr/include/c++/5/backward -I/usr/lib/gcc/x86_64-linux-gnu/5/include -I/usr/local/include -I/usr/lib/gcc/x86_64-linux-gnu/5/include-fixed -I/usr/include/x86_64-linux-gnu -I/usr/include src/umuscle_tests/umuscleTests.h -o _tmp/moc/release/moc_umuscleTests.cpp compiler_moc_source_make_all: compiler_moc_source_clean: compiler_uic_make_all: _tmp/ui/ui_MuscleAlignDialog.h compiler_uic_clean: -$(DEL_FILE) _tmp/ui/ui_MuscleAlignDialog.h _tmp/ui/ui_MuscleAlignDialog.h: src/MuscleAlignDialog.ui /usr/lib/x86_64-linux-gnu/qt5/bin/uic src/MuscleAlignDialog.ui -o _tmp/ui/ui_MuscleAlignDialog.h compiler_yacc_decl_make_all: compiler_yacc_decl_clean: compiler_yacc_impl_make_all: compiler_yacc_impl_clean: compiler_lex_make_all: compiler_lex_clean: compiler_clean: compiler_rcc_clean compiler_moc_header_clean compiler_uic_clean ####### Compile _tmp/obj/release/MuscleAdapter.o: src/MuscleAdapter.cpp src/MuscleAdapter.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ src/MuscleUtils.h \ src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/seqvect.h \ src/muscle/seq.h \ src/muscle/distfunc.h \ src/muscle/msa.h \ src/muscle/tree.h \ src/muscle/profile.h \ src/muscle/pwpath.h \ src/muscle/muscle_context.h \ src/muscle/estring.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ src/MuscleConstants.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Core/U2AlphabetUtils.h \ ../../corelibs/U2Core/src/util/U2AlphabetUtils.h \ ../../include/U2Core/TextUtils.h \ ../../corelibs/U2Core/src/util/TextUtils.h \ ../../include/U2Core/Timer.h \ ../../corelibs/U2Core/src/globals/Timer.h \ ../../include/U2Core/Counter.h \ ../../corelibs/U2Core/src/globals/Counter.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/MuscleAdapter.o src/MuscleAdapter.cpp _tmp/obj/release/MuscleAlignDialogController.o: src/MuscleAlignDialogController.cpp ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/BaseDocumentFormats.h \ ../../corelibs/U2Core/src/globals/BaseDocumentFormats.h \ ../../include/U2Core/global.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/DNATranslation.h \ ../../corelibs/U2Core/src/datatype/DNATranslation.h \ ../../include/U2Core/DocumentUtils.h \ ../../corelibs/U2Core/src/models/DocumentUtils.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/GUrlUtils.h \ ../../corelibs/U2Core/src/util/GUrlUtils.h \ ../../include/U2Gui/HelpButton.h \ ../../corelibs/U2Gui/src/util/HelpButton.h \ ../../include/U2Gui/LastUsedDirHelper.h \ ../../corelibs/U2Gui/src/util/LastUsedDirHelper.h \ ../../include/U2Gui/SaveDocumentController.h \ ../../corelibs/U2Gui/src/util/SaveDocumentController.h \ ../../include/U2Core/DocumentModel.h \ ../../include/U2Gui/U2FileDialog.h \ ../../corelibs/U2Gui/src/util/U2FileDialog.h \ src/MuscleAlignDialogController.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ _tmp/ui/ui_MuscleAlignDialog.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/MuscleAlignDialogController.o src/MuscleAlignDialogController.cpp _tmp/obj/release/MuscleParallel.o: src/MuscleParallel.cpp src/MuscleAdapter.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ src/MuscleParallel.