ó ë–+[c@s¨dZddlZddlZddlZy$ddlmZddlmZWn1ek rddlmZddlmZnXdZ dej ƒfd„ƒYZ dS(sJ .. module:: PipeLogger :synopsis: base logger customization for the analysis pipeline .. versionadded:: 3.0.0 .. versionchanged:: 3.0.0 This is a logger for the pipeline that extends the default Python logger class Copyright (c) 2016-2017, Evgeny Zdobnov (ez@ezlab.org) Licensed under the MIT license. See LICENSE.md file. iÿÿÿÿN(t NoOptionError(tNoSectionErrort PipeLoggercBsŒeZdZejZeZed d„ƒZ d„Z d„Z d„Z d„Zd„Zd„Zed„ƒZed „ƒZd „ZRS( s1 This class customizes the _logger class cCsyR|r*|jddƒr*tjt_n'|rQ|jddƒrQtjt_nWn!tk rentk runXtjtƒtj |ƒS(s! :param name: the name of the logger to be returned :type name: str :param config: the parameters of the analysis :type config: PipeConfig :return: a PipeLogger, new or existing, corresponding to the provided name :rtype: PipeLogger tbuscotquiettdebug( t getbooleantloggingtERRORRt_leveltDEBUGRRtsetLoggerClasst getLogger(tnametconfig((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pyt get_logger&s    cCs™tt|ƒj|ƒ|jtjƒtjdƒ|_tjdƒ|_t r]|j ƒn8tj t j ƒ|_|jj|jƒ|j|jƒdS(sh :param name: the name of the PipeLogger instance to be created :type name: str s%(levelname)s %(message)ss(%(levelname)s:%(threadName)s %(message)sN(tsuperRt__init__tsetLevelR Rt Formattert _formattert_thread_formattert run_dirpatht reload_logt StreamHandlertsyststdoutt _out_hdlrt setFormattert addHandler(tselfR ((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pyR=s cCsatd}x|jD]}|j|ƒqWtj|ddƒ}|jtjƒ|j|ƒdS(Ns.logtmodetw(Rthandlerst removeHandlerRt FileHandlerRR R(Rt _log_fpaththandlert file_handler((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pyROs  cCs|jj|jƒdS(su This function appends the thread name to the logs output, e.g. INFO:Analysis.py:thread_name N(RRR(R((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pytadd_thread_infoWscCs|jj|jƒdS(sj This function disables the thread name in the logs output, e.g. INFO:Analysis.py N(RRR(R((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pytremove_thread_info^scOs|j|||ŽdS(s~ This function overrides the _logger class warn :param msg: the message to log :type msg: str N(twarning(Rtmsgtargstkwargs((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pytwarnfscOs)tt_tt|ƒj|||ŽdS(s This function overrides the _logger class warning :param msg: the message to log :type msg: str N(tTrueRt _has_warningRR)(RR*R+R,((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pyR)os cCstjS(sW :return: whether any _logger did log warnings :rtype: boolean (RR/(((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pyt has_warningxscCs tt_dS(sE Reset the has warning flag to False for all _logger N(tFalseRR/(((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pyt reset_warning€scOs0|dkr,|jd||f||ŽndS(sß This function logs an info line mentioning this is an external tool :param tool: the name of the tool :type tool: str :param msg: the message :type msg: str :return: ts[%s] %sN(tinfo(RttoolR*R+R,((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pytinfo_external_tool‡s N(t__name__t __module__t__doc__RtINFOR R1R/t staticmethodtNoneRRRR'R(R-R)R0R2R6(((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pyRs      ( R9RRtost configparserRRt ImportErrort ConfigParserR<RtgetLoggerClassR(((sT/home/psgendb/BIRCHDEV/install/quast-5.2.0/quast_libs/busco/pipebricks/PipeLogger.pyts