ó
£žbc           @€  sã  d  d l  m Z d  d l Z d  d l Z d  d l Z d  d l m Z m Z m Z m	 Z	 d  d l
 m Z d  d l m Z m Z m Z m Z d  d l m Z d  d l m Z d  d l m Z d  d	 l m Z e e j ƒ Z d
 „  Z d d d d d d d d d d d d d g Z e Z e j d Z  e d ƒ Z! d Z" e e" ƒ Z# e j$ Z% d d d d d d  d! d" d# d$ d% d& d' d( d) d* d+ d, g Z& d- d. d/ d0 g Z' d1 d2 d3 d4 g Z( d5 d6 d7 d8 d9 d: d; d< g Z) d= „  Z* d> „  Z+ e d? „ Z, d@ „  Z- dA „  Z. dB „  Z/ dC „  Z0 dD „  Z1 d dE „ Z3 dF „  Z4 dG „  Z5 dH „  Z6 dI „  Z7 dJ „  Z8 dK „  Z9 dL „  Z: dM „  Z; e dN „ Z< dO „  Z= dP „  Z> dQ „  Z? dR „  Z@ dS „  ZA dT „  ZB dU „  ZC dV „  ZD dW „  ZE dX „  ZF dY „  ZG eH dZ „ ZI d S([   iÿÿÿÿ(   t   with_statementN(   t   existst   abspatht   basenamet   join(   t   defaultdict(   t	   reportingt   qconfigt   qutilst   plotter_data(   t
   json_saver(   t   secondary_line_style(   t   jsontemplate(   t
   get_loggerc         C€  s   t  j j t j d |  ƒ S(   Nt
   html_saver(   t   ost   pathR   R   t   LIBS_LOCATION(   t   relpath_in_html_saver(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   get_real_path   s    s   #FF0000s   #0000FFs   #008000s   #A22DCCs   #FFA500s   #800000s   #00CCCCs   #B2DF8As   #333300s   #CCCC00s   #000080s   #008080s   #00FF00s   .htmls   template.htmlt   statics   static/jquery-1.8.2.min.jss   static/flot/jquery.flot.min.jss   static/flot/excanvas.min.jss!   static/flot/jquery.flot.dashes.jss&   static/scripts/draw_cumulative_plot.jss   static/scripts/draw_nx_plot.jss   static/scripts/draw_gc_plot.jss   static/scripts/draw_frc_plot.jss   static/scripts/utils.jss   static/scripts/hsvToRgb.jss!   static/scripts/draw_genes_plot.jss   static/dragtable.jss   static/ie_html5.jss3   static/bootstrap/bootstrap-tooltip-5px-lower.min.jss!   static/bootstrap/bootstrap.min.jss*   static/bootstrap/bootstrap-tooltip-vlad.jss%   static/scripts/build_report_common.jss+   static/scripts/build_total_report_common.jss$   static/flot/jquery.flot.tickrotor.jss    static/flot/jquery.flot.stack.jss'   static/scripts/draw_metasummary_plot.jss+   static/scripts/draw_meta_misassembl_plot.jss   bootstrap/bootstrap.csss
   common.csss
   icarus.csss
   jquery.csss   d3.jss   jquery-1.8.2.min.jss   jquery-ui.jss   bootstrap/bootstrap.min.jss   scripts/build_icarus.jss   scripts/display_icarus.jss   scripts/icarus_interface.jss   scripts/icarus_utils.jsc         C€  s=   t  j r' d t t |  ƒ ƒ j ƒ  d Sd t |  ƒ d Sd  S(   Ns    <script type="text/javascript">
s   
</script>
s$   <script type="text/javascript" src="s   "/></script>
(   R   t   portable_htmlt   openR   t   read(   t   script_rel_path(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   js_html]   s    	c         C€  s=   t  j r' d t t |  ƒ ƒ j ƒ  d Sd t |  ƒ d Sd  S(   Ns   <style rel="stylesheet">
s
   
</style>
s   <link rel="stylesheet" href="s   "/>
