ó [_Sc@s®dZddlmZddlmZdefd„ƒYZdefd„ƒYZegƒZeed d ƒed d ƒed dƒeddƒgƒZ eedddƒedddƒgƒZ eedddƒedddƒedddƒgdej ƒZ eedddƒed d!dƒed"dd#ƒed$d d%ƒed&ddƒgdej ƒZ eed"dd'ƒed$d d(ƒgdej ƒZeedd)ƒed d*ƒed+d,ƒed-d.ƒed/d0ƒed d1ƒed2d3ƒed4d5ƒed6d7ƒed8d9ƒed:d;ƒed<d=ƒed>d?ƒed@dAƒedBdCƒedDdEƒedFdGƒedHdIƒedJdKƒedLdMƒgdNdOdPdQdej ƒZdRS(Ss* Popular color codings for nucleic and amino acids. Classes: ColorScheme -- A color scheme ColorGroup Generic monochrome Nucleotides nucleotide base pairing Amino Acid hydrophobicity chemistry charge taylor Status : Beta - Needs documentation. iÿÿÿÿ(tseqi(tColort ColorSchemecBs2eZdZgdddejd„Zd„ZRS(s( A coloring of an alphabet. title : string -- A human readable description defualt_color : Color -- groups : list of color groups alphabet : string -- The set of colored symbols color -- A map between a symbol and a Coloring ttblackc Cs–||_||_tj|ƒ|_||_||_i}xJ|D]B}x9|jD].}|j||<||krSt dƒ‚qSqSWqCW||_ dS(s s*Colored symbol does not exist in alphabet.N( ttitlet descriptionRt from_stringt default_colortgroupstalphabettsymbolstcolortKeyErrort_color( tselfR RRRR R tcgts((s@/home/psgendb/BIRCHDEV/pkg/weblogo-3.4/weblogolib/colorscheme.pyt__init__Fs       cCs!||jkr|j|S|jS(N(RR(Rtsymbol((s@/home/psgendb/BIRCHDEV/pkg/weblogo-3.4/weblogolib/colorscheme.pyR [s (t__name__t __module__t__doc__Rtgeneric_alphabetRR (((s@/home/psgendb/BIRCHDEV/pkg/weblogo-3.4/weblogolib/colorscheme.pyR:s t ColorGroupcBseZdZdd„ZRS(s)Associate a group of symbols with a colorcCs(||_tj|ƒ|_||_dS(N(R RRR R(RR R R((s@/home/psgendb/BIRCHDEV/pkg/weblogo-3.4/weblogolib/colorscheme.pyRbs N(RRRtNoneR(((s@/home/psgendb/BIRCHDEV/pkg/weblogo-3.4/weblogolib/colorscheme.pyR`stGtorangetTUtredtCtbluetAtgreentTAUt darkoranges$Weak (2 Watson-Crick hydrogen bonds)tGCs&Strong (3 Watson-Crick hydrogen bonds)tRKDENQt hydrophilictSGHTAPtneutraltYVMCLFIWRt hydrophobicR tGSTYCtpolartNQtpurpletKRHtbasictDEtacidictPAWFLIMVtPositivetNegatives#CCFF00s#FFFF00tDs#FF0000tEs#FF0066tFs#00FF66s#FF9900tHs#0066FFtIs#66FF00tKs#6600FFtLs#33FF00tMs#00FF00tNs#CC00FFtPs#FFCC00tQs#FF00CCtRs#0000FFtSs#FF3300tTs#FF6600tVs#99FF00tWs#00CCFFtYs#00FFCCRtTaylorRs7W. Taylor, Protein Engineering, Vol 10 , 743-746 (1997)N(RtcorebioRR RtobjectRRt monochromet nucleotidet base_pairingtunambiguous_protein_alphabetthydrophobicityt chemistrytchargettaylor(((s@/home/psgendb/BIRCHDEV/pkg/weblogo-3.4/weblogolib/colorscheme.pyt0sj&