KeySet : "xland.ace"
Text : "Object-oriented biological database engine"
Text : "DNA sequence annotation"
Text : "Multiple sequence alignment"
Text : "Create consensus patterns from unaligned sequences"
Text : "Sequence chromatogram viewer"
Text : "Pairwise and global similarity searches"
Text : "Maximum likelihood sequence phylogeny"
Text : "Programs and API for phylogeny"
Text : "Sequence analysis tools"
Text : "Codon usage analysis"
Text : "Genetic Data Environment"
Text : "Parse a DNA sequence into introns and exons"
Text : "Multiple alignment display"
Text : "Find subcloning strategies"
Text : "Mapping with molecular and phenotypic markers"
Text : "Multiple alignment viewer"
Text : "Oligonucleotide Molecular Weight Calculator"
Text : "Database tools - Natl. Ctr. for Biotech. Information"
Text : "Oligonucleotide design"
Text : "Package for Inferring Phylogenies"
Text : "Sequence format translator"
Text : "Restriction digest analysis"
Text : "Phylogenetic tree editor"
Text : "Create and manipulate database subsets"
Text : "Biological Research Computing Hierarchy"
Text : "Score markers from gel images"
Text : "A modular system for evolutionary analysis"
Text : "Visualization and annotation of genomic information"
Text : "weighted neighbor-joining"
Text : "TIGR Microarray programs"
Text : "Management and analysis of microarray data"
Text : "Bayesian inference of phylogeny"
Text : "Programmable graphic user interface"
Text : "Genome Canada Bioinformatics Help Desk - Software Repository"
Text : "User's Guide"
Text : "Data Preparation Guide"
Text : "Main Phylip documentation file"
Text : "Continuous character programs"
Text : "Discrete (0,1) character programs"
Text : "Distance matrix programs"
Text : "Tree drawing programs"
Text : "Sequence phylogeny programs"
Text : "User's Guide (PostScript)"
Text : "Documentation"
Text : "Manual"
Text : "REBASE TypeII restriction enzymes"
Text : "Tutorial"
Text : "Tutorial commands for mouse data"
Text : "Initilization file for mouse data"
Text : "Mouse F2 - 308 markers, 46 progeny"
Text : "Tutorial commands from sample data"
Text : "Sample F2 data"
Text : "Tutorial - Known bugs"
Text : "Overview of menus"
Text : "Tutorial - Long running jobs"
Text : "List of Tutorials"
Text : "User's Guide (PDF)"
Text : "Overall structure of fasta programs"
Text : "FASTA2 Package User's Guide"
Text : "FASTA3 Package User's Guide"
Text : "File format specification"
Text : "FASTA Web Site"
Text : "Demo data directory"
Text : "Examples"
Text : "User's Guide (HTML)"
Text : "Bluejay for the Impatient"
Text : "Home Page"
Text : "Tutorial - New BIRCH installation"
Text : "Tutorial - Update BIRCH"
Text : "Tutorial - Uninstall BIRCH"
Text : "Local settings for installing BIRCH"
Text : "Tutorial - Adding locally-installed scripts and binaries"
Text : "ACeDB Web site"
Text : "Quick reference for editing database objects"
Text : "ACeDB Feature Overview"
Text : "Schema"
Text : "Tutorial - Making documentation web-accessible"
Text : "GDE overview"
Text : "Manual page (man\/nroff)"
Text : "Manual page (PostScript)"
Text : "Manual Page (text)"
Text : "Weighbor web site"
Text : "Sample GenePix file"
Text : "TIGR TM4 Web site"
Text : "Graz University - Inst. for Genomics and Bioinformatics"
Text : "MAGIC Web site"