(   R   R   R   R   R   (   t   css_rel_path(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   css_htmld   s    	c         C€  sç  t  t ƒ Õ} | j ƒ  } g  } x< t D]4 } t j rI d | k rI q( n  | j t | ƒ ƒ q( W| j d d j	 | ƒ ƒ } | rè | j d t d ƒ ƒ } | j d t d ƒ ƒ } | j d d j	 g  t
 D] } t | ƒ ^ qÇ ƒ ƒ } nB | j d t d	 ƒ ƒ } | j d t d
 ƒ ƒ } | j d d ƒ } | j d t d ƒ ƒ } | j d t d ƒ ƒ } | j d t d ƒ ƒ } | j d t  t d ƒ ƒ j ƒ  ƒ } t j j |  ƒ r¸t j |  ƒ n  t  |  d ƒ  } | j | ƒ Wd  QXWd  QXd  S(   Nt   draw_gc_plots   {{ allscripts }}s   
s   {{ buildreport }}s#   static/scripts/build_report_meta.jss   {{ buildtotalreport }}s)   static/scripts/build_total_report_meta.jss   {{ metascripts }}s   static/scripts/build_report.jss$   static/scripts/build_total_report.jst    s   {{ bootstrap }}s"   static/bootstrap/bootstrap.min.csss   {{ common }}s   static/common.csss   {{ report }}s   static/report.csss   {{ glossary }}s   glossary.jsont   w(   R   t   template_fpathR   t	   aux_filesR   t   no_gct   appendR   t   replaceR   t   aux_meta_filesR   R   R   R   R   t   removet   write(   t
   html_fpatht   is_metat   template_filet   htmlt   script_textst   aux_f_rel_patht   aux_meta_filet   f_html(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   initk   s.    7$c         C€  sx   t  |  ƒ  } | j ƒ  } Wd  QXt j | | d i d „  d 6ƒ} t | ƒ } t  | d ƒ  } | j | ƒ Wd  QXd  S(   Nt   more_formattersc         S€  s   d j  |  ƒ S(   Ns   , (   R   (   t   v(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   <lambda>Š   s    R   R   (   R   R   R   t   expandt   _embed_css_and_scriptsR&   (   R   R'   t	   data_dictt   fR*   R.   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   save_icarus_html‡   s     c      
   C€  st  d } d } d } d } d } d } xI| t  | | f | t | | f g D]#\ } } }	 }
 x| D]} t | ƒ r t | ƒ } t | ƒ } n0 t t t | j d ƒ Œ  ƒ } t | ƒ s¿ qb n  | | } |	 | } t j	 rDt
 | ƒ W } | j ƒ  } d j d	 „  | j d ƒ Dƒ ƒ } |  j | | d | d |
 ƒ }  Wd  QXqb | j | | ƒ } |  j | | ƒ }  qb WqI W|  S(
   Ns1   <script type="text/javascript" src="%s"></script>s)   <script type="text/javascript" name="%s">s       </script>s3   <link rel="stylesheet" type="text/css" href="%s" />s2   <style type="text/css" rel="stylesheet" name="%s">s       </style>t   /s   
c         s€  s   |  ] } d | Vq d S(   t    i   Ns           (    (   t   .0t   l(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pys	   <genexpr>®   s    (   t   icarus_js_filest   icarus_css_filesR   R   R   R   t   static_dirpatht   splitR   R   R   R   R#   (   R*   t   js_line_tmplt   js_l_tagt   js_r_tagt   css_line_tmplt	   css_l_tagt	   css_r_tagt	   line_tmplt   filest   l_tagt   r_tagt	   rel_fpatht   fpatht   linet   l_tag_formattedR6   t   contentst   line_formatted(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR4   ’   s4    %