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ src/MuscleUtils.h \ src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/seqvect.h \ src/muscle/seq.h \ src/muscle/distfunc.h \ src/muscle/msa.h \ src/muscle/tree.h \ src/muscle/profile.h \ src/muscle/pwpath.h \ src/muscle/muscle_context.h \ src/muscle/estring.h \ src/MuscleConstants.h \ src/MuscleWorkPool.h \ src/muscle/scorehistory.h \ src/TaskLocalStorage.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/MuscleParallel.o src/MuscleParallel.cpp _tmp/obj/release/MusclePlugin.o: src/MusclePlugin.cpp ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/global.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/QObjectScopedPointer.h \ ../../corelibs/U2Core/src/util/QObjectScopedPointer.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Gui/GUIUtils.h \ ../../corelibs/U2Gui/src/util/GUIUtils.h \ ../../corelibs/U2Gui/src/util/U2FileDialog.h \ ../../include/U2Gui/LastUsedDirHelper.h \ ../../corelibs/U2Gui/src/util/LastUsedDirHelper.h \ ../../include/U2Gui/ToolsMenu.h \ ../../corelibs/U2Gui/src/ToolsMenu.h \ ../../include/U2Lang/WorkflowSettings.h \ ../../corelibs/U2Lang/src/support/WorkflowSettings.h \ ../../include/U2Test/GTestFrameworkComponents.h \ ../../corelibs/U2Test/src/GTestFrameworkComponents.h \ ../../corelibs/U2Test/src/GTest.h \ ../../include/U2View/MSAEditor.h \ ../../corelibs/U2View/src/ov_msa/MSAEditor.h \ ../../corelibs/U2View/src/ov_msa/PhyTrees/MSAEditorTreeManager.h \ ../../include/U2Algorithm/CreatePhyTreeSettings.h \ ../../corelibs/U2Algorithm/src/phyltree/CreatePhyTreeSettings.h \ ../../include/U2Core/PhyTree.h \ ../../corelibs/U2Core/src/datatype/PhyTree.h \ ../../corelibs/U2View/src/ov_msa/MaEditor.h \ ../../include/U2Gui/ObjectViewModel.h \ ../../corelibs/U2Gui/src/ObjectViewModel.h \ ../../include/U2Core/SelectionModel.h \ ../../corelibs/U2Core/src/selection/SelectionModel.h \ ../../corelibs/U2Gui/src/MainWindow.h \ ../../include/U2Core/PluginModel.h \ ../../corelibs/U2Core/src/globals/PluginModel.h \ ../../include/U2Core/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceTypes.h \ ../../corelibs/U2Core/src/globals/ServiceModel.h \ ../../corelibs/U2Gui/src/NotificationsTypes.h \ ../../corelibs/U2View/src/ov_msa/MsaEditorWgt.h \ ../../corelibs/U2View/src/ov_msa/view_rendering/MaEditorWgt.h \ ../../corelibs/U2View/src/ov_msa/view_rendering/MaEditorUtils.h \ ../../include/U2View/MaEditorFactory.h \ ../../corelibs/U2View/src/ov_msa/MaEditorFactory.h \ src/MuscleAlignDialogController.h \ _tmp/ui/ui_MuscleAlignDialog.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ src/MusclePlugin.h \ src/MuscleWorker.h \ ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ src/ProfileToProfileWorker.h \ src/umuscle_tests/umuscleTests.h \ ../../include/U2Test/XMLTestUtils.h \ ../../corelibs/U2Test/src/xmltest/XMLTestUtils.h \ ../../include/U2Test/GTest.h \ ../../corelibs/U2Test/src/xmltest/XMLTestFormat.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/MusclePlugin.o src/MusclePlugin.cpp _tmp/obj/release/MuscleTask.o: src/MuscleTask.cpp ../../include/U2Core/AddDocumentTask.h \ ../../corelibs/U2Core/src/tasks/AddDocumentTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/BaseDocumentFormats.h \ ../../corelibs/U2Core/src/globals/BaseDocumentFormats.h \ ../../include/U2Core/Counter.h \ ../../corelibs/U2Core/src/globals/Counter.