Text : "STEM web site"
Text : "Release Notes"
Text : "Sample data directory"
Text : "Command reference (PDF)"
Text : "MrBayes Web site"
Text : "Command reference (HTML)"
Text : "FASTA paper"
Text : "Overview"
Text : "Quick Guide"
Text : "Manual page"
Text : "Help"
Text : "License"
Text : "Web site"
Text : "Developers Web Site"
Text : "Online Help"
Text : "Help file"
Text : "Manual Page"
Text : "Online help"
Text : "User guides"
Text : "Jalview web site"
Text : "Reference Manual"
Text : "Publication"
Text : "Primer3 Web site"
Text : "Graphic interface to ACeDB"
Text : "text interface to ACeDB"
Text : "Demonstration laboratory database"
Text : "DNA sequence annotation tool"
Text : "Multiple sequence alignment and editing"
Text : "Consensus patterns in unaligned sequences (user-defined pattern width)"
Text : "Consensus pattern in unaligned sequences (automatic pattern width)"
Text : "Score the match of a sequence with an alignment matrix"
Text : "Information content of an alignment matrix"
Text : "Protein secondary structure"
Text : "Protein hydrophobicity"
Text : "Pairwise global sequence alignment"
Text : "Calculate the score of a 100\% identical match"
Text : "Sequence database similarity"
Text : "Rigorous local pairwise alignment"
Text : "Statistical significance of database similarity"
Text : "Align DNA sequences to a protein multiple alignment"
Text : "Rigorous Smith-Waterman database similarity search"
Text : "Database similarity - allow frameshifts between codons"
Text : "Database similarity - Allow frameshifts within codons"
Text : "Randomize a set of sequences"
Text : "DNA maximum likelihood"
Text : "Draw and edit phylogenetic trees"
Text : "Sequence dislpay and manipulation"
Text : "Restriction site search"
Text : "Restriction site search (batch)"
Text : "Reformats a free-format or FASTA-format file to a fixed line-length, preserving comments that begin with a semicolon (\;)"
Text : "Calculates restriction sites, fragments and fragment ends for multiple enzyme digests, complete or partial"
Text : "Given migration distances for standards of know size, calculate sizes of unknown fragments"
Text : "Calculates amino acid frequencies for one or more proteins"
Text : "Dot-matrix protein similarity, k=1"
Text : "Dot-matrix protein similarity, k=2"
Text : "Dot-matrix DNA similarity, k=3"
Text : "Dot-matrix DNA similarity, k=4"
Text : "Find protein coding regions using method of Fickett"
Text : "General codon and amino acid usage analysis"
Text : "Contig assembly program"
Text : "Create genetic maps using marker and phenotype data"
Text : "Create maps for QTL data"
Text : "Calculate molecular weights for oligonucleotides"
Text : "Annotate and submit sequences to GenBank"
Text : "Protein 3D structure viewer"
Text : "run BLAST remotely at NCBI"
Text : "Oligonucleotide Search Program"
Text : "Oligonucleotide search program"
Text : "Protein parsimony"
Text : "DNA parsimony"
Text : "DNA parsimony with interactive tree rearrangement"
Text : "DNA parsimony using branch and bound method"
Text : "DNA phylogeny using compatability method"
Text : "DNA sequence phylogeny invariants"
Text : "DNA phylogeny using Maximum Likelihood"
Text : "DNA phylogeny using Maximum Likelihood (with evolutionary clock)"
Text : "Construct distance matrix for DNA sequences"
