
X_Sĩ  c               @   s  d  d l  m Z d  d l Z d  d l Td  d l Td  d l Td  d l Td  d l TGd d   d e j  Z	 e
 d k re d  yS e   Z e e j    e d  Z e j e  Z e d  Z e j e  Z Wn/ e k
 rZ z e e  WYd d Z [ Xn Xe j   n  d S(	   i    (   u   print_functionN(   u   *c             B   s    |  Ee  Z d  Z d d   Z d S(   u   test_dssp_ioc             C   s  t  d  } t |  } |  j | j d  |  j t | j  d  | j d } |  j | j d  |  j | j d  |  j | j d  |  j | j	 d  |  j | j
 d	  |  j | j t d
   |  j | j t d   |  j | j t d   |  j | j t d  t d  t d  f  |  j t | j    d  |  j t | j    d  |  j | j   t d   | j   d  S(   Nu	   1crn.dsspu   1crni.   i   i   u   12u    u   Nu   HiR   g9P@g     ĀC@g      @g333333@g333333@u.   TTabPSIVARSNFNVcRLPGTPEAIcATYTGbIIIPGATaPGDYANu.    EE SSHHHHHHHHHHHTTT  HHHHHHHHS EE SSS   GGG  g     §@g9PĀg     ĀCĀ(   u   testdata_streamu
   DsspRecordu   assertEqualu   pdbidu   lenu   residuesu   numu   residu   chainidu   aau   secstrucu   solvent_acc_areau   floatu   phiu   psiu   coordu   stru   primaryu	   secondaryu
   total_areau   close(   u   selfu   fu   ru   res(    (    uJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyu   test_1   s(    .u   test_dssp_io.test_1N(   u   __name__u
   __module__u   __qualname__u   test_1(   u
   __locals__(    (    uJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyu   test_dssp_io   s   u   test_dssp_iou   __main__u]   Running additional tests of RunDSSP. These require that the DSSP program is installed locallyu   1CGP.pdb(   u
   __future__u   print_functionu   unittestu   corebiou   corebio.sequ   corebio.seq_iou   corebio.secstruc.dsspu   test_corebiou   TestCaseu   test_dssp_iou   __name__u   printu   RunDsspu   dsspu   versionu   testdata_streamu   finu   process_pdbu   datau   recordu	   Exceptionu   excu   main(    (    (    uJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyu   <module>   s&   

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
	