>RPSB_BACSU RNA POLYMERASE SIGMA-B FACTOR (SIGMA-37).
MTQPSKTTKL TKDEVDRLIS DYQTKQDEQA QETLVRVYTN LVDMLAKKYS 
KGKSFHEDLR QVGMIGLLGA IKRYDPVVGK SFEAFAIPTI IGEIKRFLRD 
KTWSVHVPRR IKELGPRIKM AVDQLTTETQ RSPKVEEIAE FLDVSEEEVL 
ETMEMGKSYQ ALSVDHSIEA DSDGSTVTIL DIVGSQEDGY ERVNQQLMLQ 
SVLHVLSDRE KQIIDLTYIQ NKSQKETGDI LGISQMHVSR LQRKAVKKLR 
EALIEDPSME LM

>RPC2_LAMBD REGULATORY PROTEIN CII.
MVRANKRNEA LRIESALLNK IAMLGTEKTA EAVGVDKSQI SRWKRDWIPK 
FSMLLAVLEW GVVDDDMARL ARQVAAILTN KKRPAATERS EQIQMEF

>CRP_ECOLI CATABOLITE GENE ACTIVATOR (CAMP RECEPTOR PROTEIN).
MVLGKPQTDP TLEWFLSHCH IHKYPSKSTL IHQGEKAETL YYIVKGSVAV 
LIKDEEGKEM ILSYLNQGDF IGELGLFEEG QERSAWVRAK TACEVAEISY 
KKFRQLIQVN PDILMRLSAQ MARRLQVTSE KVGNLAFLDV TGRIAQTLLN 
LAKQPDAMTH PDGMQIKITR QEIGQIVGCS RETVGRILKM LEDQNLISAH 
GKTIVVYGTR 

>RCRO_LAMBD REGULATORY PROTEIN CRO.
MEQRITLKDY AMRFGQTKTA KDLGVYQSAI NKAIHAGRKI FLTINADGSV 
YAEEVKPFPS NKKTTA

>RCRO_BPP22 REGULATORY PROTEIN CRO.
MYKKDVIDHF GTQRAVAKAL GISDAAVSQW KEVIPEKDAY RLEIVTAGAL 
KYQENAYRQA A

>DEOR_ECOLI DEOXYRIBOSE OPERON REPRESSOR.
METRREERIG QLLQELKRSD KLHLKDAAAL LGVSEMTIRR DLNNHSAPVV 
LLGGYIVLEP RSASHYLLSD QKSRLVEEKR RAAKLAATLV EPDQTLFFDC 
GTTTPWIIEA IDNEIPFTAV CYSLNTFLAL KEKPHCRAFL CGGEFHASNA 
IFKPIDFQQT LNNFCPDIAF YSAAGVHVSK GATCFNLEEL PVKHWAMSMA 
QKHVLVVDHS KFGKVRPARM GDLKRFDIVV SDCCPEDEYV KYAQTQRIKL 
MY

>RPSK_BACSU RNA POLYMERASE SIGMA-K FACTOR PRECURSOR (SIGMA-27).
MVTGVFAALG FVVKELVFLV SYVKNNAFPQ PLSSSEEKKY LELMAKGDEH 
ARNMLIEHNL RLVAHIVKKF ENTGEDAEDL ISIGTIGLIK GIESYSAGKG 
TKLATYAARC IENEIVITKG GCIHPSLIRF NIYGVRIHNG NFFHDKVNNC 
FFIFKSMPPL FVMNNEILMH LRALKKTKKD VSLHDPIGQD KEGNEISLID 
VLKSENEDVI DTIQLNMELE KVKQYIDILD DREKEVIVGR FGLDLKKEKT 
QREIAKELGI SRSYVSRIEK RALMKMFHEF YRAEKEKRKK AKGK

>TER2_ECOLI TETRACYCLINE REPRESSOR PROTEIN CLASS B (TRANSPOSON TN10).
MSRLDKSKVI NSALELLNEV GIEGLTTRKL AQKLGVEQPT LYWHVKNKRA 
LLDALAIEML DRHHTHFCPL EGESWQDFLR NNAKSFRCAL LSHRDGAKVH 
LGTRPTEKQY ETLENQLAFL CQQGFSLENA LYALSAVGHF TLGCVLEDQE 
HQVAKEERET PTTDSMPPLL RQAIELFDHQ GAEPAFLFGL ELIICGLEKQ 
LKCESGS

>TRPR_ECOLI TRP OPERON REPRESSOR.
AQQSPYSAAM AEQRHQEWLR FVDLLKNAYQ NDLHLPLLNL MLTPDEREAL 
GTRVRIVEEL LRGEMSQREL KNELGAGIAT ITRGSNSLKA APVELRQWLE 
EVLLKSD

>NIFA_KLEPN NIF-SPECIFIC REGULATORY PROTEIN.
MIHKSDSDTT VRRFDLSQQF TAMQRISVVL SRATEASKTL QEVLSVLHND 
AFMQHGMICL YDSQQEILSI EALQQTEDQT LPGSTQIRYR PGEGLVGTVL 
AQGQSLVLPR VADDQRFLDR LSLYDYDLPF IAVPLMGPHS RPIGVLAAHA 
MARQEERLPA CTRFLETVAN LIAQTIRLMI LPTSAAQAPQ QSPRIERPRA 
CTPSRGFGLE NMVGKSPAMR QIMDIIRQVS RWDTTVLVRG ESGTGKELIA 
NAIHHNSPRA AAAFVKFNCA ALPDNLLESE LFGHEKGAFT GAVRQRKGRF 
ELADGGTLFL DEIGESSASF QAKLLRILQE GEMERVGGDE TLRVNVRIIA 
ATNRHLEEEV RLGHFREDLY YRLNVMPIAL PPLRERQEDI AELAHFLVRK 
IAHSQGRTLR ISDGAIRLLM EYSWPGNVRE LENCLERSAV LSESGLIDRD 
VILFNHRDNP PKALASSGPA EDGWLDNSLD ERQRLIAALE KAGWVQAKAA 
RLLGMTPRQV AYRIQIMDIT MPRL

>DNIV_ECOLI DNA-INVERTASE PIN.
MLIGYVRVST NDQNTDLQRN ALNCAGCELI FEDKISGTKS ERPGLKKLLR 
TLSAGDTLVV WKLDRLGRSM RHLVVLVEEL RERGINFRSL TDSIDTSTPM 
GRFFFHVMGA LAEMERELIV ERTKAGLETA RAQGRIGGRR PKLTPEQWAQ 
AGRLIAAGTP RQKVAIIYDV GVSTLYKTFP AGDK

>LEXA_ECOLI LEXA REPRESSOR (EC 3.4.21.88).
MKALTARQQE VFDLIRDHIS QTGMPPTRAE IAQRLGFRSP NAAEEHLKAL 
ARKGVIEIVS GASRGIRLLQ EEEEGLPLVG RVAAGEPLLA QQHIEGHYQV 
DPSLFKPNAD FLLRVSGMSM KDIGIMDGDL LAVHKTQDVR NGQVVVARID 
DEVTVKRLKK QGNKVELLPE NSEFKPIVVD LRQQSFTIEG LAVGVIRNGD 
WL

