Category	Program	Package	File	URL	Interface
Sequence Entry	gde	GDE	$doc/GDE/GDE2.2_manual.ps	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/GDE/GDE2.2_manual.ps	GDE
Sequence Entry	sequin	NCBI	$doc/entrez/sequin.htm	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/entrez/sequin.htm	gui
Sequence Entry	TraceView	EBI	$doc/EBI/trace_viewer_paper.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/EBI/trace_viewer_paper.html	command
Sequence Entry	CAP2	GDE	$doc/GDE/CAP2.help	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/GDE/CAP2.help	command
Sequence Display	numseq	FSAP	$doc/fsap/numseq.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/numseq.asc	interactive
Translation	numseq	FSAP	$doc/fsap/numseq.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/numseq.asc	interactive
Translation	ribosome	XYLEM	$doc/xylem/ribosome.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/ribosome.asc	command
Translation	prot2nuc	XYLEM	$doc/xylem/prot2nuc.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/prot2nuc.asc	command
Sequence reformatting	readseq	READSEQ	$doc/readseq/readseq.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/readseq/readseq.asc	both
Sequence reformatting	readseq	READSEQ	$doc/readseq/readseq-help.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/readseq/readseq-help.html	both
Sequence reformatting	readseq	READSEQ	$doc/readseq/Readseq2-help.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/readseq/Readseq2-help.html	both
Sequence reformatting	fromgb	FASTA	$doc/fasta/format.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/format.asc	interactive
Sequence reformatting	funnel	FSAP	$doc/fsap/funnel.as	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/funnel.asc	interactive
Sequence reformatting	numseq	FSAP	$doc/fsap/numseq.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/numseq.asc	interactive
Sequence reformatting	clu2ig	XYLEM	$doc/clustalw/clu2ig.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/clustalw/clu2ig.asc	command
Restriction analysis	Intrest	FSAP	$doc/fsap/rest.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/rest.asc	interactive
Restriction analysis	bachrest	FSAP	$doc/fsap/rest.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/rest.asc	interactive
Restriction analysis	digest	FSAP	$doc/fsap/digest.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/digest.asc	interactive
Restriction analysis	gel	FSAP	$doc/fsap/gel.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/gel.asc	interactive
Restriction analysis	tacg	TACG	$doc/tacg/tacg.main.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/tacg/tacg.main.html	command
Restriction analysis	CloneIt	LINDENBAUM	$doc/cloneit.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/cloneit.html	both
Electrophoresis	gel	FSAP	$doc/fsap/gel.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/gel.asc	interactive
Electrophoresis	dui	DNA-GUI	$doc/DNA-GUI/dnagui_ug.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/DNA-GUI/dnagui_ug.html	interactive
Electrophoresis	dui	DNA-GUI	$doc/DNA-GUI/guide.ps	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/DNA-GUI/guide.ps	interactive
Protein	prostat	FSAP	$doc/fsap/prostat.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/prostat.asc	interactive
Protein	garnier	FASTA	$doc/fasta/fasta.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta.asc	interactive
Protein	grease	FASTA	$doc/fasta/fasta.as	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta.asc	interactive
Protein	Cn3D	NCBI	http://www.ncbi.nlm.nih.gov/Structure/cn3d.html		interactive
Similarity	p1hom	FSAP	$doc/fsap/hom.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/hom.asc	interactive
Similarity	p2hom	FSAP	$doc/fsap/hom.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/hom.asc	interactive
Similarity	d3hom	FSAP	$doc/fsap/hom.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/hom.asc	interactive
Similarity	d4hom	FSAP	$doc/fsap/hom.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/hom.asc	interactive
Similarity	align	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	
Similarity	bestscor	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	
Similarity	fasta	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	both
Similarity	lalign	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	both	
Similarity	lfasta	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	both
Similarity	tfasta	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	both	
Similarity	prdf	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	both	
Similarity	prss	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	both	
Similarity	relate	FASTA	$doc/fasta/fasta20.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta20.asc	interactive
ORF Analysis	gcua	GCUA	$doc/gcua/codon.hlp	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/gcua/codon.hlp	interactive
ORF Analysis	testcode	FSAP	$doc/fsap/testcode.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fsap/testcode.asc	interactive
alignment	clustalw	CLUSTAL	$doc/clustalw/clustalw.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/clustalw/clustalw.asc	interactive
alignment		CLUSTAL	http://www-igbmc.u-strasbg.fr/BioInfo/ClustalW/		Web
alignment	clustalx	CLUSTAL	$doc/clustalx/clustalx.htm	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/clustalx/clustalx.html	interactive
