Index of /~birch/doc/local/pkg/ugene-1.29.0/src/include/U2Algorithm

	Name	Last modified	Size	Description
	Parent Directory		-
	DynTable.h	2017-12-28 01:12	58
	SyncSort.h	2017-12-28 01:12	58
	BitsTable.h	2017-12-28 01:12	59
	EnzymeModel.h	2017-12-28 01:12	61
	RollingArray.h	2017-12-28 01:12	62
	FindAlgorithm.h	2017-12-28 01:12	63
	ORFFinder.h	2017-12-28 01:12	63
	RollingMatrix.h	2017-12-28 01:12	63
	BinaryFindOpenCL.h	2017-12-28 01:12	66
	MSAAlignTask.h	2017-12-28 01:12	66
	FindAlgorithmTask.h	2017-12-28 01:12	67
	SArrayIndex.h	2017-12-28 01:12	68
	CDSearchTaskFactory.h	2017-12-28 01:12	69
	CudaGpuRegistry.h	2017-12-28 01:12	69
	DnaAssemblyTask.h	2017-12-28 01:12	69
	DnaAssemblyMultiTask.h	2017-12-28 01:12	70
	MsaUtilTasks.h	2017-12-28 01:12	70
	ORFAlgorithmTask.h	2017-12-28 01:12	70
	PhyTreeGenerator.h	2017-12-28 01:12	70
	RepeatFinderSettings.h	2017-12-28 01:12	70
	cl.h	2017-12-28 01:12	70
	OpenCLGpuRegistry.h	2017-12-28 01:12	71
	GenomeAssemblyMultiTask.h	2017-12-28 01:12	73
	GeomUtils.h	2017-12-28 01:12	73
	MSAAlignAlgRegistry.h	2017-12-28 01:12	73
	NWAligner.h	2017-12-28 01:12	73
	OpenCLHelper.h	2017-12-28 01:12	73
	RepeatFinderTaskFactory.h	2017-12-28 01:12	73
	SubstMatrixRegistry.h	2017-12-28 01:12	73
	OpenCLUtils.h	2017-12-28 01:12	74
	PhyTreeGeneratorTask.h	2017-12-28 01:12	74
	SecStructPredictTask.h	2017-12-28 01:12	74
	SplicedAlignmentTask.h	2017-12-28 01:12	74
	CreatePhyTreeSettings.h	2017-12-28 01:12	75
	SequenceContentFilterTask.h	2017-12-28 01:12	75
	DnaAssemblyAlgRegistry.h	2017-12-28 01:12	76
	GenomeAssemblyRegistry.h	2017-12-28 01:12	76
	SArrayBasedFindTask.h	2017-12-28 01:12	76
	SmithWatermanUtil.h	2017-12-28 01:12	77
	PhyTreeGeneratorRegistry.h	2017-12-28 01:12	78
	SArrayIndexSerializer.h	2017-12-28 01:12	78
	PairwiseAligner.h	2017-12-28 01:12	79
	SmithWatermanResult.h	2017-12-28 01:12	79
	cl_platform.h	2017-12-28 01:12	79
	CreateSubalignmentTask.h	2017-12-28 01:12	80
	MolecularSurface.h	2017-12-28 01:12	80
	AbstractAlignmentTask.h	2017-12-28 01:12	81
	AlignmentAlgorithmsRegistry.h	2017-12-28 01:12	81
	CDSearchTaskFactoryRegistry.h	2017-12-28 01:12	81
	MSAConsensusUtils.h	2017-12-28 01:12	81
	SecStructPredictAlgRegistry.h	2017-12-28 01:12	81
	SmithWatermanSettings.h	2017-12-28 01:12	81
	SWResultFilterRegistry.h	2017-12-28 01:12	82
	SplicedAlignmentTaskRegistry.h	2017-12-28 01:12	82
	VanDerWaalsSurface.h	2017-12-28 01:12	82
	MSADistanceAlgorithm.h	2017-12-28 01:12	83
	SimpleAddingToAlignment.h	2017-12-28 01:12	83
	SmithWatermanTaskFactory.h	2017-12-28 01:12	84
	BaseAlignmentAlgorithmsIds.h	2017-12-28 01:12	85
	MSAConsensusAlgorithm.h	2017-12-28 01:12	85
	PairwiseAlignmentTask.h	2017-12-28 01:12	85
	RepeatFinderTaskFactoryRegistry.h	2017-12-28 01:12	85
	MsaColorScheme.h	2017-12-28 01:12	86
	PWMConversionAlgorithm.h	2017-12-28 01:12	86
	SmithWatermanResultFilters.h	2017-12-28 01:12	86
	SmithWatermanReportCallback.h	2017-12-28 01:12	87
	BuiltInDistanceAlgorithms.h	2017-12-28 01:12	88
	ColorSchemeUtils.h	2017-12-28 01:12	88
	PWMConversionAlgorithmBVH.h	2017-12-28 01:12	89
	PWMConversionAlgorithmLOD.h	2017-12-28 01:12	89
	PWMConversionAlgorithmMCH.h	2017-12-28 01:12	89
	PWMConversionAlgorithmNLG.h	2017-12-28 01:12	89
	BuiltInConsensusAlgorithms.h	2017-12-28 01:12	90
	MSADistanceAlgorithmHamming.h	2017-12-28 01:12	90
	MSAConsensusAlgorithmStrict.h	2017-12-28 01:12	91
	MSADistanceAlgorithmRegistry.h	2017-12-28 01:12	91
	MSAConsensusAlgorithmClustal.h	2017-12-28 01:12	92
	MSAConsensusAlgorithmDefault.h	2017-12-28 01:12	92
	SmithWatermanTaskFactoryRegistry.h	2017-12-28 01:12	92
	MSAConsensusAlgorithmLevitsky.h	2017-12-28 01:12	93
	MSAConsensusAlgorithmRegistry.h	2017-12-28 01:12	93
	SWMulAlignResultNamesTagsRegistry.h	2017-12-28 01:12	93
	BuiltInPWMConversionAlgorithms.h	2017-12-28 01:12	94
	PWMConversionAlgorithmRegistry.h	2017-12-28 01:12	94
	StructuralAlignmentAlgorithm.h	2017-12-28 01:12	94
	AssemblyConsensusAlgorithm.h	2017-12-28 01:12	95
	MolecularSurfaceFactoryRegistry.h	2017-12-28 01:12	95
	AlignSequencesToAlignmentTaskSettings.h	2017-12-28 01:12	97
	MSADistanceAlgorithmHammingRevCompl.h	2017-12-28 01:12	98
	MsaHighlightingScheme.h	2017-12-28 01:12	100
	StructuralAlignmentAlgorithmFactory.h	2017-12-28 01:12	101
	StructuralAlignmentAlgorithmRegistry.h	2017-12-28 01:12	102
	AssemblyConsensusAlgorithmRegistry.h	2017-12-28 01:12	103
	BuiltInAssemblyConsensusAlgorithms.h	2017-12-28 01:12	103