>NAHR_PSEPU TRANSCRIPTIONAL ACTIVATOR PROTEIN NAHR.
MELRDLDLNL LVVFNQLLVD RRVSITAENL GLTQPAVSNA LKRLRTSLQD 
PLFVRTHQGM EPTPYAAHLA EPVTSAMHAL RNALQHHESF DPLTSERTFT 
LAMTDIGEIY FMPRLMDVLA HQAPNCVIST VRDSSMSLMQ ALQNGTVDLA 
VGLLPNLQTG FFQRRLLQNH YVCLCRKDHP VTREPLTLER FCSYGHVRVI 
AAGTGHGEVD TYMTRVGIRR DIRLEVPHFA AVGHILQRTD LLATVPIRLA 
DCCVEPFGLS ALPHPVVLPE IAINMFWHAK YHKDLANIWL RQLMFDLFTD 

>HMAN_DROME HOMEOTIC ANTENNAPEDIA PROTEIN.
MTMSTNNCES MTSYFTNSYM GADMHHGHYP GNGVTDLDAQ QMHHYSQNAN 
HQGNMPYPRF PPYDRMPYYN GQGMDQQQQH QVYSRPDSPS SQVGGVMPQA 
QTNGQLGVPQ QQQQQQQQPS QNQQQQQAQQ APQQLQQQLP QVTQQVTHPQ 
QQQQQPVVYA SCKLQAAVGG LGMVPEGGSP PLVDQMSGHH MNAQMTLPHH 
MGHPQAQLGY TDVGVPDVTE VHQNHHNMGM YQQQSGVPPV GAPPQGMMHQ 
GQGPPQMHQG HPGQHTPPSQ NPNSQSSGMP SPLYPWMRSQ FGKCQERKRG 
RQTYTRYQTL ELEKEFHFNR YLTRRRRIEI AHALCLTERQ IKIWFQNRRM 
KWKKENKTKG EPGSGGEGDE ITPPNSPQ

>ARAC_ECOLI ARABINOSE OPERON REGULATORY PROTEIN.
MAEAQNDPLL PGYSFNAHLV AGLTPIEANG YLDFFIDRPL GMKGYILNLT 
IRGQGVVKNQ GREFVCRPGD ILLFPPGEIH HYGRHPEARE WYHQWVYFRP 
RAYWHEWLNW PSIFANTGFF RPDEAHQPHF SDLFGQIINA GQGEGRYSEL 
LAINLLEQLL LRRMEAINES LHPPMDNRVR EACQYISDHL ADSNFDIASV 
AQHVCLSPSR LSHLFRQQLG ISVLSWREDQ RISQAKLLLS TTRMPIATVG 
RNVGFDDQLY FSRVFKKCTG ASPSEFRAGC EEKVNDVAVK LS

>FNR_ECOLI FUMARATE AND NITRATE REDUCTION REGULATO
MIPEKRIIRR IQSGGCAIHC QDCSISQLCI PFTLNEHELD QLDNIIERKK 
PIQKGQTLFK AGDELKSLYA IRSGTIKSYT ITEQGDEQIT GFHLAGDLVG 
FDAIGSGHHP SFAQALETSM VCEIPFETLD DLSGKMPNLR QQMMRLMSGE 
IKGDQDMILL LSKKNAEERL AAFIYNLSRR FAQRGFSPRE FRLTMTRGDI 
GNYLGLTVET ISRLLGRFQK SGMLAVKGKY ITIENNDALA QLAGHTRNVA 

>DICA_ECOLI REPRESSOR PROTEIN OF DIVISION INHIBITION GENE DICB.
METKNLTIGE RIRYRRKNLK HTQRSLAKAL KISHVSVSQW ERGDSEPTGK 
NLFALSKVLQ CSPTWILFGD EDKQPTPPVE KPVALSPKEL ELLELFNALP 
ESEQDTQLAE MRARVKNFNK LFEELLKARQ RTNKR

>FIS_ECOLI FACTOR-FOR-INVERSION STIMULATION PROTEIN (HIN RECOMBINATIONAL ENHANCE
MFEQRVNSDV LTVSTVNSQD QVTQKPLRDS VKQALKNYFA QLNGQDVNDL 
YELVLAEVEQ PLLDMVMQYT RGNQTRAALM MGINRGTLRK KLKKYGMN

>MTA1_YEAST MATING-TYPE PROTEIN A1.
MDDICSMAEN INRTLFNILG TEIDEINLNT NNLYNFIMES NLTKVEQHTL 
HKNISNNRLE IYHHIKKEKS PKGKSSISPQ ARAFLEQVFR RKQSLNSKEK 
EEVAKKCGIT PLQVRVWFIN KRMRSK

>S20081 csvR protein - Escherichia coli
MDFKYTEEKE LIKINNVMIH KYTILYTSNC ILDISFGEDK ITCFNNRLVF 
LERGVNISVR IQKQKLTEKP YVAFRLNENV LRHLKNTLMI IYGMSKIDSC 
ECRGVSRKIM TTEVDKMLLN VLREMMGHHN DDSSFISALI YLISKIKCND 
KIIESLYMSS ITFFTDKVRG VIEKDLSRKW TLAIIADVFN VSEITIRKRL 
ESEDTNFNQI LMQSRMSKAA LLLLENSYQI SQISNMIGIS SASYFIRIFN 
KHFGVTRSSF LIILKEDENV FATRQGNSSL TQLTCEFKHI SGGNRLNRCT 
E

>ARSR_STAAU ARSENICAL RESISTANCE OPERON REPRESSOR 
MSYKELSTIL KILSDSSRLE ILDLLSCGEL CACDLLEHFQ FSQPTLSHHM 
KSLVDNELVT TRKDGNKHWY QLNHAILDDI IQNLNIINTS NQRCVCKNVK 
SGDC

>CADC_STAAU CADMIUM EFFLUX SYSTEM ACCESSORY PROTEI
MKKKDTCEIF CYDEEKVNRI QGDLQTVDIS GVSQILKAIA DENRAKITYA 
LCQDEELCVC DIANILGVTI ANASHHLRTL YKQGVVNFRK EGKLALYSLG 
DEHIRQIMMI ALAHKKEVKV NV

>NOLR_RHIME NODULATION PROTEIN NOLR.
MNFRMEHTMQ PLPPEKHEDA EIAAGFLSAM ANPKRLLILD SLVKEEMAVG 
ALAHKVGLSQ SALSQHLSKL RAQNLVSTRR DAQTIYYSSS SDAVLKILGA 
LSDIYGDDTD AVEEKPLVRK SA

>ASNC_ECOLI REGULATORY PROTEIN ASNC.
MENYLIDNLD RGILEALMGN ARTAYAELAK QFGVSPGTIH VRVEKMKQAG 
IITGARIDVS PKQLGYDVGC FIGIILKSAK DYPSALAKLE SLDEVTEAYY 
TTGHYSIFIK VMCRSIDALQ HVLINKIQTI DEIQSTETLI VLQNPIMRTI 
KP

>LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN.
MVDSKKRPGK DLDRIDRNIL NELQKDGRIS NVELSKRVGL SPTPCLERVR 
RLERQGFIQG YTALLNPHYL DASLLVFVEI TLNRGAPDVF EQFNTAVQKL 
EEIQECHLVS GDFDYLLKTR VPDMSAYRKL LGETLLRLPG VNDTRTYVVM 
EEVKQSNRLV IKTR

>ECOICLRA_2 repressor of the aceBAK oper
MKMISTIQKK ETVMVAPIPA KRGRKPAVAT APATGQVQSL TRGLKLLEWI 
AESNGSVALT ELAQQAGLPN STTHRLLTTM QQQGFVRQVG ELGHWAIGAH 
AFMVGSSFLQ SRNLLAIVHP ILRNLMEESG ETVNMAVLDQ SDHEAIIIDQ 
VQCTHLMRMS APIGGKLPMH ASGAGKAFLA QLSEEQVTKL LHRKGLHAYT 
HATLVSPVHL KEDLAQTRKR GYSFDDEEHA LGLRCLAACI FDEHREPFAA 
ISISGPISRI TDDRVTEFGA MVIKAAKEVT LAYGGMR