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/DocumentUtils.h \ ../../corelibs/U2Core/src/models/DocumentUtils.h \ ../../include/U2Core/IOAdapter.h \ ../../corelibs/U2Core/src/io/IOAdapter.h \ ../../include/U2Core/IOAdapterUtils.h \ ../../corelibs/U2Core/src/util/IOAdapterUtils.h \ ../../include/U2Core/LoadDocumentTask.h \ ../../corelibs/U2Core/src/tasks/LoadDocumentTask.h \ ../../include/U2Core/GObjectReference.h \ ../../include/U2Core/DocumentProviderTask.h \ ../../corelibs/U2Core/src/tasks/DocumentProviderTask.h \ ../../include/U2Core/MSAUtils.h \ ../../corelibs/U2Core/src/util/MSAUtils.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/ProjectModel.h \ ../../corelibs/U2Core/src/models/ProjectModel.h \ ../../include/U2Core/StateLockableDataModel.h \ ../../include/U2Core/TaskWatchdog.h \ ../../corelibs/U2Core/src/util/TaskWatchdog.h \ ../../include/U2Core/U2AlphabetUtils.h \ ../../corelibs/U2Core/src/util/U2AlphabetUtils.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/TextUtils.h \ ../../corelibs/U2Core/src/util/TextUtils.h \ ../../include/U2Core/Timer.h \ ../../corelibs/U2Core/src/globals/Timer.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ ../../include/U2Lang/SimpleWorkflowTask.h \ ../../corelibs/U2Lang/src/support/SimpleWorkflowTask.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../include/U2Lang/Attribute.h \ ../../include/U2Lang/WorkflowIOTasks.h \ ../../corelibs/U2Lang/src/support/WorkflowIOTasks.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/WorkflowSettings.h \ ../../corelibs/U2Lang/src/support/WorkflowSettings.h \ ../../include/U2Gui/OpenViewTask.h \ ../../corelibs/U2Gui/src/OpenViewTask.h \ src/MuscleAdapter.h \ src/MuscleConstants.h \ src/MuscleParallel.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ src/TaskLocalStorage.h \ src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/muscle_context.h \ src/muscle/profile.h \ src/muscle/msa.h \ src/muscle/pwpath.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/MuscleTask.o src/MuscleTask.cpp _tmp/obj/release/MuscleUtils.o: src/MuscleUtils.cpp src/MuscleUtils.h \ src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/seqvect.h \ src/muscle/seq.h \ src/muscle/distfunc.h \ src/muscle/msa.h \ src/muscle/tree.h \ src/muscle/profile.h \ src/muscle/pwpath.h \ src/muscle/muscle_context.h \ src/muscle/estring.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ src/MuscleAdapter.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/MuscleUtils.o src/MuscleUtils.cpp _tmp/obj/release/MuscleWorker.o: src/MuscleWorker.cpp ../../include/U2Core/FailTask.h \ ../../corelibs/U2Core/src/tasks/FailTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Designer/DelegateEditors.h \ ../../corelibs/U2Designer/src/DelegateEditors.h \ ../../include/U2Designer/URLLineEdit.h \ ../../corelibs/U2Designer/src/support/URLLineEdit.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Designer/src/PropertyWidget.h \ ../../include/U2Lang/ActorPrototypeRegistry.h \ ../../corelibs/U2Lang/src/model/ActorPrototypeRegistry.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/BaseActorCategories.h \ ../../corelibs/U2Lang/src/library/BaseActorCategories.h \ ../../include/U2Lang/BasePorts.h \ ../../corelibs/U2Lang/src/library/BasePorts.h \ ../../include/U2Lang/BaseSlots.h \ ../../corelibs/U2Lang/src/library/BaseSlots.h \ ../../include/U2Lang/BaseTypes.h \ ../../corelibs/U2Lang/src/library/BaseTypes.h \ ../../include/U2Lang/CoreLibConstants.h \ ../../corelibs/U2Lang/src/support/CoreLibConstants.