alignment	reform	XYLEM	$doc/xylem/reform.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/reform.asc	command
alignment	Jalview	MCLAMP	$doc/jalview/help.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/jalview/help.html	command
alignment	boxshade	ISREC	$doc/boxshade.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/boxshade.asc	both
alignment	clu2ig	XYLEM	$doc/clustalw/clu2ig.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/clustalw/clu2ig.asc	command
alignment	mrtrans	FASTA	$doc/fasta/mrtrans.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/mrtrans.asc	command
alignment	tcoffee	TCOFFEE	$doc/tcoffee/t_coffee_doc.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/tcoffee/t_coffee_doc.html	command
alignment	tcoffee	TCOFFEE	$doc/tcoffee/t_coffee_doc.pdf	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/tcoffee/t_coffee_doc.pdf	command
Oligonucleotides	primer3	PRIMER3	$doc/primer/manual.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/primer/manual.asc	
Oligonucleotides	primer3	PRIMER3	$doc/primer/primer3.html	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/primer/primer3.html	both
Oligonucleotides	primer3	PRIMER3	$doc/primer/primer3.ps	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/primer/primer3.ps	command	
Oligonucleotides	primer3	PRIMER3	$doc/primer/example	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/primer/example	command	
Oligonucleotides	osp	OSP	$doc/osp/INSTR.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/osp/INSTR.asc	interactive
Oligonucleotides	ospX	OSP	$doc/osp/INSTR.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/osp/INSTR.asc	gui
Oligonucleotides	MWCalculator	MWC	http://www-classes.cs.uchicago.edu/~gluc/MWC/MWC.html	http://www-classes.cs.uchicago.edu/%7Egluc/MWC/MWC.html	
Database	findkey	XYLEM	$doc/xylem/findkey.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/findkey.asc	interactive
Database	xylem_identify	XYLEM	$doc/xylem/identify.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/identify.asc	command
Database	entrez	NCBI	$doc/entrez/entrzdoc.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/entrez/entrzdoc.txt	gui
Database	nclever	OGMP	$doc/nclever/nclever_manual.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/nclever/nclever_manual.txt	command
Database	fetch	XYLEM	$doc/xylem/fetch.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/fetch.asc	both
Database	entrez	NCBI	$doc/entrez/entrzdoc.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/entrez/entrzdoc.txt	gui
Database	nclever	OGMP	$doc/nclever/nclever_manual.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/nclever/nclever_manual.txt	command
Database	ssearch	FASTA	$doc/fasta/fasta.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta.asc	both
Database	fasta	FASTA	$doc/fasta/fasta.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta.asc	both
Database	fastx	FASTA	$doc/fasta/fasta.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta.asc	both
Database	fasty	FASTA	$doc/fasta/fasta.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta.asc	both
Database	tfasta	FASTA	$doc/fasta/fasta.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta.asc	both
Database		FASTA	$doc/fasta/fasta3x.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/fasta/fasta3x.asc	
Database		FASTA	http://www.people.virginia.edu/~wrp/	http://www.people.virginia.edu/%7Ewrp/	both	
Database	dsearch	XYLEM	$doc/xylem/search.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/search.asc	command
Database	search	XYLEM	$doc/xylem/search.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/search.asc	command
Database	features	XYLEM	$doc/xylem/features.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/features.asc	both
Database	splitdb	XYLEM	$doc/xylem/splitdb.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/splitdb.asc	command
Database	getloc	XYLEM	$doc/xylem/getloc.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/getloc.asc	command
Database	getob	XYLEM	$doc/xylem/getob.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/getob.asc	command
Database	ribosome	XYLEM	$doc/xylem/ribosome.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/ribosome.asc	command
Database	shuffle	XYLEM	$doc/xylem/shuffle.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/shuffle.asc	command
Database	randseq	FASTA			command
Database	dbstat	XYLEM	$doc/xylem/dbstat.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/xylem/dbstat.asc	command
Pattern Discovery and Matching	dynamic	MBCRR	$doc/MBCRR/dynamic/Dynamic.man	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/MBCRR/dynamic/Dynamic.man	interactive
Pattern Discovery and Matching	dyn-glean	MBCRR	$doc/MBCRR/dynamic/Dynamic.man	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/MBCRR/dynamic/Dynamic.man	interactive
Pattern Discovery and Matching	gp	GENEPARSER	$doc/geneparser/GeneParser.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/geneparser/GeneParser.asc	command
Pattern Discovery and Matching	xland	XLANDSCAPE	$doc/XLandscape/readme.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/XLandscape/readme.txt	command
Pattern Discovery and Matching	consensus	CONSENSUS	$doc/Consensus/consensus.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Consensus/consensus.asc	command
Pattern Discovery and Matching	wconsensus	CONSENSUS	$doc/Consensus/wconsensus.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Consensus/wconsensus.asc	command