>S28677 hypothetical protein 4 - Rhizobium sp. (s
MSLQLVTGHQ SRVAAAVPFA AEKQDLSSLF DAQPVERFTP AAAVFWEGDQ 
ARHIFEVVEG TLRAVRILND GRRVIIGFLR PGDLLGVSVK EHYLYTVEAI 
THVELRRFSR RRFESESARA PHLREQLFSR LCDEMAAAQD QMVLLSRRSA 
EEKVAGFLLM MARGQSENRR PVIELPMTRL DVADYLGMTI ETVSRTITKL 
AGSGVIAIVG RHAIAILKMD ALIALADGEC DDGAQRSARY AKA

>CYSR_SYNP7 REGULATORY PROTEIN CYSR.
MVREPASTLL PPTSPATPAP HRLLIGRRGM VPTGANVIWK IQSGLVRSST 
WGEEGDMISL GLWGPGDLIG RPLSCLDPYE LECLTAVEVV AVSDPALESH 
ESLVRSLRYT ERLLSITRLR RAEAKLASLL GWIGERFGQP GATGWEIDLR 
RIPLTHQVIA ELSGSTRVTT TRLLGEFRQA GRIHRRDRAL IVRYPETLYP 
PARLSA

>FLP_LACCA PROBABLE TRANSCRIPTIONAL REGULATOR FLP.
MAHSCTAVVP LFKNLNDEAR AAIDALTHER QVEKGTVLIS PDTAAHLLVV 
AHGKLKTYQL ATNGKEQLLR VDGVGDYEGE AGLLNIANPN VYTETLTAAT 
VCTISATDFQ QLLLKQPQIS LQLLTENARK MQALEKQAGY LGNDSINVRL 
THYLLDLRTA AGQDTVTVPM AWTQLADYLG TTPETVSRTL KRLAEEKLIE 
RSGKQVRILN AEDMEDFAW

>FUCR_ECOLI L-FUCOSE OPERON ACTIVATOR.
MKAARQQAIV DLLLNHTSLT TEALSEQLKV SKETIRRDLN ELQTQGKILR 
NHGRAKYIHR QNQDSGDPFH IRLKSHYAHK ADIAREALAW IEEGMVIALD 
ASSTCWYLAR QLPDINIQVF TNSHPICHEL GKRERIQLIS SGGTLERKYG 
CYVNPSLISQ LKSLEIDLFI FSCEGIDSSG ALWDSNAINA DYKSMLLKRA 
AQSLLLIDKS KFNRSGEARI GHLDEVTHII SDERQVATSL VTA

>GATR_ECOLI GALACTITOL UTILIZATION OPERON REPRESSO
MTMNSFERRN KIIQLVNEQG TVQVQDLAGV FAASEATIRA DLRFLEQKGV 
VTRFHGGAAK IMSGNSETET QEVGFKERFQ LASAPKNRIA QAAVKMIHEG 
MTVILDSGST TMLIVPKIMT AKNITVITNS LPAAFALSEN KDITLVVCCG 
TVRHKTRSMH GSIAERSLQD INADLMFVGA DGIDAVNGI

>ECOUW93_103 Escherichia coli K-12 chrom
MTEAQRHQIL LEMLAQLGFV TVEKVVERLG ISPATARRDI NKLDESGKLK 
KVRNGAEAIT QQRPRWTPMN LHQAQNHDEK VRIAKAASQL VNPGESVVIN 
CGSTAFLLGR EMCGKPVQII TNYLPLANYL IDQEHDSVII MGGQYNKSQS 
ITLSPQGSEN SLYAGHWMFT SGKGLTAEGL YKTDMLTAMA EQKMLSVVGK 
LVVLVDSSKI GERAGMLFSR ADQIDMLITG KNANPEILQQ LEAQGVSILR 
V

>PHNF_ECOLI PHNF PROTEIN.
MHLSTHPTSY PTRYQEIAAK LEQELRQHYR CGDYLPAEQQ LAARFEVNRH 
TLRRAIDQLV EKGWVQRRQG VGVLVLMRPF DYPLNAQARF SQNLLDQGSH 
PTSEKLLSVL RPASGHVADA LGITEGENVI HLRTLRRVNG VALCLIDHYF 
ADLTLWPTLQ RFDSGSLHDF LREQTGIALR RSQTRISARR AQAKECQRLE 
IPNMSPLLCV RTLNHRDGES SPAEYSVSLT RADMIEFTME H

>S01288 regulatory protein fadR - Escherichia col
MVIKAQSPAG FAEEYIIESI WNNRFPPGTI LPAERELSEL IGVTRTTLRE 
VLQRLARDGW LTIQHGKPTK VNNFWETSGL NILETLARLD HESVPQLIDN 
LLSVRTNIST IFIRTAFRQH PDKAQEVLAT ANEVADHADA FAELDYTIFR 
GLAFASGNPI YGLILNGMKG LYTRIGRHYF ANPEARSLAL GFYHKLSALC 
SEGAHDQVYE TVRRYGHESG EIWHRMQKNL PGDLAIQGR

>YIHL_ECOLI HYPOTHETICAL 26.9 KD PROTEIN IN GLNA-F
MAENQSTVEN AKEKLDRWLK DGITTPGGKL PSERELGELL GIKRMTLRQA 
LLNLEAESKI FRKDRKGWFV TQPRFNYSPE LSASFQRAAI EQGREPSWGF 
TEKNRTSDIP ETLAPLIAVT PSTELYRITG WGALEGHKVF YHETYINPEV 
APGFIEQLEN HSFSAVWEKC YQKETVVKKL IFKPVRMPGD ISKYLGGSAG 
MPAILIEKHR ADQQGNIVQI DIEYWRFEAV DLIINL

>YIN1_STRAM HYPOTHETICAL 26.1 KD PROTEIN IN INSTAB
MAQTNGRTNR RDIYLKLRQM VLTLELAPGA ALSENELAAS MGVSRTPVRE 
SLILLAQEGL VQVFPKIGSF VSRVDPARVA DAQFLREAVE LGSLDALPAE 
LDPAVVGELR DNLVRQGRKD LDLEEFFGLD EAFHQGLMRL SGHGNVWTTV 
AAAKGHLDRA RRLGLHENVS PAVFVAQHRE IFDAVTEGDV PLARTAMRTH 
LRAVFDDIER IRAHSPELFA TDAATVPVRR NIVVWE

>YRDX_RHOSH HYPOTHETICAL 48.1 KD PROTEIN IN RDXA 3
MWRPHLVDTA RLKYLGIVDA LEADIRAGRV TPGERLPPQR AIAEALGVDL 
TTVTRALNEA QRRGLVSAQV GRGTFVRDEP AGDEGGGTPL DLSMNIPPQP 
AEPDLRRILP QGIASILTSP RGTLAMHYQE STGAPADRTA AASWLAGRVA 
GASADRIVVT SGAQAALFAL CALLLGRGDV VAAGAVTYPG LKAVAAQQHL 
ELAPVAMDEQ GILPEAFEAV CRERAPKLLY LIPSIDNPTT ATLPADRRRE 
VAAVARRHGV LLIEDDPYAP LRSERLPALA ELAPELTWHI ATLSKCSTPA 
LRIAYVLAPN AAAAVRLATV LRSSVLMAPP IFAALATRWI TDGTLTALAS 
AIRAENRQRQ SSAASIFSGL DFAADPDGHH LWLHLPQRWR AAEFADHAER 
AGLAIVPASA FAVSPHPAEA VRISLGIAPD RGMLEEGLTQ LSGLLTQPAV 
GSRAVV

