ó
X_Sc           @  s  d  d l  m Z d  d l Z d  d l Td  d l Td  d l Td  d l Td  d l Td e j f d „  ƒ  YZ	 e
 d k rý e d ƒ yS e ƒ  Z e e j ƒ  ƒ e d ƒ Z e j e ƒ Z e d ƒ Z e j e ƒ Z Wn e k
 rï Z e e ƒ n Xe j ƒ  n  d S(	   iÿÿÿÿ(   t   print_functionN(   t   *t   test_dssp_ioc           B  s   e  Z d  „  Z RS(   c         C  s‹  t  d ƒ } t | ƒ } |  j | j d ƒ |  j t | j ƒ d ƒ | j d } |  j | j d ƒ |  j | j d ƒ |  j | j d ƒ |  j | j	 d ƒ |  j | j
 d	 ƒ |  j | j t d
 ƒ ƒ |  j | j t d ƒ ƒ |  j | j t d ƒ ƒ |  j | j t d ƒ t d ƒ t d ƒ f ƒ |  j t | j ƒ  ƒ d ƒ |  j t | j ƒ  ƒ d ƒ |  j | j ƒ  t d ƒ ƒ | j ƒ  d  S(   Ns	   1crn.dsspt   1crni.   i   i   t   12t    t   Nt   HiR   gš™™™™9PÀg     ÀCÀg      @g333333@g333333@t.   TTabPSIVARSNFNVcRLPGTPEAIcATYTGbIIIPGATaPGDYANs.    EE SSHHHHHHHHHHHTTT  HHHHHHHHS EE SSS   GGG  g     „§@(   t   testdata_streamt
   DsspRecordt   assertEqualt   pdbidt   lent   residuest   numt   residt   chainidt   aat   secstruct   solvent_acc_areat   floatt   phit   psit   coordt   strt   primaryt	   secondaryt
   total_areat   close(   t   selft   ft   rt   res(    (    sJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyt   test_1   s(    .(   t   __name__t
   __module__R"   (    (    (    sJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyR      s   t   __main__s]   Running additional tests of RunDSSP. These require that the DSSP program is installed locallys   1CGP.pdb(   t
   __future__R    t   unittestt   corebiot   corebio.seqt   corebio.seq_iot   corebio.secstruc.dsspt   test_corebiot   TestCaseR   R#   t   printt   RunDsspt   dsspt   versionR	   t   fint   process_pdbt   datat   recordt	   Exceptiont   exct   main(    (    (    sJ   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_dssp.pyt   <module>   s&   





	