	"+c         C€  s}   t  j j | ƒ s d  St | ƒ  } | j ƒ  } Wd  QXt j d | d |  | ƒ } t | d ƒ  } | j | ƒ Wd  QXd  S(   Ns   {{ s    }}R   (	   R   R   t   isfilet   NoneR   R   t   ret   subR&   (   t   text_to_insertt   keywordR'   R.   t	   html_text(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   insert_text_icarus·   s    c         C€  sA   t  |  ƒ d k r= t |  ƒ d @} |  d  d t | ƒ }  n  |  S(   Ni2   Iÿÿÿÿ    t   _(   t   lent   hasht   str(   t   ref_namet   ref_hash(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   trim_ref_nameÈ   s    c         C€  s_   t  |  ƒ  } | j ƒ  } Wd  QXt j d d | ƒ } t  |  d ƒ  } | j | ƒ Wd  QXd  S(   Ns   {{(\s+\S+\s+)}}R   R   (   R   R   RR   RS   R&   (   R'   R.   RV   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt
   clean_htmlÏ   s
    c         C€  s÷   | d  k r$ t j j |  t ƒ } n  t j j | ƒ sC t | ƒ n  t | ƒ  } | j ƒ  } Wd  QXt	 j
 rƒ t j | t	 j ƒ n  t j | ƒ t | ƒ  } | j ƒ  } Wd  QXt j d | d | | ƒ } t | d ƒ  } | j | ƒ Wd  QX| S(   Ns   {{ s    }}R   (   RQ   R   R   R   t   report_fnameRP   R/   R   R   R   t	   save_jsont   shutilt   copyt   json_output_dirpathR%   RR   RS   R&   (   t   results_dirpatht
   json_fpathRU   R'   t   f_jsont	   json_textR.   RV   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR"   ×   s    	c         C€  s)   t  j j |  t ƒ } t | d t ƒ| S(   NR(   (   R   R   R   R`   R/   t   True(   Re   R'   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   init_meta_reportò   s    c   	      C€  s"  t  j j |  t ƒ } t  j j | ƒ s: t | d t ƒn  d d l m } | j	 } t
 t j ƒ } | r~ t | | |  | ƒ n  t | ƒ  } | j ƒ  } Wd  QXd } t j d | d d d j | ƒ d	 | ƒ } t j d
 d | ƒ } t | d ƒ  } | j | ƒ Wd  QX| j d | ƒ d  S(   NR(   iÿÿÿÿ(   t   search_references_metat   totalReports   {{ s    }}t   [t   ,t   ]s   {{(\s+\S+\s+)}}s   {}R   sR     Extended version of HTML-report (for all references and assemblies) is saved to (   R   R   R   R`   RP   R/   Ri   t
   quast_libsRk   t   taxons_for_kronaR   R   t   LOGGER_META_NAMEt   create_krona_chartsR   R   RR   RS   R&   t	   main_info(	   Re   t
   json_textsR'   Rk   Rq   t   meta_logR.   RV   RU   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   create_meta_reportø   s     	.c         C€  s7   t  j |  | | ƒ } | r3 t |  | d ƒ t  _ n  d  S(   NRl   (   R
   t   save_empty_reportR"   Rh   (   Re   t
   min_contigt	   ref_fpathRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRx     s    c         C€  sW   t  j |  | | ƒ } | rS t |  | d ƒ t  _ t j d t j j |  t	 ƒ ƒ n  d  S(   NRl   s:     HTML version (interactive tables and plots) is saved to (
   R