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/NoFailTaskWrapper.h \ ../../corelibs/U2Lang/src/support/NoFailTaskWrapper.h \ ../../include/U2Lang/WorkflowEnv.h \ ../../corelibs/U2Lang/src/model/WorkflowEnv.h \ ../../include/U2Lang/ExternalToolCfg.h \ ../../corelibs/U2Lang/src/model/ExternalToolCfg.h \ ../../include/U2Lang/SchemaActorsRegistry.h \ ../../corelibs/U2Lang/src/model/SchemaActorsRegistry.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ src/MuscleAlignDialogController.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ _tmp/ui/ui_MuscleAlignDialog.h \ ../../include/U2Gui/DialogUtils.h \ ../../corelibs/U2Gui/src/util/DialogUtils.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ src/MuscleConstants.h \ src/MuscleWorker.h \ ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h \ src/TaskLocalStorage.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/MuscleWorker.o src/MuscleWorker.cpp _tmp/obj/release/MuscleWorkPool.o: src/MuscleWorkPool.cpp src/MuscleWorkPool.h \ src/MuscleParallel.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ src/MuscleUtils.h \ src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/seqvect.h \ src/muscle/seq.h \ src/muscle/distfunc.h \ src/muscle/msa.h \ src/muscle/tree.h \ src/muscle/profile.h \ src/muscle/pwpath.h \ src/muscle/muscle_context.h \ src/muscle/estring.h \ src/muscle/scorehistory.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/MuscleWorkPool.o src/MuscleWorkPool.cpp _tmp/obj/release/ProfileToProfileWorker.o: src/ProfileToProfileWorker.cpp ../../include/U2Core/AppContext.h \ ../../corelibs/U2Core/src/globals/AppContext.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/AppSettings.h \ ../../corelibs/U2Core/src/globals/AppSettings.h \ ../../include/U2Core/global.h \ ../../include/U2Core/AppResources.h \ ../../corelibs/U2Core/src/globals/AppResources.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/U2AlphabetUtils.h \ ../../corelibs/U2Core/src/util/U2AlphabetUtils.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/TextUtils.h \ ../../corelibs/U2Core/src/util/TextUtils.h \ ../../include/U2Core/Timer.h \ ../../corelibs/U2Core/src/globals/Timer.h \ ../../include/U2Core/Counter.h \ ../../corelibs/U2Core/src/globals/Counter.h \ ../../include/U2Core/U2OpStatusUtils.h \ ../../corelibs/U2Core/src/util/U2OpStatusUtils.h \ ../../include/U2Designer/DelegateEditors.h \ ../../corelibs/U2Designer/src/DelegateEditors.h \ ../../include/U2Designer/URLLineEdit.h \ ../../corelibs/U2Designer/src/support/URLLineEdit.h \ ../../include/U2Lang/ConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/ConfigurationEditor.h \ ../../include/U2Lang/Attribute.h \ ../../corelibs/U2Lang/src/model/Attribute.