a
    bʇ                     @   sh  d dl mZ dddddZdZdZd	Zd
ZdZdZdZ	dZ
d	ZdZd dlZd dlZd dlmZmZmZ d dlmZmZ d dlmZmZmZ d dlmZmZ e ZeejZeej Z!dZ"ej#r`zvd dl$Z$e$%d e$j&'dse$j&'dre(d e)d n0ej*Z*e+dde_*d dl,m-Z. d dl/Z$e*e_*dZ"W n( e0y^   e(d e)d Y n0 g a1g a2G dd de3Z4G dd de3Z5d d! Z6d"d# Z7dKd$d%Z8dLd&d'Z9dMd(d)Z:d*d+ Z;d,d- Z<ddddddddddefd.d/Z=d0d1 Z>d2d3 Z?dNd5d6Z@d7d8 ZAd9d: ZBd;d< ZCdOd=d>ZDdPd?d@ZEddddefdAdBZFdQdCdDZGdRdEdFZHdGdH ZIdIdJ ZJdS )S    )divisionz
sans-serifZnormalZmedium
   )familystyleZweightsize       @soliddashed   Tlargez#000000FN)fastaparserqconfig	reporting)
get_loggerget_main_logger)label_from_fpathparse_str_to_numrun_parallel)get_color_and_lscolorsZAgg0z1.0 zYCan't draw plots: matplotlib version is old! Please use matplotlib version 1.1 or higher.z	/dev/nullwz<Can't draw plots: python-matplotlib is missing or corrupted.c                   @   s&   e Zd Zd	ddZdd Zdd ZdS )
PlotN   c                 C   s,   ||||||f\| _ | _| _| _| _| _d S N)x_valsy_valscolorlsmarker
markersize)selfr   r   r   r   r    r!    r#   </home/psgendb/BIRCHDEV/pkg/quast-5.2.0/quast_libs/plotter.py__init__Q   s    zPlot.__init__c              	   C   s(   t j| j| j| j| jt| j| jd d S )N)r   r   Zlwr    r!   )	pltplotr   r   r   r   
line_widthr    r!   r"   r#   r#   r$   r'   T   s    z	Plot.plotc                 C   s
   t | jS r   )maxr   r)   r#   r#   r$   	get_max_yX   s    zPlot.get_max_y)Nr   __name__
__module____qualname__r%   r'   r+   r#   r#   r#   r$   r   P   s   
r   c                   @   s&   e Zd ZdddZdd Zd	d
 ZdS )Bar皙?Nr   edgec	           	   	   C   s8   ||||||||f\| _ | _| _| _| _| _| _| _d S r   )x_valy_valr   widthbottomhatch	edgecoloralign)	r"   r3   r4   r   r5   r6   r7   r8   r9   r#   r#   r$   r%   ]   s    zBar.__init__c              
   C   s.   t j| j| j| j| j| j| j| j| j	d d S )N)r5   r9   r   r8   r7   r6   )
r&   Zbarr3   r4   r5   r9   r   r8   r7   r6   r)   r#   r#   r$   r'   a   s    zBar.plotc                 C   s2   t | jtrt| jS | jr(| j| j S | jS d S r   )
isinstancer4   listr*   r6   r)   r#   r#   r$   r+   e   s
    
zBar.get_max_y)r1   Nr   Nr2   r,   r#   r#   r#   r$   r0   \   s   
r0   c                 C   s6   t jjddd}t jjdd| r&g dnd d}||fS )N   T)nbinsinteger)r      r   )r=   r>   Zsteps)
matplotlibtickerZMaxNLocator)is_histogramxLocatoryLocatorr#   r#   r$   get_locatorso   s    rE   c                 C   sL   |dkrdd }| d7 } n*|dkr4dd }| d7 } ndd }| d	7 } | |fS )
Ng     @c                 S   s   d| d  S )N%dr   r#   xposr#   r#   r$   <lambda>w       zy_formatter.<locals>.<lambda>z (bp)g    SAc                 S   s   d| d  S )NrF   gMbP?r#   rG   r#   r#   r$   rJ   z   rK   z (kbp)c                 S   s   d| d  S )NrF   gư>r#   rG   r#   r#   r$   rJ   }   rK   z (Mbp)r#   )ylabelmax_ymkfuncr#   r#   r$   y_formatteru   s    