   t   save_total_reportR"   Rh   t   logt   infoR   R   R   R`   (   Re   Ry   Rz   Rf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR{     s    c         C€  sŠ   t  |  d ƒ u } t  | d ƒ ] } xS | D]K } | j d ƒ d k ri t j d d t j d | ƒ } n  | j | ƒ q+ WWd  QXWd  QXd  S(   Nt   rR   t   assemblies_linksiÿÿÿÿs   ../contigs_reports/s   ../s   /contigs_reports/(   R   t   findRR   RS   R   t   combined_output_nameR&   (   R'   t   html_top_fpatht   templatet   resultRL   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   copy_meta_alignment_viewers  s    #c         C€  sõ  t  j j |  t j t j ƒ } t  j j |  t j ƒ } t t ƒ } t  j j | ƒ sd t  j	 | ƒ n  | d j
 t j ƒ | d j
 t j ƒ t  j j | t j ƒ } t  j j | t j ƒ } t j | | ƒ x´ t | ƒ D]¦ \ } } t | ƒ }	 t | ƒ d k r@t  j j | t j d ƒ }
 t  j j |
 ƒ r@t j }	 q@n  t  j j | |	 d ƒ } t  j j | |	 d ƒ } t | | ƒ qÙ Wt  j j |  t j t j ƒ } t  j j |  t j ƒ } t | d ƒ } t | d ƒ } t } xò | D]ê } | j d ƒ d k rt } n  | j d	 ƒ d k r¾d
 | k r¾d | k r¾d | k r¾t j d | ƒ d } d | k r”t j d | ƒ r”t j d | ƒ d } n  | j d d ƒ } | | k r¾t } q¾n  | sê| j | ƒ qêqêWWd  QXWd  QXt |  | ƒ | S(   Nt   linkst   links_namesi   s   .htmlR~   R   s   </tr>iÿÿÿÿs   <a href="icarus_viewerss   QUAST reports   Contig sizes   Contig alignments   <a.*>(.*)<\/a>i    t   tooltips   title="(.+)"R9   RX   (   R   R   R   R   R   t   icarus_dirnameR   t   listt   isdirt   mkdirR"   t   icarus_html_fnamet   icarus_linkt   contig_size_viewer_fnameRb   Rc   t	   enumerateR^   RY   t   one_alignment_viewer_nameR   R…   R   t   FalseR€   RR   t   findallR#   Ri   R&   t   save_icarus_links(   Re   t	   ref_namest   combined_ref_icarus_dirpatht   icarus_dirpatht   icarus_linkst   contig_size_fpatht   contig_size_top_fpatht   indext   reft	   html_namet   one_alignment_viewer_fpatht   icarus_ref_fpatht   icarus_top_ref_fpatht   icarus_menu_fpatht   icarus_menu_top_fpathRƒ   R„   t   skipping_trRL   R\   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   create_meta_icarus%  sL    	9 c      
   C€  s   | j  d ƒ t j j t j d ƒ } t j j | t j ƒ } y d d  l } WnC t k
 r’ y d d  l	 } Wq“ t k
 rŽ | j
 d ƒ d  SXn Xt j j | ƒ sµ t j | ƒ n  | j | d ƒ } | d } d }	 t j j | d |	 ƒ }
 t |
 d	 ƒ } xF t | ƒ D]8 \ } } t t j j | | |	 ƒ d	 ƒ } | j ƒ  qWxß| d
 D]Ó} | j | ƒ } | d } | sqTn  g  } | d } xQ | D]I } | r¦Pn  x6 | d
 D]* } | d t j j k r±| d } Pq±q±Wq–W| sïqTn  d  | k r)g  | D] } | d  k	 r| n d ^ q} n  | d } xœ t | ƒ D]Ž \ } } t j j | | |	 ƒ } t | d ƒ X } | |  k r­| j t | | ƒ d |  | d ƒ n | j t | | ƒ d ƒ Wd  QXq@W| |  k r
| j t t | ƒ ƒ d |  | d ƒ qT| j t t | ƒ ƒ d ƒ qTW| j ƒ  g  } t j j | d ƒ } t j j | d ƒ } t | d	 ƒ j ƒ  t | d	 ƒ j ƒ  xt | ƒ D]\ } } t j j | | d ƒ } t j j | | |	 ƒ } t j d d | d | d | d | g d t | d ƒ d t | d ƒ ƒ} | d k rH| j
 d | d | ƒ n< | j t j j t j | d ƒ ƒ | j d | d | ƒ t j s˜t j | ƒ q˜q˜Wt | ƒ d
 k rsd  } t j j | | d ƒ } t j d d | d | d |
 d | g d t | d ƒ d t | d ƒ ƒ} | d k r<| j
 d! | ƒ qs| j d" | ƒ | j t j j t j | d ƒ ƒ n  t j sŒt j |
 ƒ n  t | | | ƒ d  S(#   Ns$     Drawing interactive Krona plots...t
   kronatoolsiÿÿÿÿs:   Can't draw Krona charts - please install python-simplejsoni    t   assembliesNamess   _taxonomy.txtt   overallR   i   t   referenceNamet   reportt
