l
X_Sc               @   sτ   d  d l  m Z d  d l Z d  d l Td  d l Td  d l Td  d l Td  d l TGd   d e j  Z	 e
 d k rπ e d  y7 e   Z e d  Z e j e  Z e j e  Z Wn/ e k
 rβ Z z e e  WYd d Z [ Xn Xe j   n  d S(	   i    (   u   print_functionN(   u   *c             B   s)   |  Ee  Z d    Z d   Z d   Z d S(   c             C   sg  t  d  } t |  } |  j | j d  |  j | j d j d  |  j | j d j d  |  j | j d j t d   |  j | j d j	 t d   |  j | j d j
 t d   |  j | j d j d	  |  j | j   t d
 t   |  j | j   t d t   |  j | j   t d   |  j | j d d	  | j d k  | j   d  S(   Nu   stride/stride_test_1.txtu   1A65i    u   Au   CgΩW@g     v@g\Βυ(€c@u   1u
   QIVNSVDTMTu
   CEETTEEEEEg9~@(   u   testdata_streamu   StrideRecordu   assertEqualu   pdbidu   residuesu   chainidu   secstrucu   solvent_acc_areau   floatu   phiu   psiu   residu   primaryu   Sequ   protein_alphabetu	   secondaryu   stride_alphabetu
   total_areau
   assertTrueu   get_residueu   close(   u   selfu   fu   g(    (    uL   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_stride.pyu   test_12   s       &c             C   sg  t  d  } t |  } |  j | j d  |  j | j d j d  |  j | j d j d  |  j | j d j t d   |  j | j d j	 t d   |  j | j d j
 t d   |  j | j d j d	  |  j | j   t d
 t   |  j | j   t d t   |  j | j   t d   |  j | j d d	  | j d k  | j   d  S(   Nu   stride/stride_test_2.txtu   1A59i   u    u   Cg33333SU@gΝΜΜΜΜS@gRΈλ©d@u   3u   EPTIHu   CCCCCg33333@gΝΜΜΜΜSΐ(   u   testdata_streamu   StrideRecordu   assertEqualu   pdbidu   residuesu   chainidu   secstrucu   solvent_acc_areau   floatu   phiu   psiu   residu   primaryu   Sequ   protein_alphabetu	   secondaryu   stride_alphabetu
   total_areau
   assertTrueu   get_residueu   close(   u   selfu   fu   g(    (    uL   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_stride.pyu   test_2B   s       &c             C   sg  t  d  } t |  } |  j | j d  |  j | j d j d  |  j | j d j d  |  j | j d j t d   |  j | j d j	 t d   |  j | j d
 j
 t d   |  j | j d j d  |  j | j   t d t   |  j | j   t d t   |  j | j   t d   |  j | j d d  | j d k  | j   d  S(   Nu   stride/stride_test_3.txtu   1A59i    u    u   Ti   g333333N@i   gφ(\ΒυY@i   g33333s;@u   12u   VTADVu   TCCCCi  gφ(\ΒυYΐg33333s;ΐ(   u   testdata_streamu   StrideRecordu   assertEqualu   pdbidu   residuesu   chainidu   secstrucu   solvent_acc_areau   floatu   phiu   psiu   residu   primaryu   Sequ   protein_alphabetu	   secondaryu   stride_alphabetu
   total_areau
   assertTrueu   get_residueu   close(   u   selfu   fu   g(    (    uL   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_stride.pyu   test_3R   s       &N(   u   __name__u
   __module__u   test_1u   test_2u   test_3(   u
   __locals__(    (    uL   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_stride.pyu   test_stride_io0   s   
		u   test_stride_iou   __main__ua   Running additional tests of RunStride. These require that the STRIDE program is installed locallyu   1CGP.pdb(   u
   __future__u   print_functionu   unittestu   corebiou   corebio.sequ   corebio.seq_iou   corebio.secstruc.strideu   test_corebiou   TestCaseu   test_stride_iou   __name__u   printu	   RunStrideu   strideu   testdata_filenameu   fnu   process_pdbu   datau   recordu	   Exceptionu   excu   main(    (    (    uL   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_stride.pyu   <module>%   s"   




3
	