rO   c                 C   s   t  }|d | }| rB||j|j|jd |jd g n(||j|j|jd  |j|jd g |j	
t t 
t |S )NTr1         ?g?)r&   ZgcaZset_axisbelowZget_positionZset_positionZx0Zy0r5   heightyaxisZgrid	with_grid)vertical_legendaxZboxr#   r#   r$   set_ax   s    
$(
rV   c           
      C   s   |r2d|v r2t ||\}}tj|}|j| | rDtj| td |rVtj	|td t
|\}}	|j|	 |j| |r| s|j d |r|d d S )Nlength)ZfontsizeFlog)rO   r@   rA   ZFuncFormatterrR   Zset_major_formatterr&   xlabelaxes_fontsizerL   rE   Zset_major_locatorZxaxisZaxesZ	get_xaxisZset_visibleZ
set_xscale)
rY   rL   rM   rU   logarithmic_x_scalerB   rN   ZmkformatterrC   rD   r#   r#   r$   
add_labels   s    r\   c                 C   sp   zX|r| j |dddddd}n"| j |dddd|dk r8|ndd	}|jD ]}|d
 qFW n tyj   Y n0 d S )Nzcenter left)rP         ?Tr   )locbbox_to_anchorfancyboxshadowZ	numpointszupper center)g\(\?g333333ÿ   )r^   r_   r`   ra   Zncolr   )legendZlegendHandlesZ	set_hatch	Exception)rU   legend_list	n_columnsrT   rc   handler#   r#   r$   
add_legend   s    
rh   c                 C   s   zddl m} || }W n   td Y d S 0 tD ]}|j|dd q6tD ]}|| qNz@| }d|d< d|d	< dd l}|j	 |d
< |j	 |d< W n t
y   Y n0 |  td d S )Nr   )PdfPagesz/PDF with all tables and plots cannot be createdtightZbbox_incheszQUAST full reportZTitleZQUASTZAuthorZCreationDateZModDateall)Zmatplotlib.backends.backend_pdfri   loggerwarningpdf_tables_figuressavefigpdf_plots_figuresZinfodictdatetimenowAttributeErrorcloser&   )all_pdf_fpathri   Zall_pdf_filefiguredrr   r#   r#   r$   save_to_pdf   s*    
ry   c                 C   s   t j| dd d S )Nrj   rk   )r&   rp   )
plot_fpathr#   r#   r$   	save_plot   s    r{   c                 C   sB  t  }t jdi t d}t|}|D ]}t|| }|  q(|rXt||t	|d t
|||||d |rxt | |	pdtdtt|d g}	t |	 |
rt jtt|
|
d|rdnd d	 tst   d S trt | | d
tj 7 } tjrtt| fgd nt|  |d|   |r4t| t d d S )Nfontr   )rf   rT   )rB   r?   皙?ZsmallZvertical)r   Zrotation.   z    saved to rl   )r|   )r&   Zgcfrcr|   rV   r*   r+   r'   rh   rf   r\   ZxlimintmathceilZylimZxticksrangelencan_draw_plotsru   
with_titletitler   plot_extensionis_combined_refr   r{   inforq   append)rz   r   plotsre   x_labely_labelrT   rB   x_limity_limitx_ticksvertical_ticksadd_to_reportrm   rw   rM   rU   r'   r#   r#   r$   create_plot   s:    

 
"

r   c              	   C   sb  t sd S td g }d}t||D ]v\}}dg}	t|ddD ]}
|	|	d |
  q>ttdt|	}|rzt	|d |}t
|\}}|t||	|| q$| r&dg}	tt|  ddD ]}
|	|	d |
  qttdt|	}|	d }t	||d }|	| || |t||	tt dd |D }| rD|dg7 }t||||d	d
d|gd d S )Nz  Drawing cumulative plot...r   Treversec                 S   s   g | ]}t |qS r#   r   .0fpathr#   r#   r$   
<listcomp>  rK   z#cumulative_plot.<locals>.<listcomp>	ReferenceContig indexzCumulative lengthr   r   r   )r   rm   r   zipsortedr   r;   r   r   r*   r   r   r   get_chr_lengths_from_fastafilevaluesreference_colorreference_lsr   )	referencecontigs_fpathslists_of_lengthsrz   r   r   max_xcontigs_fpathlengthsr   lr   r   r   Zreference_lengthre   r#   r#   r$   cumulative_plot   s<    