>S43169 mocR protein - Rhizobium meliloti
MLVLDRDADV PMHRQLYEKL RAEILAGHLK ADTRLPPTRM MAEDLGVSRN 
TVITTYDALL AEGYLESRSG SGTWVATLPP DAVTARNSVG RAGAPSLSSR 
GMRMAAQPRD RTIPDRIAFH PGYPEIKAFP FSTWARLLKR HARYSHEDLY 
GYHWVTGHPR LKAAIAEYLR ASRGVECAPE QVIVVNGTQA ALDILARMLV 
DEGDICWMEE PGYIGAQNSL LSAGAKLVPL PVERDGWSLE DETRPSPRLI 
FVTPSCQWPL GCLMRMEDRL RLLQIGERHD AWIVEDDYDS EYRFRGRPVP 
AMQGLDKSGR VIYMGTFAKT LFPSLRIGFI VVPPQLADGF KRVVSNTGHY 
PSLLLQAALA DFISEGYFAT HLRRMRRLYA ERQKVFVALC RRHLADWLTI 
DENDAGMQLV ARFTRALEDE VLWRAAQGQG VNFSPLSRQF FHSPPQQGAI 
LGYAGIDPKT MREGINSLRS AFLALESSGA LPLDRATAAP RGC

>GNTR_BACSU GLUCONATE OPERON TRANSCRIPTIONAL REPRE
MLDSKDLLYP AKWLSKASTG VRVAYELRMR IVSGLIESGT ILSENTIAAE 
FSVSRSPVRE ALKILASEKI IRLERMGAVV IGLTEKKIAE IYDVRLLLET 
FVFERLVKID IEPLVKDLSK ILEMMKVSIK YEDADEFSFQ DVLFHETIIR 
AIDHSYIQMI WNNLKPVMES FILLSMRVRL KEKYEDFTRI LDNHELYIQA 
IKTKDRALMI QSLHQNFDDV QDKVEDLWLS QQMLAKGAEY NND

>SCRR_VIBAL SUCROSE (SCR) OPERON REPRESSOR PROTEIN
MASLHDVARL AGVSKSTVSR VINDEYGVKE ATKQKVRQAV AECGYVPNQV 
AKDLKEESSA IIVQDKTGKV LFVKEGALEQ DEIAKVIELI KQNI

>SCRR_KLEPN SUCROSE (SCR) OPERON REPRESSOR PROTEIN
MKTKRVTIKD IAELAGVSKA TASLVLNGRG KELRVAQETR ERVLAIAREQ 
HYQPSIHARS LRDNRSHTIG LVVPEITNYG FAVFSHELET LCREAGVQLL 
ISCTDENPGQ ESVVVNNMIA RQVDGLIVAS CMHSDADYQK LSEQLPVVLF 
DRSPSDSALP LVMTDSVTPT AELISRIAPQ HADEFWFLGG QPRLSPSRDR 
LAGFTQGLAQ AGITLRPEWV INGNYHPSSG YEMFAALCAR LGRPPKALFT 
AACGLLEGVL RYMSQHHLLD SNIHLASFDD HYLYDSLSLR IDTVQQDNRQ 
LAWHCYDLLS QLIDGQAPEP LQRYLPATLQ IRHP

>S21353 hypothetical protein - Streptomyces livid
MTRRLAQVAK KVGVSEATVS RVLNGKPGVS ETTRQSVLSA LDVLGYERPT 
QLRGERARLV GLVLPELQNP IFPAFAEVIG GALAQQGLTP VLCTQTKGGV 
SEADYVELLL QQQVSGVVFA GGGLFAQADA PHDHYRLLAE RNIPVVLVNA 
SIPDLGFPCI ACDDAVAVEQ SWRHLTSLGH ERIGLVLGPS DHIPSRRKLT 
AAREAAQASN GTLPDAHVER AMFSLEGGQA AATRLLDRGI TGIICASDPL 
ALGAVRAARR RGHRVPHDVS VVGYDDSAFM TCTEPPLTTV RQPIEAMGRA 
AVDLLCAQIQ GTEVPHRELL FEPELVVRGS TAQVSTR

>NFXB_PSEAE TRANSCRIPTIONAL REGULATORY PROTEIN NFX
MTLISHDERL IKALAVAIVD RPRATLKELA EAAGVSKATL HRFCGTRDNL 
VQMLEDHGET VLNQIIQACD LEHAEPLEAL QRLIKEHLTH RELLVFLVFQ 
YRPDFLDPHG EGARWQSYLE ALDEFFLRGQ QKGVFRIDIT AAVFTELFIT 
LVYGMVDAER RGRAASSNSA HTLEQMFLHG ASNPARS

>RAFR_ECOLI RAFFINOSE OPERON REPRESSOR.
SLKAIATTLG ISVTTVSRAL GGFSDVAAST RERVEAEARR RGYRPNTQAR 
RLKTGKTDAI GLVYPENDVP FNSGVFMDMV SCISRELAYH DIDLLLIADD 
EHADCHSYMR LVESRRIDAL IIAHTLDDDP RITHLHKAGI PFLALGRVPQ 
GLPCAWFDFD NHAGTWQATQ KLIALGHKSI ALLSENTSHS YVIARRQGWL 
DALHEHGLKD PLLRLVSPTR RAGYLAVMEL MSLPAPPTAI ITDNDLSGDG 
AAMALQLRGR LSGKEAVSLV VYDGLPQDSI IELDVAAVIQ STRSLVGRQI 
SDMVYQIING ASPESLQITW TPIFYPGSTV HSPSF

>STMGLNR_2 Streptomyces coelicolor trans
MAKVTRDDVA RLAGTSTAVV SYVINNGPRP VAPATRERVL AAIKELGYRP 
DRVAQAMASR RTDLIGL

>REMA_STAAU REPLICATION AND MAINTENANCE PROTEIN.
MKERYGTVYK GSQRLIDEES GEVIEVDKLY RKQTSGNFVK AYIVQLISML 
DMIGGKKLKI VNYILDNVHL SNNTMIATTR EIAKATGTSL QTVITTLKIL 
EEGNIIKRKT GVLMLNPELL MRGDDQKQKY LLLEFGNFEQ EANEKQENAL 
SDYYSFKD

>YSY1_SYNP7 HYPOTHETICAL 7.6 KD PROTEIN IN SYNA 5'
MTMLMHNPPH PGEIIKELCL EPLGISITEA AAALGVSRKT LSAILNGHAG 
ISPEMAIRLD SPLPLTPRQR AG

>VPB_BPMU DNA TRANSPOSITION PROTEIN.
MNISDIRAGL RTLVENEETT FKQIALESGL STGTISSFIN DKYNGDNERV 
SQMLQRWLEK YHAVAELPEP PRFVETQTVK QIWTSMRFAS LTESIAVVCG 
NPGVGKTEAA REYRRTNNNV WMITITPSCA SVLECLTELA FELGMNDAPR 
RKGPLSRALR RRLEGTQGLV IIDEADHLGA EVLEELRLLQ ESTRIGLVLM 
GNHRVYSNMT GGNRTVEFAR LFSRIAKRTA INKTKKADVK AIADAWQING 
EKELELLQQI AQKPGALRIL NHSLRLAAMT AHGKGERVNE DYLRQAFREL 
DLDVDISTLL RN