Text : "Construct distance matrix for protein sequences"
Text : "Create resampled datasets"
Text : "Distance trees - Fitch\/ Margoliash"
Text : "Distance trees - Fitch\/ Margoliash (molecular clock)"
Text : "Distance trees - Neighbor-Joining\/UPGMA"
Text : "Gene Frequencies and Continuous Characters Maximum Likelihood"
Text : "compute contrasts for comparative method"
Text : "Compute genetic distances from gene frequencies"
Text : "Maximum likelihood phylogeny for discrete data"
Text : "Compute distance matrices for discrete data"
Text : "Mixed method discrete character parsimony"
Text : "Interactive mixed-method parsimony"
Text : "Branch and bound parsimony for discrete data"
Text : "Discrete data parsimony method of DOLLO"
Text : "Interactive Dollo and Polymorphism Parsimony"
Text : "Branch and bound parsimony using Dollo and polymorphism methods"
Text : "Compatability method for two-state characters"
Text : "Generate discrete (0,1) characters from multistate characters"
Text : "Draw cladograms"
Text : "Draw radial trees"
Text : "Consensus trees"
Text : "Discrete character parsimony"
Text : "Calculate distance between trees"
Text : "Primer design and evaluation"
Text : "Convert sequence files to other formats"
Text : "Restriction and pattern mapping"
Text : "Parse features from GenBank flatfiles"
Text : "Keyword search on local flatfile database"
Text : "Translate nucleic acid to protein"
Text : "Reverse translate protein to degenerate DNA"
Text : "Translate multiply aligned sequences in clustal format to Intelligenetics format"
Text : "print a multiple alignment using plain text"
Text : "used by FINDKEY to extract LOCUS names from database hits"
Text : "retrieve entries from local flatfile database by name or accession number"
Text : "extract features from GenBank flatfile entries"
Text : "split a GenBank flatfile into a database containing annotation, sequence and index"
Text : "retrieve entries from a local flatfile database"
Text : "randomize sequences using a sliding window"
Text : "String substitution for HTML files"
Text : "Create BIRCH HTML documentation from BIRCH and local databases"
Text : "Create .GDEmenus files for all platforms"
Text : "modify paths in  BIRCH parameter files for local BIRCH system"
Text : "Uninstall a BIRCH system"
Text : "BIRCH documentation database"
Text : "Database for local documentation"
Text : "Print a text ruler for use in numbering columns"
Text : "GDE interface for leash"
Text : "Create ACeDB file objects for all documenataion files in a directory"
Text : "Create ACeDB file objects for all  data files in a directory"
Text : "Empty database to be used for local-installed documentation"
Text : "download and update GenBank flatfile database"
Text : "download and update PIR flatfile database"
Text : "create .fil files for use by FASTA"
Text : "Detect reticulate evolution by DNA compatability"
Text : "Launch a default browser from another application"
Text : "Genome visualization and annotation"
Text : "BIRCH install wizard"
Text : "Report statistics on BIRCH usage"
Text : "GDE interface for phylogenetic trees"
Text : "GDE interface for discrete state data (eg. molecular markers)"
Text : "weighted neighbor joining"
Text : "Convert microarray files to TIGR file formats"