   metricNamet   valuest   as   	s   
s	   krona.logs	   krona.errs   _taxonomy_chart.htmlt   perls   -Is   /libs   /scripts/ImportText.pls   -ot   stdoutt   stderrs3   Error occurred while Krona was processing assembly s%   . See Krona error log for details: %ss     Krona chart for s    is saved to t   summarysZ   Error occurred while Krona was building summary chart. See Krona error log for details: %ss"     Summary Krona chart is saved to (    R}   R   R   R   R   R   t   krona_dirnamet   jsont   ImportErrort
   simplejsont   warningR‹   RŒ   t   loadsR   R   t   closeR   t   Fieldst   TOTAL_ALIGNED_LENRQ   R&   R[   t   sumR   t   call_subprocessR"   Rt   t   debugR%   RY   t   save_krona_paths(   Rq   Rv   Re   Ru   t   krona_dirpatht   krona_res_dirpathR²   t	   json_datat
   assembliest   krona_txt_extt   krona_common_fpatht   krona_common_fileR›   t   namet
   krona_fileRh   R\   t   lengthsR©   t   sectiont   metricR;   t   cur_assembliest   krona_fpatht   f_kronat   krona_fpathst   krona_log_fpatht   krona_err_fpatht   krona_txt_fpatht   return_code(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRs   N  s¤    	
"


.
*%,!
#!#	#!	&	c         C€  s8   t  j |  | | | | ƒ } | r4 t |  | | ƒ n  d  S(   N(   R
   t
   save_coordR"   (   Re   t   coord_xt   coord_yt
   name_coordt   contigs_fpathsRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRÒ   §  s    c         C€  st  | r’ t  j j |  t ƒ } t | ƒ  } | j ƒ  } Wd  QXt j d d | ƒ } t j d d d | ƒ } t | d ƒ  } | j | ƒ Wd  QXnÞ g  | D] } t	 j
 | ƒ ^ q™ } g  | D] }	 | |	 ^ q» }
 g  |
 D] } | d ^ qØ } g  | D] } t t j j | ƒ ^ qõ } t |  d | ƒ g  t | ƒ D]& \ } } |
 | d	 t k r4| ^ q4} t |  d | ƒ d  S(   Ns   {{ t   colorss    }}t   standard_colorst   broken_scaffoldss   []R   i    i   s	   {{ colorss   {{ colors }}s   {{ broken_scaffolds(   R   R   R   R`   R   R   RR   RS   R&   R   t   label_from_fpatht   html_colorsR	   R×   R›   t   save_recordR   R   (   Re   RÖ   t   dict_colorst   metaR'   R.   RV   t   contigs_fpatht   contig_labelst   contig_labelt   colors_and_lst   color_and_lsR×   t   colort   colors_for_htmlt   it   labelt   broken_contig_names(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   save_colors­  s    ")9c         C€  sb   | j  d d ƒ } | j  d d ƒ } t j | | | | | | ƒ } | r^ t | | | |  ƒ n  d  S(   Ns   _(%)R   t   #t   num(   R#   R
   t   save_meta_summaryR"   (   R'   Re   RÓ   RÔ   RÕ   t   labelst   refsRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRì   À  s
    c   
      C€  s–   d } g  | D] } | r# | d n d  ^ q } g  | D] } | rL | d n d  ^ q6 } t j | | | | | | ƒ }	 |	 r’ t | |	 | |  ƒ n  d  S(   Nt   allMisassembliesi    i   (   RQ   R
   t   save_meta_misassembliesR"   (
