AFLPgui
Class CutoffDialog

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--java.awt.Window
                    |
                    +--java.awt.Dialog
                          |
                          +--AFLPgui.CutoffDialog

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.event.ActionListener, java.util.EventListener, java.awt.image.ImageObserver, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.MenuContainer, java.io.Serializable, java.awt.event.WindowListener

public class CutoffDialog

extends java.awt.Dialog

implements java.awt.event.ActionListener, java.awt.event.ItemListener, java.awt.event.KeyListener, java.awt.event.WindowListener

This dialog box will display a cutoff. All of the levels of the cutoff are displayed in a list. Any element of the list can be selected, and the height of that element can be modified. Additionally, new elements, cutoff functions, can be added to the list as well as deleted. The dialog box will save the cutoff to a list of lanes when the "Ok" button is clicked.

See Also:

Cutoff, CutoffFunction, Serialized Form

Inner classes inherited from class java.awt.Dialog

java.awt.Dialog.AccessibleAWTDialog

Inner classes inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow

Inner classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Inner classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

CutoffDialog(java.awt.Frame parent, java.lang.String title, boolean modal)
Create a new CutoffDialog with the specified parameters.

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e) Handles the events generated by the buttons.
void	init(Cutoff ct, DataList lanes, double startPos) Initializes the CutoffDialog with important information.
void	itemStateChanged(java.awt.event.ItemEvent e) Loads the selected function when something in the list is changed.
void	keyPressed(java.awt.event.KeyEvent e) Unused
void	keyReleased(java.awt.event.KeyEvent e) Used to store the info when enter is pressed in the text field.
void	keyTyped(java.awt.event.KeyEvent e) Unused
void	setVisible(boolean b) Shows or hides this dialog box.
void	storeInfo(int index) Reads in the height from the text field and stores it into the cutoff.
void	windowActivated(java.awt.event.WindowEvent e) Unused
void	windowClosed(java.awt.event.WindowEvent e) Unused
void	windowClosing(java.awt.event.WindowEvent e) Closes the dialog box.
void	windowDeactivated(java.awt.event.WindowEvent e) Unused
void	windowDeiconified(java.awt.event.WindowEvent e) Unused
void	windowIconified(java.awt.event.WindowEvent e) Unused
void	windowOpened(java.awt.event.WindowEvent e) Unused

Methods inherited from class java.awt.Dialog

addNotify, dispose, getAccessibleContext, getTitle, hide, isModal, isResizable, paramString, setModal, setResizable, setTitle, show

Methods inherited from class java.awt.Window

addWindowListener, applyResourceBundle, applyResourceBundle, finalize, getFocusOwner, getGraphicsConfiguration, getInputContext, getListeners, getLocale, getOwnedWindows, getOwner, getToolkit, getWarningString, isShowing, pack, postEvent, processEvent, processWindowEvent, removeWindowListener, setCursor, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getInsets, getLayout, getMaximumSize, getMinimumSize, getPreferredSize, insets, invalidate, isAncestorOf, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, remove, removeAll, removeContainerListener, removeNotify, setFont, setLayout, update, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addPropertyChangeListener, addPropertyChangeListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentOrientation, getCursor, getDropTarget, getFont, getFontMetrics, getForeground, getGraphics, getHeight, getInputMethodRequests, getLocation, getLocation, getLocationOnScreen, getName, getParent, getPeer, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isDisplayable, isDoubleBuffered, isEnabled, isFocusTraversable, isLightweight, isOpaque, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setDropTarget, setEnabled, setForeground, setLocale, setLocation, setLocation, setName, setSize, setSize, show, size, toString, transferFocus

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

CutoffDialog

public CutoffDialog(java.awt.Frame parent,
                    java.lang.String title,
                    boolean modal)

Create a new CutoffDialog with the specified parameters.

Parameters:

parent - the owner of this dialog box

title - the title of the dialog box

modal - if true, dialog blocks input to the parent window when shown

Method Detail

init

public void init(Cutoff ct,
                 DataList lanes,
                 double startPos)

Initializes the CutoffDialog with important information. This should be called before displaying the dialog box.

Parameters:

ct - the cutoff to display. The levels of the cutoff will appear in the list.

lanes - the lanes to add the cutoff to when the "Ok" button is clicked.

startPos - the size in bp where the cutoff should first be defined. The cutoff will apply to the lane from the start position to the beginning of the next cutoff or until the end of the lane.

itemStateChanged

public void itemStateChanged(java.awt.event.ItemEvent e)

Loads the selected function when something in the list is changed.

Specified by:

itemStateChanged in interface java.awt.event.ItemListener

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Handles the events generated by the buttons.

Specified by:

actionPerformed in interface java.awt.event.ActionListener

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

Used to store the info when enter is pressed in the text field.

Specified by:

keyReleased in interface java.awt.event.KeyListener

windowClosing

public void windowClosing(java.awt.event.WindowEvent e)

Closes the dialog box. This has the same affect as pressing the cancel button.

Specified by:

windowClosing in interface java.awt.event.WindowListener

storeInfo

public void storeInfo(int index)
               throws java.lang.NumberFormatException

Reads in the height from the text field and stores it into the cutoff. If the index is -1, then a new level will be created and added to the cutoff.

Parameters:

index - the level of the current cutoff function, -1 for a new function

Throws:

java.lang.NumberFormatException - occurs if the method cannot read a number from the text field.

setVisible

public void setVisible(boolean b)

Shows or hides this dialog box. When it is shown, it will load a blank selection.

Overrides:

setVisible in class java.awt.Component

Parameters:

b - true to show the component.

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

Unused

Specified by:

keyPressed in interface java.awt.event.KeyListener

keyTyped

public void keyTyped(java.awt.event.KeyEvent e)

Unused

Specified by:

keyTyped in interface java.awt.event.KeyListener

windowOpened

public void windowOpened(java.awt.event.WindowEvent e)

Unused

Specified by:

windowOpened in interface java.awt.event.WindowListener

windowClosed

public void windowClosed(java.awt.event.WindowEvent e)

Unused

Specified by:

windowClosed in interface java.awt.event.WindowListener

windowIconified

public void windowIconified(java.awt.event.WindowEvent e)

Unused

Specified by:

windowIconified in interface java.awt.event.WindowListener

windowDeiconified

public void windowDeiconified(java.awt.event.WindowEvent e)

Unused

Specified by:

windowDeiconified in interface java.awt.event.WindowListener

windowActivated

public void windowActivated(java.awt.event.WindowEvent e)

Unused

Specified by:

windowActivated in interface java.awt.event.WindowListener

windowDeactivated

public void windowDeactivated(java.awt.event.WindowEvent e)

Unused

Specified by:

windowDeactivated in interface java.awt.event.WindowListener