>CGPXZ_4 C.glutamicum plasmid (pXZ10142)
VPSTAGAPPT RNESKDLSMT KRTRIPRNGK TIREVAEGTG LSTATIERWT 
SAPREDYLAQ ANEKRVRVQE LRAKGLSMRA IAAEIGCSVG LVHRYVKEVE 
EKKTA

>RP54_AZOVI RNA POLYMERASE SIGMA-54 FACTOR.
MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LDSNPMLERQ 
EDAEDYDSPD MLGEHGDQST LDTTPGSYQE GYESGAASED GGTLEEGDWH 
ERIPSELPVD TAWEDIYQTS ASNLPSTDED EWDFTTRTST GESLQSHLLW 
QLNLTPMSDT DRLIAVTLID SINSDGYLEA ALEEILASLD PELGVELDEV 
EMVLRRIQQF EPAGIAARDL SESLLLQLRQ LPPDTPWLEE AKRLAKDYLD 
LLGNRDFTQL MRRMKLKEEE LRPVIELIQS LNPRPGAQIE SSEPEYVVPD 
VIVRKHNDRW LVELNQEAVP RLRINPHYAG FIRRADASAD NTFMRNQLQE 
ARWFIKSLQS RNETLMKVST QIVEHQRGFL DYGEEAMKPL VLHDIAEAVG 
MHESTISRVT TQKYMHTPRG IYELKYFFSS HVSTAEGGEC SSTAIRAIIK 
KLIAAENPKK PLSDSKIAGL LEEQGIQVAR RTVAKYRESL SIAPSSERKR 
LM

>VR2B_BPT4 RIIB PROTEIN (FRAGMENTS).
MYNIKCLTKN EQAEIVKLYS SGNYTQQELA DWQGVSVDTI RRVLKNAEEA 
KRPKVTISGD ITVKVNSDAV IAPVAKSDII WNASKKFISI TVDGVTYNAT 
PNTHSNFQEI LNLLVADKLE EAAQKINVRR AVEKYISGDV RIEGGSSLFY 
QNIELRSGLV DRILDSMEKG ENFEFYFPFL ENLLENPSQK AVSRLFDFLV 
ANDIEITEDG YFYAWKVVRS NYFDCHSNTF DNSPGKVVKM PRTRVNDDDT 
QTCSRGLHVC SKSYIRHFGS STSRVVKVKV HPRDVVSIPI DYNDAKMRTC 
QYEVVEDVTE QFK

>NADR_ECOLI TRANSCRIPTIONAL REGULATOR NADR (FRAGME
MSSFDYLKTA IKQQGCTLQQ VADASGMTKG YLSQLLNAKI KSPSAQKLEA 
LHRFLGLEFP RQKKTIGVVF GKFYPLHTGH IYLIQRACSQ VDELHIIMGF 
DDTRDRALFE DSAMSQQPTV PD

>PHREP_2 RepB gene product [Pediococcus 
MPKTIRELAD ELGVSKQRIQ QIIAKLSPSK TPNKEGNRYV LSAQDVKNIK 
ALMGFENNKS STSESTNRLV DYDVYLDVID SIKEKDEQIK SLLEVQKQTQ 
NLLDQQQRLA LQDKKLLEEY KTEIKELKSL NIPKQGSEKD DSIPKENSAE 
NRVKEPQNKK WWHFGRRM

>MLER_LACLA MALOLACTIC FERMENTATION SYSTEM TRANSCR
MSLNLRDLEY FYQLSKLRSF TNVAKHFRVS QPTISYAIKR LETYYDCDLF 
YKDSSHQVVD LTPEGELLAM RTNEILSELN HTKKAIHRSS MKDFKVGFPP 
IISSYLLSKQ DNLNFFNALH MIYGGSNELL SLLLNEEIDS SLLGSLEKIK 
HPQLEIEELF QKEFFIIMSD SHPLANEKEL GFKDLLNEDF ILLGEHNIHF 
NAFNRLNEKY NQSANVVLKL DDAHTIKELV RKNLGISLMA DIRLSEDFKN 
LVKVPFIEED KQFFHINYAY QKNSILSESE KNFLEILKTL K

>ICIA_ECOLI CHROMOSOME INITIATION INHIBITOR.
MKRPDYRTLQ ALDAVIRERG FERAAQKLCI TQSAVSQRIK QLENMFGQPL 
LVRTVPPRPT EQGQKLLALL RQVELLEEEW LGDEQTGSTP LLLSLAVNAD 
SLATWLLPAL APVLADSPIR LNLQVEDETR TQERLRRGEV VGAVSIQHQA 
LPSCLVDKLG ALDYLFVSSK PFAEKYFPNG VTRSALLKAP VVAFDHLDDM 
HQAFLQQNFD LPPGSVPCHI VNSSEAFVQL ARQGTTCCMI PHLQIEKELA 
SGELIDLTPG LFQRRMLYWH RFAPESRMMR KVTDALLDYG HKVLRQD

>A48990 SnpR=transcriptional regulator LysR famil
MELEVRHLRA LCAIADAGSL HRAARRLGVA QPTLSTQLTR IEQALGGPLF 
TRERTGCRPT PLGRTVLGRA RPLLTDMNTL VREARAAAAG GDSRLRVGST 
ASRALAGWLR RLRRPGLEPT LQMDVSANAL VRRVTDGQLD VAFVHEVEGC 
ALHIPEDLRL RVLVEREPQF VMLPADHPAA ARPVVRLADL ADDRWMVDPT 
VDGEWDGVHR MLRAVGLNPR VLHGDYHAAA SLVATGEVVT VCQPSSQSRP 
DTAVRRLYGD PLGVRLLLAG TRAELDAVFP ALEDAYWEAA RQSTAYREWL 
EGGGIRTLPR CPVAATGGGR VSCGRAEGSR SRRPRDVAPP RPIG



>NHAR_ECOLI TRANSCRIPTIONAL ACTIVATOR PROTEIN NHAR.
MSMSHINYNH LYYFWHVYKE GSVVGAAEAL YLTPQTITGQ IRALEDALQA 
KLFKRKGTWS RTQRAGELVY RYADKMFTLS QEMLDIVNYR KESNLLFDVG 
VADALSKRLV SSVLNAAVVE GEPIHLRCFE STHEMLLEQL SQHKLEMIIS 
DCPIDSTQQE GLFSVRIGEC GVSFWCTNPP PEKPFPACLE ERRLLIPGRR 
SMLGRKLLNW FNSQGLNVEI LGEFDDAALM KAWLQVLLVA MQMQSSLPQR 
FMHMTFMPIK LS

>SYONIRB_3 ntcB gene product [Synechococ
MRLEQLQAAL RVAETGSFQE AAQKVGCNQS TISRQVKGLE DELGIALFRR 
QGRMKLTAAG ERLLPRLRRI CQEWQTACTE IEELLTGRQT ELCMAIADSI 
GGCYLPAVLN RFQQQWPSIH LRVSTLGSDR ALKVLRDGLI DLAIVMDSPT 
LTTSAGLVVD LLLEEEVQVL LSVDHPLADQ KAIAWEQLSH VPQVVFKDGY 
GMQRLVEQRF RELGLELNSC LELNSLDSFR GVVREGYWLA LLPQAALVDA 
RHDPRLVIRP TAEPRLTRRI KLVIPEEQLS LPPVRHFRQL CREAMTAELC 
DFKTLSQLF

