ó 4ukOc@s;ddlZddlZddlZddlZddlZddlZddlZejdZejdZ ejdZ ejdZ ejdZ ejdZ ejdZejd Zejd Zejd Zejd Zejd ZejdZejdZejdZejdZejƒZdeejƒƒZejeƒejeejj edƒƒej!eƒe"ddƒZ#e#j$dƒe#j$dƒe dksÀe dkrÉdZ ne dkrõe#j$dƒejddƒne dFkr#ej%e e e de#dd ƒn.e dGkrQej&e e e de#dd ƒnej'd$dgƒZ(e"ed%ƒZ)ej*ƒZ+e#d&ee+ƒIJej,d ƒejƒZ-ej.d'gd(ej/ƒZ0e dkrÞd)Zned)krej1e0j2e#eƒne dHkr`e0j2j$d*ƒe0j2j$d+ƒe0j2j$e dƒe0j2j$ee+ƒdƒn]e dIkr½e0j2j$d*ƒe0j2j$d,ƒe0j2j$e dƒe0j2j$ee+ƒdƒne d-krÙe#j$d.ƒnxe d/kre#j$d0ƒe0j2j$d1ƒe0j2j$d2ƒn<e d3krQe#j$d4ƒe0j2j$d1ƒe0j2j$d5ƒnej3ee4e0j2e#ƒZed6krße5eƒdkr“dZne0j2j$edƒe0j2j$eeƒdƒe#j$d7eeƒdƒned6krþe0j2j$d2ƒned8kre0j2j$d9ƒne dJkr<e0j2j$d:ƒne0j2j$d5ƒe0j2j6ƒe0j7ƒe)j6ƒe#j6ƒe8e-Z8ej,d;ƒe"d<dƒZ9e9j$d=ej:ƒdd>ee8ƒd?ƒe9j6ƒe dkse dkse d!kse d"kse d#krÐe"d<dƒZ9e9j$dƒe9j$d@ƒe9j6ƒej'dAdBdCdeeƒddDejj eeƒgƒej;ejj eeƒe<e<ƒe=d8krej>dBejj ee?ƒƒqn>ej>dBejj eeƒƒej;ejj eeƒe@ƒeAj6ƒej!eƒejBeƒdEGHdS(KiÿÿÿÿNiiiiiiiii i i i i iiis DISCPARS.s infile.temptMSGFILEtasM--------------------- DNAPARS - DNA PARSIMONY METHODS --------------------- s idtns tinfiletbtdt1tstitpstpotpwtnedittwsDNAPARS: SEED= tdnaparststdintJsm sw sd tmsSearch option: THOROUGH tlsSearch option: LESS THOROUGH ss sn trs/Search option: REARRANGE ON JUST ONE BEST TREE sy tts&Using threshold parsimony, THRESHOLD= tys1 s3 itoutfilesElapsed time on s: s secondss,------------------------------------------- s consense.pytouttreetesoutfile.consensesDNAPARS Completed(RR(spsR R (RR(spsR R (RRspsR R (Ctostos.pathtphyliptshutilt subprocesstsysttimetargvtINFILEtSOPTIONtMETHODt REPLICATEStPERCENTt BLOCKSIZEtJUMBLEtNUMJUMtOUTGROUPtPARSTYPEt THRESHOLDt TRANSVERSIONtTERMOUTt PRINTDATAtOUTFILEtTREEFILEtgetcwdtSTARTDIRtstrtgetpidtTEMPDIRtmkdirtcopyfiletpathtjointchdirtopent msgfile_htwritet stdresampletweightless_resampletcallt p_testinfilet termout_ht phylip_randomtRSEEDtnicet start_timetPopentPIPEt p_PROGRAMtjumbleRt do_outgrouptNUMSEQtinttclosetwaitt time_elapsedt outfile_htunamet merge_msgtTruetALLTREEStmovet ALLTREEFILEtFalset OUTfile2_htrmtree(((s dnapars.pytsØ                                " "                        - <   :" %