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\caption{All statistics are based on contigs of size $\geq$ 500 bp, unless otherwise noted (e.g., "\# contigs ($\geq$ 0 bp)" and "Total length ($\geq$ 0 bp)" include all contigs).}
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Assembly & \# contigs ($\geq$ 0 bp) & \# contigs ($\geq$ 1000 bp) & \# contigs ($\geq$ 5000 bp) & \# contigs ($\geq$ 10000 bp) & \# contigs ($\geq$ 25000 bp) & \# contigs ($\geq$ 50000 bp) & Total length ($\geq$ 0 bp) & Total length ($\geq$ 1000 bp) & Total length ($\geq$ 5000 bp) & Total length ($\geq$ 10000 bp) & Total length ($\geq$ 25000 bp) & Total length ($\geq$ 50000 bp) & \# contigs & Largest contig & Total length & Reference length & N50 & N90 & auN & L50 & L90 & \# misassemblies & \# misassembled contigs & Misassembled contigs length & \# local misassemblies & \# scaffold gap ext. mis. & \# scaffold gap loc. mis. & \# unaligned mis. contigs & \# unaligned contigs & Unaligned length & Genome fraction (\%) & Duplication ratio & \# N's per 100 kbp & \# mismatches per 100 kbp & \# indels per 100 kbp & Largest alignment & Total aligned length & NA50 & NA90 & auNA & LA50 & LA90 \\ \hline
meta\_contigs\_1 & 45 & 12 & 5 & 5 & 3 & 1 & 186593 & 173575 & 160170 & 160170 & 131533 & 55106 & 20 & 55106 & 180190 & 179997 & 48458 & 3898 & 36838.5 & 2 & 6 & 2 & 2 & 49610 & 0 & 1 & 0 & 0 & 2 + 0 part & 2730 & 95.608 & 1.031 & 18.87 & 44.53 & 3.38 & 55106 & 177407 & 37178 & 3898 & 32158.8 & 2 & 7 \\ \hline
meta\_contigs\_2 & 32 & 7 & 6 & 5 & 3 & 1 & 177895 & 168101 & 164654 & 157666 & 131139 & 54221 & 13 & 54221 & 172703 & 179997 & 49658 & 10428 & 38106.6 & 2 & 5 & 4 & 2 & 54984 & 0 & 0 & 0 & 0 & 1 + 0 part & 885 & 95.537 & 1.004 & 0.00 & 33.17 & 0.00 & 49658 & 171818 & 27260 & 10428 & 30524.4 & 3 & 6 \\ \hline
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