Table 1. Codes for --dblist
|
Code
|
Description
|
| nt |
Non-redundant nucleotide |
| refseqgene |
RefSeq Gene |
| refseq_rna |
RefSeq RNA |
| human_genomic |
Human Genomic - RefSeq Human
chromosomal |
| refseq_genomic |
RefSeq Genomic |
| human_genomic_transcript |
Human Genomic plus
Transcripts |
| mouse_genomic_transcript |
Mouse Genomic plus
Transcripts |
| Representative_Genomes |
Representative Genomes |
| other_genomic |
Other Genomic - RefSeq
non-human chromosomal seqs |
| vector |
Vector |
| patnt |
Patented Nucleotide |
| pdbnt |
Nucleotide sequences from PDB
3D nucl. acid structures |
| 16SMicrobial |
16S Microbial |
| nr |
Non-redundant protein |
| refseq_protein |
RefSeq Protein |
| swissprot |
Uniprot |
| pataa |
Patented Protein |
| pdbaa |
Protein sequences from PDB 3D
protein structures |
| cdd_delta |
Conserved Domain Database for
DeltaBlast |
| env_nt |
Environmental - Nucleotide |
| env_nr |
Environmental - Protein |
| est |
Expressed Sequence Tags |
| est_human |
Expressed Sequence Tags -
Human |
| est_mouse |
Expressed Sequence Tags -
Mouse |
| est_others |
Expressed Sequence Tags -
Other |
| sts |
Sequence-Tagged Sites |
| gss |
Genome Survey Sequences |
| gss_annot |
Genome Survey Sequences -
Annotation |
| htgs |
High Throughput Genomic
Sequencing |
| tsa_nt |
Transcriptome Shotgun
Assembly nucleotide |
| wgs |
Whole Genome Sequencing |
| taxdb |
Taxonomy |