Text : "Microarray Data Analysis System"
Text : "TIGR Multi-Experiment Viewer"
Text : "Normalize gene array data"
Text : "Print the contents of a file beginning at line x"
Text : "Convert a GDE flatfile into a Phylip discrete character file"
Text : "Convert a Phylip discrete character file into a GDE flatfile"
Text : "Convert molecular marker data from csv format to Phylip format"
Text : "compare a protein to a DNA database, calculating similarities with frameshifts"
Text : "compare unordered peptides to a protein database"
Text : "compare ordered peptides (or short DNA sequences) to a protein or DNA database"
Text : "compare unordered peptides to a translated DNA database"
Text : "compare mixed peptides to a protein database"
Text : "compare mixed peptides to a translated DNA database"
Text : "global alignment of two DNA or protein sequences"
Text : "global alignment of DNA or protein query sequence with local alignments of database sequences"
Text : "Extract a subset of sequences from a GDE flatfile"
Text : "segment-based multiple alignment"
Text : "reverse-complement, reverse or complement a DNA or RNA strand"
Text : "biolegato interface for DNA\/RNA sequence analysis"
Text : "bioLegato interface for discrete state data (eg. molecular markers)"
Text : "bioLegato interface for phylogenetic trees"
Text : "Create a consensus sequence from a multiple alignment"
Text : "Submits queries to NCBI Entrez"
Text : "Design oligonucleotide primers and probes"
Text : "Run web services using text data"
Text : "biolegato interface for protein sequence analysis"
Text : "biolegato interface for launching BIRCH programs"
Table : "Packages"
Table : "Categories"
Table : "Programs"
UserSession : "2010-08-08_09:52:54.1_psgendb"
Package : "ACeDB"
Package : "ARTEMIS"
Package : "CLUSTAL"
Package : "CONSENSUS"
Package : "DNA-GUI"
Package : "EBI"
Package : "FASTA"
Package : "FASTDNAML"
Package : "forester"
Package : "FSAP"
Package : "GCUA"
Package : "GDE"
Package : "GENEPARSER"
Package : "ISREC"
Package : "LINDENBAUM"
Package : "Mapmaker"
Package : "MCLAMP"
Package : "MWC"
Package : "NCBI"
Package : "OGMP"
Package : "OSP"
Package : "PHYLIP"
Package : "PHYLO_WIN"
Package : "PRIMER3"
Package : "READSEQ"
Package : "TACG"
Package : "TCOFFEE"
Package : "TREETOOL"
Package : "XLANDSCAPE"
Package : "XYLEM"
Package : "BIRCH"
Package : "RETICULATE"
Package : "genographer"
Package : "Mesquite"
Package : "Sensen"
Package : "weighbor"
Package : "TIGR-TM4"
Package : "GRAZ"
Package : "MrBayes"
Package : "bioLegato"
Package : "DIALIGN"
Package : "GCHelpDesk"
Category : "Database"
Category : "Sequence - Multiple Alignment"
Category : "Sequence - Pattern Discovery and Matching"
Category : "Sequence - Pairwise Similarity"
Category : "Sequence - Database Similarity Search"
Category : "Phylogeny"
Category : "Sequence - Phylogeny"
Category : "Sequence"
Category : "Sequence - Annotation and Gene Discovery"
Category : "Genetics"
Category : "Molecular Markers"
Category : "Sequence - Oligonucleotides"
Category : "Gene Expression"
Category : "Sequence - Protein"
Category : "Sequence - Protein Structure"
Category : "BIRCH - Administration"
Category : "Sequence - DNA Sequencing"
Category : "Sequence - File Formatting"
Category : "Sequence - Restriction Analysis"