>GBPR_AGRTU GALACTOSE BINDING PROTEIN REGULATOR.
MSHLRMLVMI EEHGQVSAAA AAMNMTQPAA SRMLSEMEAI VKSPLCQRAS 
RGVVLTKFGE ALALARRART ILLELREASR ELNQMKSGSG GSVYIGAVTA 
PAISLVVPAI RRAMDTYPGI EINVQVESSN VLARELLAAR HDFIIGRIPD 
DFDPGLFSIH EIGIERACLV VREGHPLMRG EPVTLQDLSG YDWVFQPPGA 
LLRRTMEDVF LTHGVAMPRN VINTPSVVLT LALVCNTNAI APIAQDMAEF 
VAGQQADMAE PAFCQRISNS WSSLTASLPP KAGSCRPAPA CFMIWCWMKA 
VS

>VRPR_SALTY VIRULENCE GENES TRANSCRIPTIONAL ACTIVATOR.
MDFLINKKLK IFITLMETGS FSIATSVLYI TRTPLSRVIS DLERELKQRL 
FIRKNGTLIP TEFAQTIYRK VKSHYIFLHA LEQEIGPTGK TKQLEIIFDE 
IYPGSLKNLI ISALTISGQK TNIMGRAVNS QIIEELCQTN NCIVISARNY 
FHRESLVCRT SVEGGVMLFI PKKFFLCGKP DINRLAGTPV LFHEGAKNFN 
LDTIYHFFEQ TLGITNPAFS FDNVDLFSSL YRLQQGLAML LIPVRVCRAL 
GLSTDHALHI KGVALCTSLY YPTKKRETPD YRKAIKLIQQ ELKQSTF

>IRGB_VIBCH IRON-REGULATED VIRULENCE REGULATORY PR
MQDLSAVKAF HALCQHKSLT AAAKALEQPK STLSRRLAQL EEDLGQSLLM 
RQGNRLTLTK AGEVFAVYSE QLLELANKSQ EALQELNNQV TGELTLVVHP 
NLIRGWLSQV LDEFMQQHST LKIRLLSQFQ HSDEVFEPDL IIWIEHAAPM 
GYRKERLGYW RYATYASPKY LAHRDKPTHP RELIHHPWID FIACRRAELE 
LHHPEFGSYS LPALESRLQS DNLAMQADAI AKGRGIGLLP TWFANGFETA 
HPGSLIPCVN GWQSQPTEIN CFYPLGRHPL RLRLFIDALR QARPDEWQ

>YDHB_ECOLI HYPOTHETICAL 35.2 KD PROTEIN IN CFA-PU
MWSEYSLEVV DAVARNGSFS AAAQELHRVP SAVSYTVRQL EEWLAVPLFE 
RRHRDVELTA AGAWFLKEGR SVVKKMQITR QQCQQIANGW RGQLAIAVDN 
IVRPERTRQM IVDFYRHFDD VELLVFQEVF NGVWDALSDG RVELAIGATR 
AIPVGGRYAF RDMGMLSWSC VVASHHPLAL MDGPFSDDTL RNWPSLVRED 
TSRTLPKRIT WLLDNQKRVV VPDWESSATC ISAGLCIGMV PTHFAKPWLN 
EGKWVALELE NPFPDSACCL TWQQNDMSPA LTWLLEYLGD SETLNKEWLR 
EPEETPATGD 

>BSCITRA_1 CitR [Bacillus subtilis]
MDFKWLHTFV TAAKYENFRK TAETLFLSQP TVTVHIKQLE KEISCNVFDV 
KGRQIQLTDE GRAYLPYALR LLDDYENSMA ELHRVRQGYS QTLQLAVSPL 
IADTVLPSVM KRYTAMNTET EMAVTIFESA EIASLIKAGE ADIGLSCLKV 
QSSSLSCHCL YKDPVVLVAP PDKRFIEDNE IDAKEVLEQY LLLTHNHPDY 
WDDLLRQVRM TFPFVRTMKV TQTHITKRFI KEGLGVSFLP LSTVKRELAE 
KQMIRIPYQS VQLPYAGLTR LPFMKIRKKK SSWIFYHIFI FRSNQNACAP 
SNEKNPFQ

>BLAA_STRCI BETA-LACTAMASE REGULATORY PROTEIN BLAA
MDVVNACRAF VKVSERGSFT VGAAAAQMSQ SVASRRVAAL EKHFGERLFD 
RASRRPSLTP FGRDMLPAAR RLVRVADVLE DEARAARSRP MRLAVPASCT 
TAELARLVAD SRERDIRLDV RTAGPEQRAE LVRTQEVRAG LLAVPPDQAL 
WAVPLGLAGA DEPQTRRVFV ESLRLRRGEP GPARCIRVQP EDDVPHIQGR 
LARLRDAVGL RPAQLSVAPD LTSATADVLS SDDLLLCSPA QAAELGLYWR 
PVGELRLARG YVLDAAVEAD AERLRGRLAP YLARALGATA DHGPDPATGA 
GPGADAGTEP GARAEPGAPE EGAQAC

>SINR_SALTY SINR PROTEIN.
MMELINNRGM RDWMIFIKVA EVGNLSRAAR ELDISISAVS KSLSRLENSI 
EVTLLRRDSH HLELTGAGQT AYASMKRITS SFQSLLDELR NPDKIIRGSI 
KFSAPAIVCE FLANKWIWEF TASYPDTKIY LDSRERSDFF SKSLEFDELV 
FKSGIIESED LVYRKISPLK LVLCASPKYI RKYGRISHPG DLENHIIVGL 
HNHGLSGPLT LFRQDESYTI SGAVNVHLSS NNLLSVLNLV LEGKGINLMT 
PAWLATKYLK NNELEIILPE WRVPDLPIYL VWRHRQYYSP LFQRFLSFIE 
DKWNNRPQID FLNDD

>PDU12464_2 LysR-type transcriptional ac
MNWDDLRVVA AINRCGSFNR AAKMLNVEET TIARRLARLE GSLGCVLFQA 
VDGQRRPTEQ CRALLQPLVL MEQAAEAITL QLERQERPLR NFRLTTIDAI 
AQHYLAPTLA DLLIAEPELS LQLETSDDNV DMARWHADIA IRLGRPRRGN 
FTMRRVGEMR FNLVLPRGAA PEDLVLAAYP DPLMEVPEMQ DFQQYFPGRQ 
ARLRSANLRV IRVLVDSGRA AAVLPDFLSV DLVGDERFQV HRLPARREIW 
LLAQPHLRDD PLARRVTNWC ADLFAETLAG DAV

>YREC_VIBCH HYPOTHETICAL 41.3 KD PROTEIN (RECA PRO
MLLVRRPKRL AWWILPVCDA IGLAVFVGIG VEKALIYQDS ALIAIIMGVI 
TGCGGGIIRD VLAREIPMVL RSEVYATAVL WWHFNYALAM GYSSSRGTAL 
LGGFFHALNS SRSDPVAPFS ANLCPDQITG SAPNAPCEVP LSQKSPSYLK 
LSSLCELNAR PRLRFHITST HLFPFVINTC YSKALKPYWC SAKEKTMSRT 
GSQLYISQSA VSKRIANLEK KLSKKLIVPA GRHIKLTADA EQIIASIGPT 
FNELHGLIFE QQTLEDNTLL GMDCSETLVA GYLGTCRHAS LALARRWGNI 
ARSQARSHWV ITTNHRNASI RTLRVITTNH TPRIVENVQS GKATLGFCAG 
YLPANPFTVL AKRRCTHCQV SLSPMI

