ó
X_Sc           @   s„   d  d l  Td  d l Td  d l Td  d l Td  d l m Z d  d l Td  d l Z d e j f d „  ƒ  YZ	 e
 d k r€ e j ƒ  n  d S(   iÿÿÿÿ(   t   *(   t   StringIONt   test_fasta_ioc           B   s5   e  Z d  „  Z d „  Z d „  Z d „  Z d „  Z RS(   c         C   s‘   t  d ƒ } t j | ƒ } |  j t | ƒ d ƒ |  j | d j d ƒ |  j t | d ƒ d ƒ |  j t | d d d !ƒ d ƒ | j ƒ  d  S(   Ns   nexus/protein.nexi
   i    t   Cowi   iê   t
   MAYPMQLGFQ(   t   testdata_streamt   nexus_iot   readt   assertEqualt   lent   namet   strt   close(   t   selft   ft   seqs(    (    sN   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_nexus_io.pyt	   test_read   s    !c         C   s;   t  d ƒ } t | j ƒ  ƒ } t j | ƒ } | j ƒ  d  S(   Ns   nexus/protein.nex(   R   R   R   R   R   (   R   t   f0R   t   n(    (    sN   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_nexus_io.pyt   test_parse_StringIO   s    c         C   s0   t  d ƒ } |  j t t j | ƒ | j ƒ  d  S(   Ns	   globin.fa(   R   t   assertRaisest
   ValueErrorR   R   R   (   R   R   (    (    sN   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_nexus_io.pyt   test_parse_fasta_fail!   s    	c         C   s,   t  t j ƒ } |  j t t j | t ƒ d  S(   N(   R   t
   clustal_iot   exampleR   R   R   R   t   protein_alphabet(   R   R   (    (    sN   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_nexus_io.pyt   test_parse_clustal_fail(   s    	c         C   s)   t  t j ƒ } |  j t t j | ƒ d  S(   N(   R   t   plain_ioR   R   R   R   R   (   R   R   (    (    sN   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_nexus_io.pyt   test_parse_plain_fail.   s    	(   t   __name__t
   __module__R   R   R   R   R   (    (    (    sN   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_nexus_io.pyR      s
   				t   __main__(   t   corebiot   corebio.seqt   corebio.seq_iot   corebio.utilst   corebio._py3kR   t   test_corebiot   unittestt   TestCaseR   R   t   main(    (    (    sN   /Users/gec/Work/Projects/corebioproj/weblogo-3.4/test_corebio/test_nexus_io.pyt   <module>   s   




(