Category : "Gel Electrophoresis"
Category : "Sequence - RNA Structure"
Category : "Utilities"
Category : "web services"
File : "$doc\/acedb\/acedb-man-0.pdf"
File : "http:\/\/www.acedb.org"
File : "$doc\/acedb\/howto\/howto.html"
File : "http:\/\/www.acedb.org\/Tutorial\/brief-tutorial.shtml"
File : "$doc\/fasta\/fasta20.txt"
File : "$doc\/fasta\/fasta3x.txt"
File : "$doc\/fasta\/format.txt"
File : "$doc\/fasta\/fasta.txt"
File : "http:\/\/www.people.virginia.edu\/\%7Ewrp\/pearson.html"
File : "http:\/\/people.virginia.edu\/~wrp\/papers\/mmol98f.pdf"
File : "$doc\/fasta\/fasta_versions.html"
File : "$doc\/fasta\/fasta.options.txt"
File : "$doc\/fasta\/fasta.defaults.txt"
File : "$doc\/fasta\/fasta_func.txt"
File : "$doc\/forester\/NHX.pdf"
File : "$doc\/bioLegato\/GDE2.2_manual.pdf"
File : "$doc\/bioLegato\/GDE2.2_manual.ps"
File : "$doc\/mapmaker\/DataPreparationGuide.txt"
File : "$doc\/Phylip\/main.html"
File : "$doc\/Phylip\/contchar.html"
File : "$doc\/Phylip\/discrete.html"
File : "$doc\/Phylip\/distance.html"
File : "$doc\/Phylip\/draw.html"
File : "$doc\/Phylip\/sequence.html"
File : "http:\/\/primer3.sourceforge.net\/"
File : "http:\/\/www.tcoffee.org"
File : "$doc\/tcoffee\/t_coffee.pdf"
File : "$doc\/RETICULATE\/reticulate.txt"
File : "http:\/\/www.visualgenomics.ca"
File : "http:\/\/www.t10.lanl.gov\/billb\/weighbor"
File : "http:\/\/www.tm4.org"
File : "http:\/\/genome.tugraz.at\/Software"
File : "http:\/\/mrbayes.csit.fsu.edu\/"
File : "http:\/\/home.cc.umanitoba.ca\/~frist\/bioLegato\/"
File : "http:\/\/dialign-tx.gobics.de\/"
File : "http:\/\/www.gchelpdesk.ualberta.ca\/repository\/"
File : "$doc\/fsap\/numseq.asc"
File : "$doc\/EBI\/trace_viewer_paper.html"
File : "$doc\/bioLegato\/CAP2.help"
File : "$doc\/fsap\/numseq.txt"
File : "$doc\/xylem\/ribosome.txt"
File : "$doc\/xylem\/prot2nuc.txt"
File : "$doc\/readseq\/readseq.txt"
File : "$doc\/readseq\/Readseq2-help.html"
File : "$doc\/clustalw\/clu2ig.txt"
File : "$doc\/fsap\/rest.txt"
File : "$doc\/fsap\/multidigest.txt"
File : "$doc\/fsap\/gel.txt"
File : "$doc\/tacg\/tacg.main.html"
File : "$doc\/cloneit.html"
File : "$doc\/fsap\/prostat.txt"
File : "http:\/\/www.ncbi.nlm.nih.gov\/Structure\/CN3D\/cn3d.shtml"
File : "$doc\/fsap\/hom.txt"
File : "$doc\/gcua\/codon.hlp"
File : "$doc\/fsap\/testcode.txt"
File : "$doc\/clustalw\/clustalw.asc"
File : "$doc\/clustalx\/clustalx.htm"
File : "$doc\/xylem\/reform.txt"
File : "$doc\/boxshade.asc"
File : "$doc\/fasta\/mrtrans.txt"
File : "$doc\/primer\/primer3.html"
File : "$doc\/primer\/primer3.ps"
File : "$doc\/primer\/example"
File : "$doc\/osp\/INSTR.asc"
File : "http:\/\/www-classes.cs.uchicago.edu\/~gluc\/MWC\/MWC.html"
File : "$doc\/xylem\/findkey.txt"
File : "$doc\/xylem\/identify.txt"
File : "$doc\/xylem\/fetch.txt"
File : "$doc\/xylem\/features.txt"
File : "$doc\/xylem\/splitdb.txt"
File : "$doc\/xylem\/getloc.txt"
File : "$doc\/xylem\/getob.txt"
File : "$doc\/xylem\/shuffle.txt"
File : "$doc\/xylem\/dbstat.txt"
File : "$doc\/geneparser\/GeneParser.asc"
File : "$doc\/Consensus\/consensus.asc"
File : "$doc\/Consensus\/wconsensus.asc"
File : "$doc\/Consensus\/patser.asc"
File : "$doc\/Consensus\/gmat-inf-gc.asc"
File : "$doc\/treetool\/treetool.txt"
File : "$doc\/fastDNAml\/fastDNAml_doc.txt"