r   c           "      C   sV  t rtd| d  g }d}tt| }	g }
g }tdd | D d }g }|D ]}|| }|| }|rZ|szqZ|| d}g }g }t	||D ].\}}|dkr||7 }q|| || qt
t	||dd d	d
}dd |D }dd |D }g }g }t|D ]}d}|}t	||D ]8\}}|| |kr$||7 }||7 }||kr$ q^q$|| ||d |	  ||d  ||d |	  q|
| || t|t|}t|\}}|t|||| qZtjrddlm}  | | |
|d| | t rRd| d }dd |D }!t||||!ddd|gdtd|gd d S )N
  Drawing z FRCurve plot...r   c                 s   s   | ]}t |V  qd S r   )sum)r   feature_in_contigsr#   r#   r$   	<genexpr>#  rK   zfrc_plot.<locals>.<genexpr>r   c                 S   s   | d d | d  S )Nr   rP   r   r#   )tupler#   r#   r$   rJ   7  rK   zfrc_plot.<locals>.<lambda>T)keyr   c                 S   s   g | ]}|d  qS r   r#   r   r   r#   r#   r$   r   8  rK   zfrc_plot.<locals>.<listcomp>c                 S   s   g | ]}|d  qS r   r#   r   r#   r#   r$   r   9  rK         Y@
html_savercoordz	FRCurve ()c                 S   s   g | ]}t |qS r#   r   r   r#   r#   r$   r   X  rK   zFeature spacezGenome coverage (%)d   )r   r   r   r   )r   rm   r   r   r   r   r   r*   r   r   r   r   r   r   r   html_reportquast_libs.html_saverr   
save_coordr   )"results_dir	ref_fpathr   contigs_aligned_lengthsZfeatures_in_contigs_by_filerz   r   r   rM   Z
ref_lengthjson_vals_xjson_vals_yZmax_featuresaligned_contigs_fpathsr   Zaligned_lengthsr   Zlen_with_zero_featuresr   Znon_zero_feature_in_contigsr   featureZoptimal_sorted_tuplesZsorted_lengthsZsorted_featuresr   r   Z
features_nZfeatures_cntZcumulative_lenr   r   r   re   r#   r#   r$   frc_plot  sr    









r   Nxc              	   C   s  t rtd| d  g }g }g }	tt||D ]\}
\}}|sX|g  |	g  q0|jdd dg}|d g}dg}|d g}d}t|}|r||
 }d}|rtj	}|D ]}||7 }|d | }t r||d d	  || || || |d | |kst
|d
kr||d d	  || || || q|| |	| t r0||d d	  |d ||d d	  |d t|\}}|t|||| q0tjrddlm} || ||	d| | t sd S dd |D }t||||ddddgd d S )Nr    plot...Tr   g        r   r   r   g|=r   r   r   c                 S   s   g | ]}t |qS r#   r   r   r#   r#   r$   r     rK   zNx_plot.<locals>.<listcomp>rH   zContig lengthr   r   )r   rm   r   	enumerater   r   sortr   r   min_differencer   r   r   r   r   r   r   r   )r   Zreduce_pointsr   r   rz   r   Zreference_lengthsr   r   r   idr   r   Zvals_xZvals_yZvals_NxZvals_lZlcurZlsumr   r   rH   r   r   r   re   r#   r#   r$   Nx_plot^  sf    












r   c              	   C   s   t r
tjrd S d}td| d  g }|}| r:|| g }t|D ]p\}\}}	t|	D ]\}
}|dkrVd|	|
< qV| r|t|d krt}t}nt	|| \}}|
t||	|| qBdd |D }| r|d	g7 }t||||d
dddgd d S )Nz
GC contentr   r   r   皙?r   c                 S   s   g | ]}t |qS r#   r   r   r#   r#   r$   r     rK   z#GC_content_plot.<locals>.<listcomp>r   GC (%)z	# windowsr   r   )r   r   no_gcrm   r   r   r   r   r   r   r   r   r   )r   r   Zlist_of_GC_distributionsrz   r   r   Z
all_fpathsiZGC_distribution_xZGC_distribution_yZid2vr   r   re   r#   r#   r$   GC_content_plot  s*    



r   c              	   C   s   t r
tjrd S t| d }td| d  g }t| \}}|\}}t||D ]\}	}
|t	|	|
|dd qNt| g}t
||||dddd	gd
 d S )Nz GC contentr   r   r?   r5   r   z	# contigsr   r   r   )r   r   r   r   rm   r   r   r   r   r0   r   )r   ZGC_distributionsrz   r   r   r   r   r   r   ZGC_xZGC_yre   r#   r#   r$   contigs_GC_content_plot  s    