>CYSB_ECOLI CYS REGULON TRANSCRIPTIONAL ACTIVATOR.
MKLQQLRYIV EVVNHNLNVS STAEGLYTSQ PGISKQVRML EDELGIQIFS 
RSGKHLTQVT PAGQEIIRIA REVLSKVDAI KSVAGEHTWP DKGSLYIATT 
HTQARYALPN VIKGFIERYP RVSLHMHQGS PTQIADAVSK GNADFAIATE 
ALHLYEDLVM LPCYHWNRAI VVTPDHPLAG KKAITIEELA QYPLVTYTFG 
FTGRSELDTA FNRAGLTPRI VFTATDADVI KTYVRLGLGV GVIASMAVDP 
VADPDLVRVD AHDIFSHSTT KIGFRRSTFL RSYMYDFIQR FAPHLTRDVV 
DAAVALRSNE EIEVMFKDIK LPEK

>DGDR_BURCE 2,2-DIALKYLGLYCINE DECARBOXYLASE REPRE
MQGRKGANTL GRSLEIDLLR SFVVIAEVRA LSAAARVGRT QSALSQQMKR 
LEDIVDQPLL PAHRPRRGAD APRRAAARAC AAHPAAARRG NGRPVRHGVD 
GDDPVRVPGR LRGGVSAAAA AAVFEPASAS AGDRRNRMRA DAAAARTARE 
ARGRSRDDFI AGRWGERRHH SSRAAGLDRL SGAGARAFRS ACRSRCPIPI 
RSITSRPATR CIAPVAITAS RMRAAVSRG

>YIAU_ECOLI HYPOTHETICAL 37.2 KD PROTEIN IN AVTA-S
MTKLQLKYRE LKIISVIAAS ENISHAATVL GIAQANVSKY LADFESKVGL 
KVFDRTTRQL MLTPFGTALL PYINDMLDRN EQLNNFIADY KHEKRGRVTI 
YAPTGIITYL SKHVIDKIKD IGDITLSLKT CNLERNAFYE GVEFPDDCDV 
LISYAPPKDE SLVASFITQY AVTAYASQRY LEKHPISRPD ELEHHSCILI 
DSMMIDDANI WRFNVAGSKE VRDYRVKGNY VCDNTQSALE LARNHLGIVF 
APDKSVQSDL QDGTLVPCFQ QPYEWWLDLV AIFRKREYQP WRVQYVLDEM 
LREIRHQLAQ SQQLRPEQAA ESED

>LUXS_VIBFI LUXR REGULATORY PROTEIN.
MNIKNINANE KIIDKIKTCN NNKDINQCLS EIAKIIHCEY YLFAIIYPHS 
IIKPDVSIID NYPEKWRKYY DDAGLLEYDP VVDYSKSHHS PINWNVFEKK 
TIKKESPNVI KEAQESGLIT GFSFPIHTAS NGFGMLSFAH SDKDIYTDSL 
FLHASTNVPL MLPSLVDNYQ KINTTRKKSD SILTKREKEC LAWASEGKST 
WDISKILGCS ERTVTFHLTN TQMKLNTTNR CQSISKAILT GAINCPYLKN 


>GERE_BACSU GERMINATION PROTEIN GERE.
MKEKEFQSKP SLTKREREVF ELLVQDKTTK EIASELFISE KTVRNHISNA 
MQKLGVKGRS QAVVELLRMG ELEL

>COM1_BACSU COMPETENCE PROTEIN A-1.
MKKILVIDDH PAVMEGTKTI LETDSNLSVD CLSPEPSEQF IKQHDFSSYD 
LILMDLNLGG EVNGMELSKQ ILQENPHCKI IVYTGYEVED YFEEAIRAGL 
HGAISKTESK EKITQYIYHV LNGEILVDFA YFKQLMTQQK TKPAPSSQKE 
QDVLTPRECL ILQEVEKGFT NQEIADALHL SKRSIEYSLT SIFNKLNVGS 
RTEAVLIAKS DGVL

>KPNMOAR_1 regulator protein [Klebsiella
MSALLKASRN DAIIARCLQT ISQLIPLTSA VFYRVNNRLK PENYILHNIS 
DNTHQQYLEN FQPLDPLLPS HFSHQNTTVA AMTPRLCDRN RHYYHEFMLP 
NNVRDMTEIF IRRERRIVAG ISLMRDVPFS SEERQRAQAV LPLVELAIRD 
CLQEEDDLPA ILTAKEREIV GMVREGASNK LIARQLDISL STVKTHLRNI 
FAKTEVVNRT ELVSRTWMPA AQRTLHL

>NODW_BRAJA NODULATION PROTEIN W.
MTGRFDWRGQ GGHTEASTKA IVFVVEDDIS MRRSLTNLFR SVGLEVVAFG 
SAREMLQSTM PDVTSCLVLD VRLPGLSGLD YQTELARLNI HIPIIFITGH 
GDIPMTVRAM KGGAVDFLSK PFRDQELLDA VVAATERDRK RREAQRTVAN 
LKSLFETLSP REQAVMKLVA TGLMNKQVAA ELGLAEITVK IYRGHVMKKM 
RARSLADLIR MSETLGISAN HTEQTQV

>ASEXAN2_1 orf2 gene product [Aeromonas 
MQALEQGLPA GVWTLAQVSQ GRLDPEYRHH FYQATGWQEE VGLILPVRDG 
LTLMLFLGRL DKRSTLSRDE LARLEGVFPL VHSLCRQQWQ QSQPLLAQST 
AQPDSTSLKS AVEQAMASVG GDRLTRRERQ VAELLLQGLD TEAIAAALGI 
GNGTVKNHRK HLYGKLRLGS RAELFNLFLN HLITAPVGDI QTP

>RCSA_ERWST COLANIC ACID CAPSULAR BIOSYNTHESIS ACT
MPTIIMDSCN YTRLGLSDYM SSKGVKKKNI TSVSDIEQLQ QRCEQLKPGV 
VFINEDCFIH ETDSSERIRS IINQHPETLF FIFMAISNIH FEEYLYVRKN 
LIITSKAIKP STLDSLLSTY LQKKLNMSPR ISSGLDVHPL TLSQTESNML 
KMWMSGHDTI QISDKMQIKA KTVSSHKGNI KRKIKTHNKQ VIYHVVRLTD 
NVTSGIYVNV R

>PSEEPSR_1 epsR gene product [Pseudomona
MKSIVVEAHP LVRAGATHVL QALPAVSQVV SVEPGEALFE NLAAHADAEL 
ALIGLPLPGI DDIPALTRLL RQPHPRHIAV LGESDSPAHV RAVMQLNISA 
YLLKSYAGKL IAAALELVLA GGRYVPASIV LARPDSPFGI TRAGNDDCAM 
LGLTQRQYEI LVLLSRGHPV KTISRMLGIS EATTKAHINA LYRRLEVRSR 
TEAIFVATQR GAMLMSHPRL VEPPIHPEPS RLVHAG

>MOXX_PARDE METHANOL UTILIZATION CONTROL REGULATOR
MQAALKLQSD DARPLQILIV DDHPVVAEGW GRIIRTKTAC EIASAPSASE 
GWRAWRQARP DLMVVDLSIG RNKIAGIRLI ERLRRVDPDL PILVFTMHRS 
PVLARRALMF GANGIINKDS PPAEICAAFT EVARGGNYVD SRLAMQIALL 
NVSRPGTSAP RLTGREEEIL GMITEGMSYR DIADRACISY KTVSNVSLVL 
KDKLGAANLA DLVVKGIRYF EGD