File : "http:\/\/pbil.univ-lyon1.fr\/software\/phylowin.html"
File : "http:\/\/www-igbmc.u-strasbg.fr\/BioInfo\/ClustalW\/"
File : "http:\/\/www.people.virginia.edu\/~wrp\/"
File : "http:\/\/evolution.genetics.washington.edu\/phylip.html"
File : "$doc\/Phylip\/drawgram.html"
File : "$dat\/REBASE\/type2.lst"
File : "$doc\/fsap\/funnel.txt"
File : "$doc\/Phylip\/clique.html"
File : "$doc\/Phylip\/consense.html"
File : "$doc\/Phylip\/contml.html"
File : "$doc\/Phylip\/contrast.html"
File : "$doc\/Phylip\/dnacomp.html"
File : "$doc\/Phylip\/dnadist.html"
File : "$doc\/Phylip\/dnainvar.html"
File : "$doc\/Phylip\/dnaml.html"
File : "$doc\/Phylip\/dnamlk.html"
File : "$doc\/Phylip\/dnamove.html"
File : "$doc\/Phylip\/dnapars.html"
File : "$doc\/Phylip\/dnapenny.html"
File : "$doc\/Phylip\/dolboot.html"
File : "$doc\/Phylip\/dollop.html"
File : "$doc\/Phylip\/dolmove.html"
File : "$doc\/Phylip\/dolpenny.html"
File : "$doc\/Phylip\/drawtree.html"
File : "$doc\/Phylip\/factor.html"
File : "$doc\/Phylip\/fitch.html"
File : "$doc\/Phylip\/gendist.html"
File : "$doc\/Phylip\/kitsch.html"
File : "$doc\/Phylip\/mix.html"
File : "$doc\/Phylip\/move.html"
File : "$doc\/Phylip\/neighbor.html"
File : "$doc\/Phylip\/penny.html"
File : "$doc\/Phylip\/protdist.html"
File : "$doc\/Phylip\/protpars.html"
File : "$doc\/Phylip\/restdist.html"
File : "$doc\/Phylip\/restml.html"
File : "$doc\/Phylip\/seqboot.html"
File : "$doc\/forester\/atv_documentation.pdf"
File : "$doc\/mapmaker\/mapmaker.refguide.pdf"
File : "$doc\/mapmaker\/mapmaker.tutorial.pdf"
File : "$doc\/mapmaker\/mapmakerQTL.tutorial.pdf"
File : "$doc\/mapmaker\/mapmakerqtl.refguide.pdf"
File : "$doc\/mapmaker\/mapmaker.refguide.ps"
File : "$doc\/mapmaker\/mapmaker.tutorial.ps"
File : "$doc\/mapmaker\/mapmakerQTL.tutorial.ps"
File : "$doc\/mapmaker\/mapmakerqtl.refguide.ps"
File : "$dat\/mapmaker\/mouse.in"
File : "$dat\/mapmaker\/mouse.prep"
File : "$dat\/mapmaker\/mouse.raw"
File : "$dat\/mapmaker\/sample.in"
File : "$dat\/mapmaker\/sample.inp"
File : "$dat\/mapmaker\/sample.inq"
File : "$dat\/mapmaker\/sample.raw"
File : "$tutorials\/bioLegato\/sequence\/sequence.html"
File : "$tutorials\/bioLegato\/dotmatrix\/dotmatrix.html"
File : "$doc\/artemis\/manual\/index.shtml"
File : "$tutorials\/bioLegato\/keywords\/keywords.html"
File : "$tutorials\/bioLegato\/dataset\/dataset.html"
File : "$tutorials\/bioLegato\/database.sim\/database.sim.html"
File : "$tutorials\/bioLegato\/discrete\/discrete.html"
File : "$tutorials\/bioLegato\/multalign\/multalign.html"
File : "$tutorials\/bioLegato\/pairwise.sim\/pairwise.sim.html"
File : "$doc\/Phylip\/retree.html"
File : "$doc\/Phylip\/treedist.html"
File : "$doc\/Phylip\/pars.html"
File : "$tutorials\/bioLegato\/phylogeny\/distance\/phylip.distance.html"
File : "$tutorials\/bioLegato\/phylogeny\/parsimony\/phylip.parsimony.html"
File : "$tutorials\/bioLegato\/gde.bugs.html"
File : "$tutorials\/bioLegato\/gde.menus.html"
File : "$tutorials\/bioLegato\/dataentry.html"
File : "$tutorials\/bioLegato\/bigjobs.html"
File : "$tutorials\/bioLegato\/gde.html"
File : "$doc\/BIRCH\/birchadmin\/customdoc.html"
File : "$doc\/BIRCH\/birchadmin\/makemenus\/makemenus.html"
File : "$doc\/BIRCH\/birchdb\/birchdb.html"
File : "$doc\/BIRCH\/birchdb\/dat2ace.html"