r   c                 C   s  t sd S td| d  g }d}|D ]}|| }ttt|d }	dg}
d}|D ]}||7 }|
| qTt|	dkrt|	d |}t|\}}|t	|	|
|| q&| r|t	d|g| | gt
t d| }dd |D }| r|d	g7 }t||||d
|d d S )Nr   z cumulative plot...r   r   r   zCumulative # complete c                 S   s   g | ]}t |qS r#   r   r   r#   r#   r$   r     rK   z&genes_operons_plot.<locals>.<listcomp>r   r   )r   r   )r   rm   r   r;   r   r   r   r*   r   r   r   r   r   )Zreference_valuer   Zfiles_feature_in_contigsrz   r   r   r   r   r   r   r   Z
total_fullZfeature_amountr   r   re   r#   r#   r$   genes_operons_plot  s0    
r   c                 C   s  t sd S t| dk r*td| d  d S td| d  g }t|d }t|ddd }	d }
|	|kr|	dkrtd	tt|	d	}
qd
}
ntd	tt|	| d	}
|st||
 d |
 }|st	|	|
 d
 |
 }d}|d }|d }t
t| |D ]R\}\}}t|\}}|tkr.d}nd}|t||| |  ||||d qdd | D }t||||d|dd||t|   |t| d
   gt|d|gd	 d S )Nr   z  Skipping drawing z< histogram... (less than 2 columns histogram makes no sense)r   z histogram...r   Tr   r   r   r?   333333?rb   r   rH   )r5   r7   c                 S   s   g | ]}t |qS r#   r   r   r#   r#   r$   r     rK   zhistogram.<locals>.<listcomp>)r   r   rB   r   r   )r   r   rm   r   r   r   powfloorrX   r   r   r   r   primary_line_styler   r0   r   r*   )r   r   rz   r   yaxis_titleZbottom_valueZ	top_valuer   	min_value	max_valueZexponentr5   intervalZ	start_posr   r   valr   r   r7   re   r#   r#   r$   	histogram  sB    
("r   c	                    s  t sd S td| d  g }	d}
tdd |D }ttd|}d}|g| }|rn|rn||d  d|d	<  fd
d|D }rdd |D }d|d< d|d< tt| |D ]\}\}}tt||
}
t	|\}}|rHt|||D ]F\}}}|dkr|	t
||||ddd q|	t
||||d q|	t
dd|d q||d	  dd |D }|d	  d7  < |	t||d d	 dd||d qtdt|d }|d d | }|d d | }r|dd |r<r|   d n|  d fdd|D }|d t| }| |t| tt|d dd	D ]N}|| ||d   }}|d |krP|d8 }||| ||d qjqPdd | D }d}d}t|||	|||ddt|gd|
d g|d 
 d S )!Nr   ...r   c                 s   s   | ]}t |V  qd S r   r   )r   r   r#   r#   r$   r   ,  rK   z%coverage_histogram.<locals>.<genexpr>rP   r   r   r   c                    s   g | ]}t |   qS r#   )strr   r3   )bin_sizelow_thresholdr#   r$   r   3  rK   z&coverage_histogram.<locals>.<listcomp>c                 S   s   g | ]}|d  qS r   r#   r   r#   r#   r$   r   5  rK   r   z#595959rH   )r5   r8   r7   r   )r   c                 S   s   g | ]}|d  qS )r]   r#   r   r#   r#   r$   r   E  rK   orb   )r    r!   r   r   r   r
   c                    s   g | ]}| k r|qS r#   r#   r   rH   )	last_tickr#   r$   r   T  rK   r   c                 S   s   g | ]}t |qS r#   r   r   r#   r#   r$   r   _  rK   zCoverage depth (x)zTotal lengthTr}   )r   r   rB   r   r   r   )r   rm   r   r*   r;   r   r   r   r   r   r0   r   r   insertr   r   )r   r   rz   r   r   Z	draw_barsZmax_covr   Zhigh_thresholdr   rM   r   r   	bar_widthZ
bar_widthsZx_ticks_labelsr   r   r   r   r   r3   r4   Zplot_x_valsZx_factorr   r   Zprev_valre   rY   rL   r#   )r   r   r   r$   coverage_histogram#  sn    

