l
X_Sc               @   s  d  d l  m Z d  d l Z d  d l Td  d l Td  d l Td  d l Td  d l TGd „  d e j ƒ Z	 e
 d k re d ƒ yS e ƒ  Z e e j ƒ  ƒ e d ƒ Z e j e ƒ Z e d ƒ Z e j e ƒ Z Wn/ e k
 rþ Z z e e ƒ WYd d Z [ Xn Xe j ƒ  n  d S(	   i    (   u   print_functionN(   u   *c             B   s   |  Ee  Z d  „  Z d S(   c             C   s‹  t  d ƒ } t | ƒ } |  j | j d ƒ |  j t | j ƒ d ƒ | j d } |  j | j d ƒ |  j | j d ƒ |  j | j d ƒ |  j | j	 d ƒ |  j | j
 d	 ƒ |  j | j t d
 ƒ ƒ |  j | j t d ƒ ƒ |  j | j t d ƒ ƒ |  j | j t d ƒ t d ƒ t d ƒ f ƒ |  j t | j ƒ  ƒ d ƒ |  j t | j ƒ  ƒ d ƒ |  j | j ƒ  t d ƒ ƒ | j ƒ  d  S(   Nu	   1crn.dsspu   1crni.   i   i   u   12u    u   Nu   HiR   gš™™™™9P@g     ÀC@g      @g333333@g333333@u.   TTabPSIVARSNFNVcRLPGTPEAIcATYTGbIIIPGATaPGDYANu.    EE SSHHHHHHHHHHHTTT  HHHHHHHHS EE SSS   GGG  g     „§@gš™™™™9PÀg     ÀCÀ(   u   testdata_streamu
   DsspRecordu   assertEqualu   pdbidu   lenu   residuesu   numu   residu   chainidu   aau   secstrucu   solvent_acc_areau   floatu   phiu   psiu   coordu   stru   primaryu	   secondaryu
   total_areau   close(   u   selfu   fu   ru   res(    (    uJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyu   test_1   s(    .N(   u   __name__u
   __module__u   test_1(   u
   __locals__(    (    uJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyu   test_dssp_io   s   
u   test_dssp_iou   __main__u]   Running additional tests of RunDSSP. These require that the DSSP program is installed locallyu   1CGP.pdb(   u
   __future__u   print_functionu   unittestu   corebiou   corebio.sequ   corebio.seq_iou   corebio.secstruc.dsspu   test_corebiou   TestCaseu   test_dssp_iou   __name__u   printu   RunDsspu   dsspu   versionu   testdata_streamu   finu   process_pdbu   datau   recordu	   Exceptionu   excu   main(    (    (    uJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyu   <module>   s&   
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