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/ScriptTask.h \ ../../corelibs/U2Core/src/tasks/ScriptTask.h \ ../../include/U2Lang/AttributeRelation.h \ ../../corelibs/U2Lang/src/model/AttributeRelation.h \ ../../include/U2Lang/Datatype.h \ ../../corelibs/U2Lang/src/model/Datatype.h \ ../../include/U2Lang/Descriptor.h \ ../../corelibs/U2Lang/src/model/Descriptor.h \ ../../include/U2Core/IdRegistry.h \ ../../corelibs/U2Core/src/globals/IdRegistry.h \ ../../include/U2Lang/ScriptLibrary.h \ ../../corelibs/U2Lang/src/library/script/ScriptLibrary.h \ ../../include/U2Lang/DbiDataHandler.h \ ../../corelibs/U2Lang/src/model/DbiDataHandler.h \ ../../include/U2Core/U2ObjectDbi.h \ ../../corelibs/U2Core/src/dbi/U2ObjectDbi.h \ ../../include/U2Core/U2Dbi.h \ ../../corelibs/U2Core/src/dbi/U2Dbi.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/U2Feature.h \ ../../corelibs/U2Core/src/datatype/U2Feature.h \ ../../include/U2Core/U2FeatureType.h \ ../../corelibs/U2Core/src/datatype/U2FeatureType.h \ ../../include/U2Core/U2Assembly.h \ ../../corelibs/U2Core/src/datatype/U2Assembly.h \ ../../include/U2Core/U2Sequence.h \ ../../corelibs/U2Core/src/datatype/U2Sequence.h \ ../../include/U2Core/U2Range.h \ ../../corelibs/U2Core/src/datatype/U2Range.h \ ../../include/U2Core/U2Attribute.h \ ../../corelibs/U2Core/src/datatype/U2Attribute.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Lang/SupportClass.h \ ../../corelibs/U2Lang/src/support/SupportClass.h \ ../../include/U2Lang/WorkflowContext.h \ ../../corelibs/U2Lang/src/model/WorkflowContext.h \ ../../include/U2Core/AppFileStorage.h \ ../../corelibs/U2Core/src/globals/AppFileStorage.h \ ../../corelibs/U2Core/src/dbi/U2SQLiteTripleStore.h \ ../../include/U2Lang/DbiDataStorage.h \ ../../corelibs/U2Lang/src/model/DbiDataStorage.h \ ../../include/U2Core/AnnotationData.h \ ../../corelibs/U2Core/src/datatype/AnnotationData.h \ ../../include/U2Core/U2Location.h \ ../../corelibs/U2Core/src/datatype/U2Location.h \ ../../include/U2Core/U2Qualifier.h \ ../../corelibs/U2Core/src/datatype/U2Qualifier.h \ ../../include/U2Core/AssemblyObject.h \ ../../corelibs/U2Core/src/gobjects/AssemblyObject.h \ ../../include/U2Core/GObjectTypes.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/DNASequenceObject.h \ ../../corelibs/U2Core/src/gobjects/DNASequenceObject.h \ ../../include/U2Core/U2DbiUtils.h \ ../../corelibs/U2Core/src/dbi/U2DbiUtils.h \ ../../include/U2Core/StrPackUtils.h \ ../../corelibs/U2Core/src/util/StrPackUtils.h \ ../../include/U2Core/U2DbiRegistry.h \ ../../corelibs/U2Core/src/dbi/U2DbiRegistry.h \ ../../include/U2Core/VariantTrackObject.h \ ../../corelibs/U2Core/src/gobjects/VariantTrackObject.h \ ../../include/U2Core/U2Variant.h \ ../../corelibs/U2Core/src/datatype/U2Variant.h \ ../../include/U2Lang/MessageMetadata.h \ ../../corelibs/U2Lang/src/model/MessageMetadata.h \ ../../include/U2Lang/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/WorkflowScriptEngine.h \ ../../corelibs/U2Lang/src/model/PortRelation.h \ ../../include/U2Lang/SchemaConfig.h \ ../../corelibs/U2Lang/src/model/SchemaConfig.h \ ../../include/U2Lang/AttributeInfo.h \ ../../corelibs/U2Lang/src/support/AttributeInfo.h \ ../../include/U2Lang/RunFileSystem.h \ ../../corelibs/U2Lang/src/model/RunFileSystem.h \ ../../corelibs/U2Designer/src/PropertyWidget.h \ ../../include/U2Lang/ActorPrototypeRegistry.h \ ../../corelibs/U2Lang/src/model/ActorPrototypeRegistry.h \ ../../include/U2Lang/ActorModel.h \ ../../corelibs/U2Lang/src/model/actor/Actor.h \ ../../include/U2Lang/Configuration.h \ ../../corelibs/U2Lang/src/model/Configuration.h \ ../../corelibs/U2Lang/src/model/ConfigurationValidator.h \ ../../include/U2Lang/Peer.h \ ../../corelibs/U2Lang/src/model/Peer.h \ ../../include/U2Lang/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/PortMapping.h \ ../../corelibs/U2Lang/src/model/wizard/SlotMapping.h \ ../../corelibs/U2Lang/src/model/wizard/IdMapping.h \ ../../corelibs/U2Lang/src/model/actor/ActorConfigurationEditor.h \ ../../corelibs/U2Lang/src/model/actor/ActorDocument.h \ ../../include/U2Lang/Actor.h \ ../../corelibs/U2Lang/src/model/actor/ActorPrototype.h \ ../../include/U2Lang/Port.h \ ../../corelibs/U2Lang/src/model/Port.h \ ../../corelibs/U2Lang/src/model/actor/ActorValidator.h \ ../../include/U2Lang/ConfigurationValidator.h \ ../../include/U2Lang/BaseActorCategories.h \ ../../corelibs/U2Lang/src/library/BaseActorCategories.h \ ../../include/U2Lang/BasePorts.h \ ../../corelibs/U2Lang/src/library/BasePorts.h \ ../../include/U2Lang/BaseSlots.h \ ../../corelibs/U2Lang/src/library/BaseSlots.h \ ../../include/U2Lang/BaseTypes.h \ ../../corelibs/U2Lang/src/library/BaseTypes.h \ ../../include/U2Lang/WorkflowEnv.h \ ../../corelibs/U2Lang/src/model/WorkflowEnv.h \ ../../include/U2Lang/ExternalToolCfg.h \ ../../corelibs/U2Lang/src/model/ExternalToolCfg.h \ ../../include/U2Lang/SchemaActorsRegistry.h \ ../../corelibs/U2Lang/src/model/SchemaActorsRegistry.h \ ../../include/U2Lang/Schema.h \ ../../corelibs/U2Lang/src/model/Schema.h \ ../../include/U2Lang/Aliasing.h \ ../../corelibs/U2Lang/src/model/Aliasing.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ src/ProfileToProfileWorker.h \ ../../include/U2Lang/LocalDomain.h \ ../../corelibs/U2Lang/src/library/LocalDomain.h \ ../../include/U2Core/ExternalToolRunTask.h \ ../../corelibs/U2Core/src/tasks/ExternalToolRunTask.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Lang/IntegralBus.h \ ../../corelibs/U2Lang/src/model/IntegralBus.h \ ../../include/U2Lang/IntegralBusModel.h \ ../../corelibs/U2Lang/src/model/IntegralBusModel.h \ ../../include/U2Lang/WorkflowTransport.h \ ../../corelibs/U2Lang/src/model/WorkflowTransport.h \ ../../include/U2Lang/WorkflowManager.h \ ../../corelibs/U2Lang/src/model/WorkflowManager.h \ ../../include/U2Lang/WorkflowUtils.h \ ../../corelibs/U2Lang/src/support/WorkflowUtils.h \ ../../include/U2Lang/Dataset.h \ ../../corelibs/U2Lang/src/model/url_attribute/Dataset.h \ ../../include/U2Core/FilesIterator.h \ ../../corelibs/U2Core/src/util/FilesIterator.h \ ../../include/U2Lang/SupportStructures.h \ ../../corelibs/U2Lang/src/support/SupportStructures.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/ProfileToProfileWorker.o src/ProfileToProfileWorker.cpp _tmp/obj/release/refinehorizP.o: src/refinehorizP.cpp src/MuscleParallel.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ src/MuscleWorkPool.h \ src/MuscleUtils.h \ src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/seqvect.h \ src/muscle/seq.h \ src/muscle/distfunc.h \ src/muscle/msa.h \ src/muscle/tree.h \ src/muscle/profile.h \ src/muscle/pwpath.h \ src/muscle/muscle_context.h \ src/muscle/estring.h \ src/muscle/scorehistory.h \ src/MuscleConstants.h \ src/muscle/objscore.