$
r   c                    s  t r|
d| d  g }t|}t|}d}g  g g }g t|D ]g }g }ttd|d }t|D ]|  d|d d   7  < ||  |  r|  dkr|t|   ql|	r|d ql|d  ql | | qFg }t|D ]fdd	t|D fd
d	ttD }|sR|	r |tttd d t  ||  qg }g }t	j
stt|||dd dfdd	tdD \}}t|D ] fdd	ttD }fdd	ttD t|t}td | \}}|t||dddd t	j
s|| | qdd	 |D }t	j
rtt|||dd dfdd	tdD \}}t|D ]R fdd	ttD }fdd	ttD || | qt	jrV| rVddlm} || ||||dd|| t r|}t|||||dd g| ddt|d gd!|
d" d S )#Nr   z metaQUAST summary plot...r   r   Q?r]   -c                    s(   g | ] }t  | k r |  qS r#   r   r   jarr_yr   r#   r$   r     rK   z*draw_meta_summary_plot.<locals>.<listcomp>c                    s    g | ]} | d ur | qS r   r#   )r   k)points_yr#   r$   r     rK   rP   c                 S   s   | d S Nr   r#   rH   r#   r#   r$   rJ     rK   z(draw_meta_summary_plot.<locals>.<lambda>)r   r   c                    s   g | ]  fd dD qS )c                    s   g | ]}|  qS r#   r#   r   r   r#   r$   r     rK   5draw_meta_summary_plot.<locals>.<listcomp>.<listcomp>r#   r   sorted_valuesr   r$   r     rK   rb   c                    s   g | ]}  | qS r#   r#   r   r   arr_xr   r#   r$   r     rK   c                    s   g | ]} |  qS r#   r#   r   arr_y_by_refsr   r#   r$   r     rK   Zdottedr      )r   r   r    r!   c                 S   s   g | ]}|qS r#   r#   )r   rr#   r#   r$   r     rK   c                 S   s   | d S r   r#   r   r#   r#   r$   rJ     rK   c                    s   g | ]  fd dD qS )c                    s   g | ]}|  qS r#   r#   r   r   r#   r$   r     rK   r   r#   r   r   r   r$   r     rK   c                    s   g | ]}  | qS r#   r#   r   r   r#   r$   r     rK   c                    s   g | ]} |  qS r#   r#   r   r  r#   r$   r     rK   r    _Tr   F)r   rT   r   r   r   r   rm   )r   r   r   r   r;   r   r   r   filterr   use_input_ref_orderr   r   r*   r   r   r   r   r   Zsave_meta_summaryreplacer   )
html_fpathoutput_dirpathlabels	ref_namesresultsrz   r   r   r   Zprint_all_refsrm   r   Zref_numcontigs_numrM   Zmean_valuesZ	to_plot_xZ	to_plot_yZarrZselected_refssignificant_points_yjson_points_xjson_points_ypoints_xr   r   Zrefs_for_htmlr   re   r#   )r   r   r  r   r   r   r   r$   draw_meta_summary_ploth  s     

$


r  c                    s  t rtd| d  g }t|}t|dtd krF|d d d }tjjtjjtjjg g }d}t	t
d|d }	d}
g }g }t
|D ]}d}g }d}t|dkr\|t k r\| | | r| | | | nd }|rR|dkrR|t| t r6|t|	| |d t| |
dd	 || t|d }||	|  ||d  |d7 }qt
|t D ]}| | | | }|rj|dkrj|t| t r|t|	| |d
 t| |
dt|d d
 d || |t|d
 7 }||	|  ||d
  qj|r t||}qt
t D ]}||	|  |d q,qt rt|} fddt|D }t||||ddg| dd|d gdtd
 ||fS )Nz3  Drawing metaQUAST summary misassemblies plot for r   x   r   r   r   r   center)r5   r9   r   )r5   r9   r6   c                    s   g | ]} | qS r#   r#   r   misassembliesr#   r$   r     rK   z8draw_meta_summary_misassemblies_plot.<locals>.<listcomp>Tr   F)rT   r   r   r   r   rm   )r   meta_loggerr   r   r   FieldsMIS_RELOCATIONMIS_TRANSLOCATIONMIS_INVERTIONr;   r   r   floatr0   r   r   r*   setr   r   )r  r  Z
contig_numrz   r   r   Zrefs_numlegend_nrM   r   r   r  r  r   yZto_plottype_misassemblyresultr   re   r#   r  r$   $draw_meta_summary_misassemblies_plot  sd     $