File : "$doc\/BIRCH\/birchdb\/doc2ace.html"
File : "$doc\/BIRCH\/birchdb\/htmldoc.html"
File : "$doc\/BIRCH\/birchdb\/lbirchdb.html"
File : "$doc\/BIRCH\/birchdb\/lgbirchdb.html"
File : "$doc\/fasta\/align.txt"
File : "$doc\/fasta\/lalign.txt"
File : "$doc\/fasta\/ssearch.txt"
File : "$doc\/genographer\/index.html"
File : "$doc\/genographer\/tutorial\/tutorial.html"
File : "ftp:\/\/ftp.cc.umanitoba.ca\/psgendb\/BIRCH\/data\/genographer\/demodata"
File : "$doc\/BIRCH\/birchadmin\/pir.html"
File : "$doc\/BIRCH\/birchadmin\/genbank.html"
File : "$doc\/BIRCH\/utilities\/browser.csh.html"
File : "http:\/\/www.mygrid.org.uk"
File : "$dat\/mesquite\/examples"
File : "$doc\/mesquite\/doc\/manual.html"
File : "http:\/\/bluejay.ucalgary.ca\/help\/impatient.html"
File : "http:\/\/bluejay.ucalgary.ca\/help\/toc.html"
File : "http:\/\/bluejay.ucalgary.ca\/"
File : "$doc\/BIRCH\/birchadmin\/birchconfig\/birchconfig.new.html"
File : "$doc\/BIRCH\/birchadmin\/birchconfig\/birchconfig.update.html"
File : "$doc\/BIRCH\/birchadmin\/birchconfig\/birchconfig.uninstall.html"
File : "$local\/admin\/BIRCH.properties"
File : "$doc\/BIRCH\/birchadmin\/addprog\/binaries.html"
File : "$doc\/BIRCH\/birchdb\/birchdb.schema.gif"
File : "$doc\/BIRCH\/birchadmin\/logging.html"
File : "$doc\/BIRCH\/birchadmin\/inst.Web\/inst.Web.html"
File : "$tutorials\/bioLegato\/overview\/overview.html"
File : "$doc\/weighbor\/weighbor.man"
File : "$doc\/weighbor\/weighbor.ps"
File : "$doc\/weighbor\/weighbor.txt"
File : "$dat\/ExprConv\/example\/testdata.gpr"
File : "$doc\/ExprConv\/expressconvert_manual.pdf"
File : "$doc\/MBCRR\/dynamic\/Dynamic.man"
File : "http:\/\/www.bio.davidson.edu\/MAGIC"
File : "http:\/\/www.bio.davidson.edu\/projects\/magic\/magic.html"
File : "http:\/\/www.cs.cmu.edu\/~jernst\/stem"
File : "$doc\/MIDAS\/MIDAS.pdf"
File : "$doc\/TMEV\/MeV_3_1_release_notes.pdf"
File : "$doc\/TMEV\/MeV_Manual_3_1.pdf"
File : "ftp:\/\/ftp.cc.umanitoba.ca\/psgendb\/BIRCH\/data\/TMEV"
File : "$doc\/ArrayNorm\/ShortManual.pdf"
File : "ftp:\/\/ftp.cc.umanitoba.ca\/psgendb\/BIRCH\/data\/ArrayNorm"
File : "$doc\/BIRCH\/utilities\/btail.csh.html"
File : "$doc\/xylem\/flat2phyl.txt"
File : "$doc\/xylem\/phyl2flat.txt"
File : "$dat\/mrbayes\/adh.nex"
File : "$dat\/mrbayes\/anolis.nex"
File : "$dat\/mrbayes\/avian_ovomucoids.nex"
File : "$dat\/mrbayes\/bglobin.nex"
File : "$dat\/mrbayes\/cynmix.nex"
File : "$dat\/mrbayes\/kim.nex"
File : "$dat\/mrbayes\/primates.nex"
File : "$dat\/mrbayes\/replicase.nex"
File : "$doc\/mrbayes\/commref_mb3.1.pdf"
File : "$doc\/mrbayes\/mb3.1_manual.pdf"
File : "http:\/\/mrbayes.csit.fsu.edu\/Help\/"
File : "http:\/\/www.ncbi.nlm.nih.gov\/Sequin\/gettingstarted.html"
File : "http:\/\/www.ncbi.nlm.nih.gov\/Sequin\/QuickGuide\/sequin.htm"
File : "$doc\/mGDE\/csv2phyl.html"
File : "$doc\/bioLegato\/BLExtractSubset.html"
File : "$dat\/dialign\/conf"
File : "$dat\/dialign\/data"
File : "$doc\/dialign\/dialign.help"
File : "$doc\/dialign\/LGPL.txt"
File : "$doc\/dialign\/LICENSE.TXT"
File : "$doc\/bioLegato\/blrevcomp.html"
File : "$doc\/bioLegato\/bioLegato_man.txt"
File : "$doc\/NCBI\/netblast\/netlbast.html"
File : "$doc\/bioLegato\/Help\/bioLegatoHelp.html"
File : "$doc\/bioLegato\/MakeCons.help"
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