   R'   Re   t   coordsRí   Rî   RÕ   t   coordt   coords_xt   coords_yRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRð   È  s    ))c         C€  s2   t  j |  | | ƒ } | r. t |  | | ƒ n  d  S(   N(   R
   RÜ   R"   (   Re   t   filenamet   recordRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRÜ   Ñ  s    c         C€  s/   t  j |  | ƒ } | r+ t |  | d ƒ n  d  S(   Nt   referenceLength(   R
   t   save_reference_lengthsR"   (   Re   t   reference_lengthsRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRø   ×  s    c         C€  s/   t  j |  | ƒ } | r+ t |  | d ƒ n  d  S(   Nt   tickX(   R
   t   save_tick_xR"   (   Re   t   tick_xRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRû   Ý  s    c         C€  s2   t  j |  | | ƒ } | r. t |  | d ƒ n  d  S(   Nt   contigsLengths(   R
   t   save_contigs_lengthsR"   (   Re   RÖ   t   lists_of_lengthsRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyRþ   ã  s    c         C€  s2   t  j |  | | ƒ } | r. t |  | d ƒ n  d  S(   Nt   assembliesLengths(   R
   t   save_assembly_lengthsR"   (   Re   RÖ   t   assemblies_lengthsRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR  é  s    c         C€  s<   t  j |  | | | | ƒ } | r8 t |  | | d ƒ n  d  S(   Nt	   InContigs(   R
   t   save_features_in_contigsR"   (   Re   RÖ   t   feature_namet   feature_in_contigst   ref_feature_numRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR  ï  s    c         C€  s8   t  j |  | | | | ƒ } | r4 t |  | d ƒ n  d  S(   Nt   gcInfos(   R
   t   save_GC_infoR"   (   Re   RÖ   t   list_of_GC_distributionst    list_of_GC_contigs_distributionst   reference_indexRf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR	  õ  s    c         C€  s2   t  j |  | | ƒ } | r. t |  | d ƒ n  d  S(   Nt   krona(   R
   R½   R"   (   Re   RÍ   Rí   Rf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR½   û  s    c         C€  s/   t  j |  | ƒ } | r+ t |  | d ƒ n  d  S(   Nt   icarus(   R
   R”   R"   (   Re   R˜   Rf   (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR”     s    c         C€  s#   |  r t  j |  | | | ƒ n  d  S(   N(   R
   t   save_icarus_data(   Re   t   icarus_dataRU   t   as_text(    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyR    s    (J   t
   __future__R    R   Rb   RR   t   os.pathR   R   R   R   t   collectionsR   Rp   R   R   R   R	   t   quast_libs.html_saverR
   t   quast_libs.plotterR   t%   quast_libs.site_packages.jsontemplateR   t   quast_libs.logR   t   LOGGER_DEFAULT_NAMER|   R   RÛ   R’   t   scripts_insertedt   report_prefixR`   R   t   static_dirnameR>   t   html_aux_dirt   aux_dirnameR    R$   R=   R<   R   R   R/   R7   R4   RW   R^   R_   RQ   R"   Rj   Rw   Rx   R{   R…   R¤   Rs   RÒ   Ré   Rì   Rð   RÜ   Rø   Rû   Rþ   R  R  R	  R½   R”   Ri   R  (    (    (    sN   /home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/html_saver/html_saver.pyt   <module>   s¸   ""										%										)	Y													