>A47096 response regulator homolog, aerial myceli
MTTVLLVHTV PLWRASLASL LGTGRGIELR TAEHGAIRAA LSGPSPDVLL 
TDLDCPGALD VLDEVKTVTA PHGGPCPLAV LTRSDRPSGL RRAYEAGALG 
YIDKYRPVDD LSEVMHKLAD GGRHIDESLA FSLLQVADMP LSPRELSVLS 
MAEGGDTVAG IAGRLHLTPG TVRNYLAAAI RKSGARNRLD AIRRAKEAGW 
I

>RCSB_ECOLI REGULATOR OF CAPSULE SYNTHESIS B COMPONENT.
MNNMNVIIAD DHPIVLFGIR KSLEQIEWVN VVGEFEDSTA LINNLPKLDA 
HVLITDLSMP GDKYGDGITL IKYIKRHFPS LSIIVLTMNN NPAILSAVLD 
LDIEGIVLKQ GAPTDLPKAL AALQKGKKFT PESVSRLLEK ISAGGYGDKR 
LSPKESEVLR LFAEGFLVTE IAKKLNRSIK TISSQKKSAM MKLGVENDIA 
LLNYLSSVTL SPADKD

>BRPA_STRHY BIALAPHOS BIOSYNTHETIC PATHWAY REGULAT
MTRLLSAHRK VVADQGRLLE ALESALGELV RSSPSRTDCS SLEAEQCAVG 
CFAMDPLVAA EGEVLLCLDP ADLEQERFSY LLECLHGAFL RGVTIRCICA 
ESMINLPGGR SYIQELQTAG AEIRVAPLLP FRLMLVDRIF ACVSVVDRHG 
ENSTLEIRSP ETCHFVHRVF DYCWVTRTSS KACETADAID VSDREVIILR 
LLANGMKDVA MARSLGISTR TLRRVITDLM GKLGVSSRFQ LGARAAECRL 
LWSVLS

>STMCHO_2 Cho-Orf3 [Streptomyces sp.] = hth!
MSPLPGRRDE EDLLNSLLSA LRRGRPALVG VHGPPGIGRS ALLDRAAALA 
ERAGVRTVAA QACREETDLP HGVAEQLHAA LGTGRQPADL CRALLAAARE 
QPLLVVVDDV QWADTPSLRA LQALARRLAG TSLMLLTARS DALPPGPDDR 
IEPCPLTDGH AVARHTLDLG PLTQDAVGEI LGRAWGTAVD PGFREAAAQA 
VEGNPMVLRS VVRRFGRHGW RPWVDHLPHL TDSAAEAVRE RTLRTLAMLP 
EELLDVLRVV AAAGEDCSTG MIASLAEPRT TGAARALTLL SGTGLLTPGP 
RPAFREPKAA EAVLARLSTE RREELHARAA DWAHRWAVPD SGVARMLLGA 
RVLGAAWAVD VLRREAARCR LAGKRAAAAR LLQRALREPM PPPLRVRLLT 
ELSAAVLLSE PEAADRHLRQ ALLVPADAGA GPFWVRAAEL LVARGDVVAA 
QPLIAQCIGR TEPGSADRAA LRALYWLAEQ SQPEAAHELD RPPVDELPEL 
PEQPAEAAAA AWRTALLGRD VDRARQLARA ALGPEARPVV PPTLQVAACH 
ALVLSGDFAE ARAALDRVLV YAEHTDSRAV AGLALLVAGL TELRRERPEA 
ATVALARAQE VMPPHCWHPL MTPGLVALMA LRYLERGDRA AAGRSLALAR 
PAGAEGGLAW AYLLYTRGRV RLAGGQREEA LADLLECGRL LLARRVTNPA 
LLPWRSAAAL AHGPAPDCPV AAGLLAEERR LALAWGAPGV VTESLLGTLT 
GGRLHHTHPD AGAPASWQYR QALVALGTAP FSGHRTIDSL LGSGATAARP 
APAKPPAARV PGPPHGLTDA ELRVAALAAD GMANRAIAAE LQVTLRTVEL 
HLTKAYRKLG IRGRPQLATA LDSPEHPLPM EHS

>S25253 hypothetical protein (aadA 3' region) - S
MTGSASSVLK TDTRLLSENL FLNYGLESLF KDVAIIAGNV NYIIFDIDDY 
YTVQQYITST FKTVLIGIVT HNEYNFIDEH HAIYRIKVDA SIAEWRELLI 
LAAAGQFFPR SEKVRLTANE RNVLAMLVKG MDIRQISCEL NVHLKTIYSV 
RYHVLTKLGC RTVLDYQILS VSKAFHSKRP LKVWSG

>S06971 rmpA protein - Klebsiella pneumoniae
MLRGSINMIS QWMWLDVSGG GRFYPKGCDY DIYVNMQGNV KNNIEKLYFA 
FLKKNVSQVV NHYPRLTQKE QAVLQCLLKN GGINEIKSQL KIEEKTLSCY 
RSKITRKFGC KRYIRFMYLY SLNKEMVDER WLMQVFR

>TRAR_AGRVI TRANSCRIPTIONAL ACTIVATOR.
MQHWLDKLTD LTAIEGDGCI LKTGLADVAD HFGFTGYAYL HIQHKHIIAV 
TNYHHDWRSL YFDKKFDALD PVVKRARSRK QVFAWSGEQE RPKLSEEERA 
FYAQAADFGI RSGITIPIRT ANGSMSMFTL ASERTAIPLD REIDAVAAAA 
AVGQLHARIS FLRITPTAED AAWLDPKEAT YLRWIAVGKT MEEIADVEEV 
KYNSVRVKLR EAMKRFDVRS KAHLTALAIK RKLI

>TRJ8_ECOLI TRAJ PROTEIN.
MTVVDPARFM YERNHFPSLT DKEFETLVLY CQMMNVQMVA DYQNRKPDVI 
IKHLKSCRQK IGVESDFELY FIVINKFVNF ERVFPELTSE QINILAAFSF 
YPKRSTIARR FDIYRCDIYD ELIKIRNNLG IEDLESLRML FFMKITVFL

>MERR_PSEAE MERCURIC RESISTANCE OPERON REGULATORY PROTEIN.
MENNLENLTI GVFAKAAGVN VETIRFYQRK GLLLEPDKPY GSIRRYGEAD 
VTRVRFVKSA QRLGFSLDEI AELLRLEDGT HCEEASSLAE HKLKDVREKM 
ADLARMEAVL SELVCACHAR RGNVSCPLIA SLQGGASLAG SAMP

>MERD_PSEAE MERCURIC RESISTANCE PROTEIN MERD.
MNAYPVSRLA LDAGVSVHIV RDYLLRGLLR PVACTPGGYG LFDDAALQRL 
CFVRAAFEAG IGLDALARLC RALDAADGDE AAAQLALLRQ FVERRREALA 
DLEVQLATLP TEPAQHAESL P

>SOXR_ECOLI SOXR PROTEIN.
MEKKLPRIKA LLTPGEVAKR SGVAVSALHF YESKGLITSI RNSGNQRRYK 
RDVLRYVAII KIAQRIGIPL ATIGEAFGVL PEGHTLSAKE WKQLSSQWRE 
ELDRRIHTLV ALRDELDGCI GCGCLSRSDC PLRNPGDRLG EEGTGARLLE 
DEQN