2
r$  c                    s  t sd S td g }t| }g }t|D ]||  tjj	 q*tjj
tjjtjjtjjgg }ttdt| d }g  g tt| D ]X dd ttD  dd ttD  d}	d}
t  dkrj|
tk rj|  |
 }|r`|dkr`t| |
< | d|
td	      |
< ||
 t|}	|
d7 }
qt|
tD ]r|   }|rx|dkrxt| < | dtd	      < | |	t|7 }	qxqttD ]^ fd
dt|D }fddt|D }|r|r|t||t ddd qtt| D ]
 rffddttD }fddttD }t|dkrfd}
||
 dkr|
d7 }
q| dtd	   }|t|||
 td ddd |
d7 }
t|
t D ]B| dkr,|t|| t ddt|d  d q,qft|}fddt|D }t||||dg| d|d gd d S )Nz(  Drawing misassemblies by types plot...r   c                 S   s   g | ]}d qS r   r#   r   r#   r#   r$   r     rK   z+draw_misassemblies_plot.<locals>.<listcomp>c                 S   s   g | ]}d qS r   r#   r   r#   r#   r$   r     rK   r   r   r   r]   c                    s(   g | ] } |  d kr |  qS r   r#   r   )r   r   r#   r$   r     rK   c                    s(   g | ] } |  d kr |  qS r   r#   r   r   r#   r$   r     rK   g?r  )r   r5   r9   c                    s   g | ]}  | qS r#   r#   r   r   r   r#   r$   r     rK   c                    s(   g | ] }  | d kr  | qS r   r#   r   r%  r#   r$   r      rK   )r   r5   r9   r6   c                    s   g | ]} | qS r#   r#   r   r  r#   r$   r   -  rK   r   )r   r   )r   rm   r   r   r   r   	get_fieldr   r  NAMEr  r  r  MIS_ISTRANSLOCATIONSr;   r  r0   r   r   r  r   r   )reportsrz   r   r   r   r  r  r   Z
main_arr_xr!  r"  r#  r  r   r  Zpoint_xre   r#   )r   r   r   r   r  r$   draw_misassemblies_plot  sr    
 $

$
 
 6r*  c              
      s  t rt|dkrd S d}d}d}d}d}|| }	t|}
ttd | | | }|
|	 d|  }|| t  }tj||fd	}tjdi t td t	dt d dt    dtd|	 |  | 
dd  t	dt d dt    d| |d dd  }dd |dd  D }dd |dd  D }tj||| fdd dd  D ddddd t| t  d S )Nr   g      (@r   g      $@r   g{Gz?r   r   )Zfigsizer|   offr]   r   rP   r  r  c                 S   s   g | ]}|d  qS r   r#   r   itemr#   r#   r$   r   Q  rK   z%draw_report_table.<locals>.<listcomp>c                 S   s   g | ]}|d d qS )r   Nr#   r,  r#   r#   r$   r   R  rK   c                    s   g | ]}t |t  qS r#   )r  r   )r   Zcolumn_widthcolumn_widthsr#   r$   r   T  rK   leftr  right)ZcellText	rowLabels	colLabelsZ	colWidthsZrowLocZcolLocZcellLocr^   )r|   )r   r   r  r|   r   r&   rw   r   Zaxistextr	  
capitalizetablero   r   ru   )report_name
extra_infotable_to_drawr/  Z	font_sizeZ
font_scaleZexternal_font_scaleZletter_height_coeffZletter_width_coeffZ
row_heightZnrowsZexternal_text_heightZtotal_heightZtotal_widthrw   r3  r2  Z
restValuesr#   r.  r$   draw_report_table1  s8    
 &

r:  c                 C   sV   t r| sd S ttr*td gtd d  atjrBtt| fgd nt|  g ag ad S )Nr   r   )r   r   ro   r   r   r   ry   rq   )rv   r#   r#   r$   fill_all_pdf_fileZ  s    r;  )F)FF)NF)r   N)r   r   NN)r   NNNNN)r   )r   r   )K
__future__r   r|   r(   r   secondary_line_stylerf   rS   r   rZ   r   r   r[   r   sys
quast_libsr   r   r   quast_libs.logr   r   quast_libs.qutilsr   r   r   Zquast_libs.plotter_datar   r   Zmain_loggerLOGGER_DEFAULT_NAMErm   LOGGER_META_NAMEr  r   
draw_plotsr@   Zuse__version__
startswithr   rn   stderropenZmatplotlib.pyplotZpyplotr&   Zmatplotlib.tickerrd   rq   ro   objectr   r0   rE   rO   rV   r\   rh   ry   r{   r   r   r   r   r   r   r   r   r   r  r$  r*  r:  r;  r#   r#   r#   r$   <module>   s   









%'D
?!%  
.  
E
O
9
A)