Pattern Discovery and Matching	patser	CONSENSUS	$doc/Consensus/patser.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Consensus/patser.asc	command
Pattern Discovery and Matching	gmat-inf-gc	CONSENSUS	$doc/Consensus/gmat-inf-gc.asc	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Consensus/gmat-inf-gc.asc	command
Phylogeny	treetool	TREETOOL	$doc/treetool.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/treetool.txt	
Phylogeny	phylo_win	PHYLO_WIN			
Phylogeny		PHYLIP	$doc/Phylip/main.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/main.txt	
Phylogeny		PHYLIP	http://evolution.genetics.washington.edu/phylip.html		
Phylogeny	protpars	PHYLIP	$doc/Phylip/protpars.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/protpars.txt	interactive
Phylogeny	dnapars	PHYLIP	$doc/Phylip/dnapars.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnapars.txt	interactive
Phylogeny	dnamove	PHYLIP	$doc/Phylip/dnamove.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnamove.txt	interactive
Phylogeny	dnapenny	PHYLIP	$doc/Phylip/dnapenny.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnapenny.txt	interactive
Phylogeny	dnaboot	PHYLIP	$doc/Phylip/dnaboot.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnaboot.txt	interactive
Phylogeny	dnacomp	PHYLIP	$doc/Phylip/dnacomp.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnacomp.txt	interactive
Phylogeny	dnainvar	PHYLIP	$doc/Phylip/dnainvar.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnainvar.txt	interactive
Phylogeny	dnaml	PHYLIP	$doc/Phylip/dnaml.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnaml.txt	interactive
Phylogeny	fastDNAml	FASTDNAML	$doc/Phylip/fastDNAml/fastDNAml_doc.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/fastDNAml/fastDNAml_doc.txt	command
Phylogeny	dnamlk	PHYLIP	$doc/Phylip/dnamlk.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnamlk.txt	interactive
Phylogeny	dnadist	PHYLIP	$doc/Phylip/dnadist.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dnadist.txt	interactive
Phylogeny	protdist	PHYLIP	$doc/Phylip/protdist.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/progdist.txt	interactive
Phylogeny	seqboot	PHYLIP	$doc/Phylip/seqboot.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/seqboot.txt	interactive
Phylogeny	phylo_win	PHYLO_WIN	http://pbil.univ-lyon1.fr/software/phylowin.html		gui
Phylogeny		PHYLIP	$doc/Phylip/distance.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/distance.txt	
Phylogeny	fitch	PHYLIP	$doc/Phylip/fitch.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/fitch.txt	interactive
Phylogeny	kitsch	PHYLIP	$doc/Phylip/kitsch.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/kitsch.txt	interactive
Phylogeny	neighbor	PHYLIP	$doc/Phylip/neighbor.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/neighbor.txt	interactive
Phylogeny		PHYLIP	$doc/Phylip/contchar.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/contchar.txt	
Phylogeny	contml	PHYLIP	$doc/Phylip/contml.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/contml.txt	interactive
Phylogeny	contrast	PHYLIP	$doc/Phylip/contrast.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/contrast.txt	interactive
Phylogeny	gendist	PHYLIP	$doc/Phylip/gendist.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/gendist.txt	interactive
Phylogeny		PHYLIP	$doc/Phylip/discrete.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/discrete.txt	
Phylogeny	restml	PHYLIP	$doc/Phylip/restml.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/restml.txt	interactive
Phylogeny	restdist	PHYLIP	$doc/Phylip/restdist.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/restdist.txt	interactive
Phylogeny	mix	PHYLIP	$doc/Phylip/mix.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/mix.txt	interactive
Phylogeny	move	PHYLIP	$doc/Phylip/move.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/move.txt	interactive
Phylogeny	penny	PHYLIP	$doc/Phylip/penny.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/penny.txt	interactive
Phylogeny	boot	PHYLIP	$doc/Phylip/boot.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/boot.txt	interactive
Phylogeny	dollop	PHYLIP	$doc/Phylip/dollop.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dollop.txt	interactive
Phylogeny	dolmove	PHYLIP	$doc/Phylip/dolmove.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dolmove.txt	interactive
Phylogeny	dolpenny	PHYLIP	$doc/Phylip/dolpenny.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/dolpenny.txt	interactive
Phylogeny	dosboot	PHYLIP	$doc/Phylip/dolboot.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/	interactive
Phylogeny	clique	PHYLIP	$doc/Phylip/clique.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/clique.txt	interactive
Phylogeny	factor	PHYLIP	$doc/Phylip/factor.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/factor.txt	interactive
Phylogeny		PHYLIP	$doc/Phylip/draw.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/draw.txt	
Phylogeny	drawgram	PHYLIP	$doc/Phylip/drawgram.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/drawgram.txt	interactive
Phylogeny	drawtree	PHYLIP	$doc/Phylip/drawtree.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/drawtree.txt	interactive
Phylogeny	consense	PHYLIP	$doc/Phylip/consense.txt	http://www.umanitoba.ca/afs/plant_science/psgendb/doc/Phylip/consense.txt	interactive