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/refinehorizP.o src/refinehorizP.cpp _tmp/obj/release/refinevertP.o: src/refinevertP.cpp src/MuscleParallel.h \ src/MuscleTask.h \ ../../include/U2Algorithm/MsaUtilTasks.h \ ../../corelibs/U2Algorithm/src/util_msaedit/MsaUtilTasks.h \ ../../include/U2Core/global.h \ ../../corelibs/U2Core/src/globals/global.h \ ../../include/U2Core/U2IdTypes.h \ ../../corelibs/U2Core/src/datatype/U2IdTypes.h \ ../../include/U2Core/U2Identity.h \ ../../corelibs/U2Core/src/datatype/U2Identity.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleSequenceAlignmentObject.h \ ../../include/U2Core/MultipleAlignmentObject.h \ ../../corelibs/U2Core/src/gobjects/MultipleAlignmentObject.h \ ../../include/U2Core/GObject.h \ ../../corelibs/U2Core/src/models/GObject.h \ ../../corelibs/U2Core/src/models/StateLockableDataModel.h \ ../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/MaModificationInfo.h \ ../../corelibs/U2Core/src/util/MaModificationInfo.h \ ../../include/U2Core/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNASequence.h \ ../../corelibs/U2Core/src/datatype/DNAInfo.h \ ../../corelibs/U2Core/src/datatype/DNAQuality.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ ../../include/U2Core/U2Msa.h \ ../../corelibs/U2Core/src/datatype/U2Msa.h \ ../../include/U2Core/U2Alphabet.h \ ../../corelibs/U2Core/src/datatype/U2Alphabet.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignmentRow.h \ ../../include/U2Core/SaveDocumentTask.h \ ../../corelibs/U2Core/src/tasks/SaveDocumentTask.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2Mod.h \ ../../corelibs/U2Core/src/datatype/U2Mod.h \ ../../include/U2Core/DbiConnection.h \ ../../corelibs/U2Core/src/dbi/DbiConnection.h \ ../../include/U2Core/DNAAlphabet.h \ ../../corelibs/U2Core/src/datatype/DNAAlphabet.h \ ../../include/U2Core/GAutoDeleteList.h \ ../../corelibs/U2Core/src/util/GAutoDeleteList.h \ src/MuscleWorkPool.h \ src/MuscleUtils.h \ src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/seqvect.h \ src/muscle/seq.h \ src/muscle/distfunc.h \ src/muscle/msa.h \ src/muscle/tree.h \ src/muscle/profile.h \ src/muscle/pwpath.h \ src/muscle/muscle_context.h \ src/muscle/estring.h \ src/muscle/scorehistory.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/refinevertP.o src/refinevertP.cpp _tmp/obj/release/TaskLocalStorage.o: src/TaskLocalStorage.cpp src/TaskLocalStorage.h \ src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/objscore.h \ src/muscle/profile.h \ src/muscle/msa.h \ src/muscle/pwpath.h \ src/muscle/enumopts.h \ src/muscle/muscle_context.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/TaskLocalStorage.o src/TaskLocalStorage.cpp _tmp/obj/release/aligngivenpath.o: src/muscle/aligngivenpath.cpp src/muscle/muscle.h \ src/muscle/types.h \ 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src/muscle/muscle_context.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/profilefrommsa.o src/muscle/profilefrommsa.cpp _tmp/obj/release/progalign.o: src/muscle/progalign.cpp src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/tree.h \ src/muscle/seqvect.h \ src/muscle/seq.h \ src/muscle/profile.h \ src/muscle/msa.h \ src/muscle/pwpath.h \ src/muscle/distfunc.h \ src/muscle/textfile.h \ src/muscle/estring.h \ src/muscle/muscle_context.