/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2017 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#include "PairAlignSequences.h"

namespace U2 {

void PairAlignSequences::setValues(int _score, const U2Region & _refSubseqInterval, const U2Region & _ptrnSubseqInterval, QByteArray _pairAlignment) {
    score = _score;
    refSubseqInterval = _refSubseqInterval;
    ptrnSubseqInterval = _ptrnSubseqInterval;
    pairAlignment = _pairAlignment;
}


PairAlignSequences::PairAlignSequences() {
    score = 0;
    isDNAComplemented = false;
    isAminoTranslated = false;
}

}//namespace