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/progalign.o src/muscle/progalign.cpp _tmp/obj/release/progress.o: src/muscle/progress.cpp src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/muscle_context.h \ src/muscle/profile.h \ src/muscle/msa.h \ src/muscle/pwpath.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/progress.o src/muscle/progress.cpp 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src/muscle/tree.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/threewaywt.o src/muscle/threewaywt.cpp _tmp/obj/release/tomhydro.o: src/muscle/tomhydro.cpp src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/profile.h \ src/muscle/msa.h \ src/muscle/pwpath.h \ src/muscle/muscle_context.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/tomhydro.o src/muscle/tomhydro.cpp _tmp/obj/release/traceback.o: src/muscle/traceback.cpp src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ src/muscle/alpha.h \ src/muscle/params.h \ src/muscle/profile.h \ src/muscle/msa.h \ src/muscle/pwpath.h \ src/muscle/muscle_context.h $(CXX) -c $(CXXFLAGS) $(INCPATH) -o _tmp/obj/release/traceback.o src/muscle/traceback.cpp _tmp/obj/release/tracebackopt.o: src/muscle/tracebackopt.cpp src/muscle/muscle.h \ src/muscle/types.h \ src/muscle/enums.h \ src/muscle/intmath.h \ 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../../corelibs/U2Core/src/models/GObjectReference.h \ ../../include/U2Core/GObjectRelationRoles.h \ ../../corelibs/U2Core/src/gobjects/GObjectRelationRoles.h \ ../../include/U2Core/U2Type.h \ ../../corelibs/U2Core/src/datatype/U2Type.h \ ../../include/U2Core/U2Region.h \ ../../corelibs/U2Core/src/datatype/U2Region.h \ ../../include/U2Core/DocumentModel.h \ ../../corelibs/U2Core/src/models/DocumentModel.h \ ../../include/U2Core/GUrl.h \ ../../corelibs/U2Core/src/globals/GUrl.h \ ../../include/U2Core/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/UnloadedObject.h \ ../../corelibs/U2Core/src/gobjects/GObjectTypes.h \ ../../include/U2Core/U2FormatCheckResult.h \ ../../corelibs/U2Core/src/dbi/U2FormatCheckResult.h \ ../../include/U2Core/GObjectTypes.h \ ../../include/U2Core/IOAdapter.h \ ../../corelibs/U2Core/src/io/IOAdapter.h \ ../../include/U2Core/IOAdapterUtils.h \ ../../corelibs/U2Core/src/util/IOAdapterUtils.h \ ../../include/U2Core/LoadDocumentTask.h \ ../../corelibs/U2Core/src/tasks/LoadDocumentTask.h \ ../../include/U2Core/GObjectReference.h \ ../../include/U2Core/DocumentProviderTask.h \ ../../corelibs/U2Core/src/tasks/DocumentProviderTask.h \ ../../include/U2Core/Task.h \ ../../corelibs/U2Core/src/globals/Task.h \ ../../include/U2Core/Log.h \ ../../corelibs/U2Core/src/globals/Log.h \ ../../include/U2Core/U2OpStatus.h \ ../../corelibs/U2Core/src/globals/U2OpStatus.h \ ../../include/U2Core/MultipleSequenceAlignmentImporter.h \ ../../corelibs/U2Core/src/util/MultipleSequenceAlignmentImporter.h \ ../../include/U2Core/MultipleSequenceAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleSequenceAlignment.h \ ../../include/U2Core/U2SafePoints.h \ ../../corelibs/U2Core/src/globals/U2SafePoints.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignment.h \ ../../corelibs/U2Core/src/datatype/msa/MultipleAlignmentRow.h \ ../../include/U2Core/MsaRowUtils.h \ ../../corelibs/U2Core/src/util/MsaRowUtils.h \ 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